RchiOBHm_Chr6g0263441
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0021447
Physical Location & Seq
Reverse (-)
18284339 .. 18286352
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23628

Sequence Viewer

Length: 1092 bp
ATGGCATTGGCTGCAAAAGGTGAGGGTCCAGCTATCGGTATCGACCTTGGAACAACTTACTCATGCGTTGGTGTTTGGCAACATGATCGTGTTGAGATCATAGCCAATGATCAAGGAAACAGAACGACGCCGTCATGTGTTGCTTTTACCAACACCGGGCGTTTGATCGGTGATGCTGCCAAGAACCAGGCTTCTATGAACCCCATCAACACTATTTTTGATGCAAAGCGATTGATCGGTAGGAAATTCAGTGATGCTTCAGTTAAGAGTAACATGAAGCTATGGCCTTTCAAGGTACGTCGTGGTCCTGGGGATAAGCCAATAATTATGGTCAATTACAAGAATGAAGAAAAGCGATTTGTTCCTGAGGAGATATCTTCAATGGTTCTTCTTAAGATGCGTGAAATAGCAGAGGCCTACCTCGGAACAACTATAAAGAATGTTGTTGTTACTGTTCCAGCCTACTTTAGTGACTCTCAACGCCAAGCCACAAAGGATGCTGGTGTTATTGCCGGGATGAATGTTATGCGTATCATCAATGAGCCTACAGCCGCTGCAATTGCATATGGCTTGGACAAAAAGGACAGCACTCTTGGTGGGAAGAATGTTCTTGTTATCGATCTAGGTGGTGAATGGTCAACTATCTTGTACAAGAGTTTGAGAGGAAGCATCAAACTGATATTTGCAAATTGCAATAACCCCAAAGCATTGAGAAGGTTGAGAACATCTTGTGAGAGAGCAAAGAGACTTCTTTCTTCAACTGCTCAAACCACCATTGAGATCGATTCTTTATGTGATGGTATTGATTTTGTTTCTAAAATAACCAGAGCAAAATTTGAGGAGCTCAACCTGGATCTTTTTACAAAGTGTTTGGAGTCTGTCGAAAAGTGTTTGACGGATGCTCAAATGGATAAGAGCATTGTTGATGATGTTGTTCTTGTTGGTGGATCTACTAGAATTCCAAAGGTACAAGAAGTAATACAGGACTTCTTTAACGGTAAGGAGCTTTGTAAGAGCATCAATCCTGATGAAGCAGTTGCATATGGCGCGGCCATACAAGCTACAATTTTGAACGGTTCCATTGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

363

Amino Acids

39.68

Weight (kDa)

