Rh6BG022900
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0021447
Physical Location & Seq
Forward (+)
3381488 .. 3381898
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG022900.1

Sequence Viewer

Length: 411 bp
ATGGATCTCTTTAGAAAATGTATGGAGACTGTGGAGAATTGTGTGAGGGATGCTAAAAGTGATAGCAAAATTGTTGATGATATTGTTCTTGTTGGTGGATCTACTAGAATTCCCAAGGGACAACAACTATTGCAAGATTTCTTTAATGGTAAGGAGCTTTGCAAGAGCATCAATCCTGACGAATCAATTGCATATGGTGCTGCCGTACAGGCTGCAGTTTTGCGTGGTGGCATCGAGAAGGTTCAAGACTTACTCTTGTTGGATGTAACTCCACATTCCCTTGGTTGTATGCGTTACACAGGAGAATATAGAGTTTATGTCCCAAGAAACACTACCATTCCCACCAAAAAAACTAAAATGGCCACAACTGTATTAAAAAAACCAAATCGGTTTGATAGTTCATGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

136

Amino Acids

15.1

Weight (kDa)

8.83

Isoelectric Point (pI)

22.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 126 1.1e-39 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021447)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0245101 RchiOBHm_Chr6g0245111 RchiOBHm_Chr6g0263441
rosa_rugosa Rorug05G0512200
rosa_samantha Rh6BG022900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 12, 106
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 108
AfaI GTAC 1 cut(s) 207
AgsI TTSAA 1 cut(s) 245
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 2 cut(s) 12, 106
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 200, 212
ApoI RAATTY 1 cut(s) 108
BalI TGGCCA 1 cut(s) 362
BbvI GCAGC 2 cut(s) 187, 199
BceAI ACGGC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 213
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 2 cut(s) 201, 213
BlsI GCNGC 2 cut(s) 202, 214
BmsI GCATC 3 cut(s) 40, 177, 240
BsaJI CCNNGG 2 cut(s) 114, 280
BseDI CCNNGG 2 cut(s) 114, 280
BseGI GGATG 2 cut(s) 55, 268
BseXI GCAGC 2 cut(s) 187, 199
BshFI GGCC 1 cut(s) 362
BslFI GGGAC 2 cut(s) 132, 305
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 132, 305
BsnI GGCC 1 cut(s) 362
Bsp143I GATC 2 cut(s) 4, 98
BspANI GGCC 1 cut(s) 362
BspMAI CTGCAG 1 cut(s) 217
BspPI GGATC 2 cut(s) 12, 106
BssECI CCNNGG 2 cut(s) 114, 280
BssMI GATC 2 cut(s) 4, 98
BssT1I CCWWGG 2 cut(s) 114, 280
Bst4CI ACNGT 2 cut(s) 31, 370
BstAPI GCANNNNNTGC 1 cut(s) 197
BstF5I GGATG 2 cut(s) 55, 268
BstKTI GATC 2 cut(s) 7, 101
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 2 cut(s) 4, 98
BstMWI GCNNNNNNNGC 2 cut(s) 197, 209
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 187, 199
BstX2I RGATCY 2 cut(s) 4, 98
BstYI RGATCY 2 cut(s) 4, 98
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 2 cut(s) 55, 268
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 402
CviJI RGCY 3 cut(s) 157, 212, 362
CviKI_1 RGCY 3 cut(s) 157, 212, 362
CviQI GTAC 1 cut(s) 206
DpnI GATC 2 cut(s) 6, 100
DpnII GATC 2 cut(s) 4, 98
EaeI YGGCCR 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 114, 280
EcoRI GAATTC 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 114, 280
ErhI CCWWGG 2 cut(s) 114, 280
FaeI CATG 1 cut(s) 405
FaiI YATR 8 cut(s) 23, 193, 195, 290, 309, 318, 403, 409
FaqI GGGAC 2 cut(s) 132, 305
FatI CATG 1 cut(s) 401
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 201, 213
FokI GGATG 2 cut(s) 62, 275
Fsp4HI GCNGC 2 cut(s) 201, 213
FspBI CTAG 1 cut(s) 105
GluI GCNGC 2 cut(s) 201, 213
HaeIII GGCC 1 cut(s) 362
Hin1II CATG 1 cut(s) 405
HinfI GANTC 1 cut(s) 182
Hpy188III TCNNGA 3 cut(s) 176, 235, 245
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 2 cut(s) 31, 370
HpyCH4V TGCA 4 cut(s) 133, 162, 191, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 209
Hsp92II CATG 1 cut(s) 405
Kzo9I GATC 2 cut(s) 4, 98
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 189, 194, 285
Lsp1109I GCAGC 2 cut(s) 187, 199
LweI GCATC 3 cut(s) 40, 177, 240
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 265, 293
MalI GATC 2 cut(s) 6, 100
MboI GATC 2 cut(s) 4, 98
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 2 cut(s) 4, 98
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 4 cut(s) 37, 69, 108, 186
MluNI TGGCCA 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 1 cut(s) 39
Mox20I TGGCCA 1 cut(s) 362
MscI TGGCCA 1 cut(s) 362
MseI TTAA 2 cut(s) 144, 374
MslI CAYNNNNRTG 1 cut(s) 406
Msp20I TGGCCA 1 cut(s) 362
MunI CAATTG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 197, 209
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 4, 98
NlaIII CATG 1 cut(s) 405
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 2 cut(s) 202, 214
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 2 cut(s) 4, 98
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 2 cut(s) 144, 374
SatI GCNGC 2 cut(s) 201, 213
Sau3AI GATC 2 cut(s) 4, 98
SetI ASST 2 cut(s) 159, 243
SfaNI GCATC 3 cut(s) 40, 177, 240
SfcI CTRYAG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 406
Sse9I AATT 4 cut(s) 37, 69, 108, 186
SspMI CTAG 1 cut(s) 105
StyI CCWWGG 2 cut(s) 114, 280
TaaI ACNGT 2 cut(s) 31, 370
TaqI TCGA 1 cut(s) 234
TasI AATT 4 cut(s) 37, 69, 108, 186
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 144, 374
Tru9I TTAA 2 cut(s) 144, 374
TseI GCWGC 2 cut(s) 200, 212
TspDTI ATGAA 1 cut(s) 390
XapI RAATTY 1 cut(s) 108
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.