8.66

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 11 - 211 4.1e-91 Hsp70 protein
MreB_Mbl PF06723 143 - 220 3.8e-06 MreB/Mbl protein
HSP70 PF00012 232 - 360 4.8e-47 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021447)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0245101 RchiOBHm_Chr6g0245111 RchiOBHm_Chr6g0263441
rosa_rugosa Rorug05G0512200
rosa_samantha Rh6BG022900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1049
AciI CCGC 2 cut(s) 552, 1049
AclWI GGATC 2 cut(s) 861, 955
AcoI YGGCCR 1 cut(s) 1050
AcsI RAATTY 3 cut(s) 245, 833, 957
AcuI CTGAAG 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 3 cut(s) 297, 650, 969
AfiI CCNNNNNNNGG 2 cut(s) 35, 156
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 4 cut(s) 292, 381, 759, 1072
AjnI CCWGG 3 cut(s) 186, 307, 849
AluBI AGCT 5 cut(s) 32, 280, 844, 1006, 1061
AluI AGCT 5 cut(s) 32, 280, 844, 1006, 1061
Alw21I GWGCWC 1 cut(s) 846
Alw26I GTCTC 1 cut(s) 739
AlwI GGATC 2 cut(s) 861, 955
AlwNI CAGNNNCTG 1 cut(s) 554
AoxI GGCC 3 cut(s) 284, 414, 1050
ApeKI GCWGC 3 cut(s) 11, 176, 554
ApoI RAATTY 3 cut(s) 245, 833, 957
AspLEI GCGC 1 cut(s) 1049
AspS9I GGNCC 2 cut(s) 26, 305
AsuC2I CCSGG 2 cut(s) 157, 514
AsuHPI GGTGA 3 cut(s) 32, 182, 641
AvaII GGWCC 2 cut(s) 26, 305
AxyI CCTNAGG 1 cut(s) 366
BanII GRGCYC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 846
BbvI GCAGC 2 cut(s) 163, 541
BccI CCATC 2 cut(s) 212, 791
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 3 cut(s) 188, 309, 851
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 2 cut(s) 157, 514
BcoDI GTCTC 1 cut(s) 739
BfaI CTAG 2 cut(s) 623, 954
BfmI CTRYAG 1 cut(s) 546
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 5 cut(s) 12, 177, 552, 555, 1050
BlsI GCNGC 5 cut(s) 13, 178, 553, 556, 1051
Bme1390I CCNGG 5 cut(s) 157, 188, 309, 514, 851
Bme18I GGWCC 2 cut(s) 26, 305
BmgT120I GGNCC 2 cut(s) 26, 305
BmiI GGNNCC 2 cut(s) 27, 1078
BmrFI CCNGG 5 cut(s) 157, 188, 309, 514, 851
BmsI GCATC 8 cut(s) 163, 211, 244, 387, 487, 678, 889, 1026
BpuMI CCSGG 2 cut(s) 157, 514
Bsa29I ATCGAT 2 cut(s) 618, 783
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 46, 308, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 156
Bse21I CCTNAGG 1 cut(s) 366
BseBI CCWGG 3 cut(s) 188, 309, 851
BseCI ATCGAT 2 cut(s) 618, 783
BseDI CCNNGG 3 cut(s) 46, 308, 421
BseGI GGATG 3 cut(s) 502, 522, 904
BseLI CCNNNNNNNGG 2 cut(s) 35, 156
BseMII CTCAG 1 cut(s) 357
BseRI GAGGAG 2 cut(s) 383, 854
BseXI GCAGC 2 cut(s) 163, 541
Bsh1236I CGCG 1 cut(s) 1049
BshFI GGCC 3 cut(s) 286, 416, 1052
BshVI ATCGAT 2 cut(s) 618, 783
BsiHKAI GWGCWC 1 cut(s) 846
BsiSI CCGG 2 cut(s) 156, 513
BslI CCNNNNNNNGG 2 cut(s) 35, 156
BsmAI GTCTC 1 cut(s) 739
BsnI GGCC 3 cut(s) 286, 416, 1052
Bsp1286I GDGCHC 1 cut(s) 846
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 9 cut(s) 85, 96, 109, 165, 234, 619, 780, 853, 947
BspACI CCGC 2 cut(s) 552, 1049
BspANI GGCC 3 cut(s) 286, 416, 1052
BspCNI CTCAG 1 cut(s) 358
BspDI ATCGAT 2 cut(s) 618, 783
BspFNI CGCG 1 cut(s) 1049
BspLI GGNNCC 2 cut(s) 27, 1078
BspPI GGATC 2 cut(s) 861, 955
BspTI CTTAAG 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 648
BssECI CCNNGG 3 cut(s) 46, 308, 421
BssMI GATC 9 cut(s) 85, 96, 109, 165, 234, 619, 780, 853, 947
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 3 cut(s) 188, 309, 851
Bst4CI ACNGT 3 cut(s) 454, 998, 1076
BstACI GRCGYC 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 648
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 3 cut(s) 502, 522, 904
BstFNI CGCG 1 cut(s) 1049
BstHHI GCGC 1 cut(s) 1049
BstKTI GATC 9 cut(s) 88, 99, 112, 168, 237, 622, 783, 856, 950
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 9 cut(s) 85, 96, 109, 165, 234, 619, 780, 853, 947
BstMWI GCNNNNNNNGC 4 cut(s) 11, 560, 1046, 1058
BstNI CCWGG 3 cut(s) 188, 309, 851
BstSCI CCNGG 5 cut(s) 155, 186, 307, 512, 849
BstSFI CTRYAG 1 cut(s) 546
BstUI CGCG 1 cut(s) 1049
BstV1I GCAGC 2 cut(s) 163, 541
BstX2I RGATCY 2 cut(s) 853, 947
BstYI RGATCY 2 cut(s) 853, 947
Bsu15I ATCGAT 2 cut(s) 618, 783
Bsu36I CCTNAGG 1 cut(s) 366
BsuRI GGCC 3 cut(s) 286, 416, 1052
BsuTUI ATCGAT 2 cut(s) 618, 783
BtsCI GGATG 3 cut(s) 502, 522, 904
BtsIMutI CAGTG 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 554
CfoI GCGC 1 cut(s) 1049
Cfr13I GGNCC 2 cut(s) 26, 305
ClaI ATCGAT 2 cut(s) 618, 783
CseI GACGC 1 cut(s) 136
Csp6I GTAC 3 cut(s) 296, 649, 968
CviAII CATG 4 cut(s) 63, 83, 135, 274
CviQI GTAC 3 cut(s) 296, 649, 968
DdeI CTNAG 1 cut(s) 366
DpnI GATC 9 cut(s) 87, 98, 111, 167, 236, 621, 782, 855, 949
DpnII GATC 9 cut(s) 85, 96, 109, 165, 234, 619, 780, 853, 947
EaeI YGGCCR 1 cut(s) 1050
Ecl136II GAGCTC 1 cut(s) 844
Eco130I CCWWGG 1 cut(s) 46
Eco147I AGGCCT 1 cut(s) 416
Eco24I GRGCYC 1 cut(s) 846
Eco32I GATATC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 26, 305
Eco53kI GAGCTC 1 cut(s) 844
Eco57I CTGAAG 1 cut(s) 243
Eco81I CCTNAGG 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 844
EcoRI GAATTC 1 cut(s) 957
EcoRII CCWGG 3 cut(s) 186, 307, 849
EcoRV GATATC 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 846
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 4 cut(s) 66, 86, 138, 277
FatI CATG 4 cut(s) 62, 82, 134, 273
FauNDI CATATG 2 cut(s) 565, 1042
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 5 cut(s) 12, 177, 552, 555, 1050
FokI GGATG 3 cut(s) 509, 529, 911
FriOI GRGCYC 1 cut(s) 846
Fsp4HI GCNGC 5 cut(s) 12, 177, 552, 555, 1050
FspBI CTAG 2 cut(s) 623, 954
GlaI GCGC 1 cut(s) 1048
GluI GCNGC 5 cut(s) 12, 177, 552, 555, 1050
HaeIII GGCC 3 cut(s) 286, 416, 1052
HapII CCGG 2 cut(s) 156, 513
HgaI GACGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 1049
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 4 cut(s) 66, 86, 138, 277
Hin6I GCGC 1 cut(s) 1047
HinP1I GCGC 1 cut(s) 1047
HincII GTYRAC 1 cut(s) 639
HindII GTYRAC 1 cut(s) 639
HinfI GANTC 3 cut(s) 473, 785, 875
HpaII CCGG 2 cut(s) 156, 513
HphI GGTGA 3 cut(s) 32, 182, 641
Hpy166II GTNNAC 1 cut(s) 639
Hpy188I TCNGA 1 cut(s) 425
Hpy188III TCNNGA 2 cut(s) 365, 1025
Hpy8I GTNNAC 1 cut(s) 639
Hpy99I CGWCG 2 cut(s) 130, 303
HpyAV CCTTC 1 cut(s) 708
HpyCH4III ACNGT 3 cut(s) 454, 998, 1076
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 7 cut(s) 14, 224, 557, 563, 686, 693, 1040
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 560, 1046, 1058
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 298
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 4 cut(s) 66, 86, 138, 277
HspAI GCGC 1 cut(s) 1047
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 9 cut(s) 85, 96, 109, 165, 234, 619, 780, 853, 947
LmnI GCTCC 2 cut(s) 841, 1003
Lsp1109I GCAGC 2 cut(s) 163, 541
LweI GCATC 8 cut(s) 163, 211, 244, 387, 487, 678, 889, 1026
MaeI CTAG 2 cut(s) 623, 954
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 3 cut(s) 269, 448, 470
MalI GATC 9 cut(s) 87, 98, 111, 167, 236, 621, 782, 855, 949
MboI GATC 9 cut(s) 85, 96, 109, 165, 234, 619, 780, 853, 947
MboII GAAGA 5 cut(s) 359, 369, 380, 613, 747
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 2 cut(s) 853, 947
MhlI GDGCHC 1 cut(s) 846
MluCI AATT 8 cut(s) 245, 324, 334, 558, 688, 833, 957, 1065
MlyI GAGTC 2 cut(s) 467, 884
MnlI CCTC 6 cut(s) 16, 361, 406, 431, 656, 832
MseI TTAA 3 cut(s) 264, 393, 993
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 554
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 2 cut(s) 156, 513
MspR9I CCNGG 5 cut(s) 157, 188, 309, 514, 851
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 3 cut(s) 188, 309, 851
MvnI CGCG 1 cut(s) 1049
MwoI GCNNNNNNNGC 4 cut(s) 11, 560, 1046, 1058
NciI CCSGG 2 cut(s) 157, 514
NdeI CATATG 2 cut(s) 565, 1042
NdeII GATC 9 cut(s) 85, 96, 109, 165, 234, 619, 780, 853, 947
NlaIII CATG 4 cut(s) 66, 86, 138, 277
NlaIV GGNNCC 2 cut(s) 27, 1078
NmuCI GTSAC 1 cut(s) 470
PceI AGGCCT 1 cut(s) 416
PfeI GAWTC 1 cut(s) 785
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 5 cut(s) 13, 178, 553, 556, 1051
PleI GAGTC 2 cut(s) 467, 883
PpsI GAGTC 2 cut(s) 467, 883
Psp124BI GAGCTC 1 cut(s) 846
Psp6I CCWGG 3 cut(s) 186, 307, 849
PspGI CCWGG 3 cut(s) 186, 307, 849
PspN4I GGNNCC 2 cut(s) 27, 1078
PspPI GGNCC 2 cut(s) 26, 305
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 2 cut(s) 853, 947
PsyI GACNNNGTC 1 cut(s) 130
RsaI GTAC 3 cut(s) 297, 650, 969
RsaNI GTAC 3 cut(s) 296, 649, 968
RseI CAYNNNNRTG 1 cut(s) 87
SacI GAGCTC 1 cut(s) 846
SaqAI TTAA 3 cut(s) 264, 393, 993
SatI GCNGC 5 cut(s) 12, 177, 552, 555, 1050
Sau3AI GATC 9 cut(s) 85, 96, 109, 165, 234, 619, 780, 853, 947
Sau96I GGNCC 2 cut(s) 26, 305
SchI GAGTC 2 cut(s) 467, 884
ScrFI CCNGG 5 cut(s) 157, 188, 309, 514, 851
SduI GDGCHC 1 cut(s) 846
SfaNI GCATC 8 cut(s) 163, 211, 244, 387, 487, 678, 889, 1026
SfcI CTRYAG 1 cut(s) 546
SinI GGWCC 2 cut(s) 26, 305
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 8 cut(s) 245, 324, 334, 558, 688, 833, 957, 1065
SseBI AGGCCT 1 cut(s) 416
SsiI CCGC 2 cut(s) 552, 1049
SspMI CTAG 2 cut(s) 623, 954
SstI GAGCTC 1 cut(s) 846
StuI AGGCCT 1 cut(s) 416
StyD4I CCNGG 5 cut(s) 155, 186, 307, 512, 849
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 3 cut(s) 454, 998, 1076
TaiI ACGT 1 cut(s) 301
TaqI TCGA 4 cut(s) 42, 618, 783, 882
TasI AATT 8 cut(s) 245, 324, 334, 558, 688, 833, 957, 1065
TatI WGTACW 1 cut(s) 648
TauI GCSGC 2 cut(s) 554, 1052
TfiI GAWTC 1 cut(s) 785
Tru1I TTAA 3 cut(s) 264, 393, 993
Tru9I TTAA 3 cut(s) 264, 393, 993
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 3 cut(s) 11, 176, 554
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 5 cut(s) 212, 290, 360, 533, 1044
TspGWI ACGGA 1 cut(s) 911
TspRI CASTG 1 cut(s) 256
Tth111I GACNNNGTC 1 cut(s) 130
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 2 cut(s) 26, 305
XapI RAATTY 3 cut(s) 245, 833, 957
XspI CTAG 2 cut(s) 623, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.