RchiOBHm_Chr6g0245111
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0021447
Physical Location & Seq
Forward (+)
1039503 .. 1041050
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21968

Sequence Viewer

Length: 858 bp
ATGGCTGATGCAAAGCGATTGATTGGCAGGAAATTTAGTGATGCATGTGTTAAGAGTGATATGAAATTATGGCCTTTCAAGGTTCGTGGTGTGGGTGACAAGCCTATGATTATGATCAACTACAAGAATGAAAAGAAACAATTTGCCGCTGAGGAGATATCTTCAATGGTTCTCCATAAGATGCGCGAAATTGCAGAGGCCTATCTTGGACTAACAATAAAGAATGTTGTTTTAACTGTACCAGCATACTTCAATGACTCTCAACGACAGGCTACAAAGATGCTGGGAGCAAAAAGGACTCTTTCTTCAACTGCTGAAACCACCATTGAGATTGATTCATTATTCGAGGGTATCAACTTCCATTCCAAAATAACAAGAGCAAAATTTGAAGAGCTCAACATGGATCTCTTTAGAAAATGTATGGAGACTGTGGAGAATTGTGTGAGGGATGCTAAAAGTGATAGGAAAATTGTTGATGATATTGTTCTTGTTGGTGGATCTACTAGAATTCCCAAGGGACAACAACTATTGCAAGATTTCTTTAATGGTAAGGAGCTTTGCAAGAGCATCAATCCTGACGAAGCAATTGCATATGGTGCTGCCTTACAGGCTGCAGTTTTGCGTGGTGGCATCGAGAAGGTTCAAGACTTACTCTTGTTGGATGTAACTCCACATTCCCTTGGTTGTATGCGTTACACAGGAGAATATAGAGTTTATGTCCCAAGAAACACTACCATTCCCACCAAAAAAACTAAAATGGCCACAACTGTATTAAAAAAACCAAATCGGTTTGATAGTTCATGTGTATGGGGGCGTAGAAACAAGAGCAGAAAAAAACAAATTGTTGGGTCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

285

Amino Acids

32.17

Weight (kDa)

9.63

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 93 1.2e-29 Hsp70 protein
HSP70 PF00012 97 - 283 2.6e-52 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021447)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0245101 RchiOBHm_Chr6g0245111 RchiOBHm_Chr6g0263441
rosa_rugosa Rorug05G0512200
rosa_samantha Rh6BG022900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 186
AciI CCGC 1 cut(s) 147
AclWI GGATC 2 cut(s) 411, 505
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 3 cut(s) 32, 383, 507
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 6 cut(s) 79, 165, 253, 309, 389, 644
AluBI AGCT 2 cut(s) 394, 556
AluI AGCT 2 cut(s) 394, 556
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 2 cut(s) 411, 505
AoxI GGCC 3 cut(s) 71, 198, 759
ApeKI GCWGC 2 cut(s) 599, 611
ApoI RAATTY 3 cut(s) 32, 383, 507
AspLEI GCGC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 107
BalI TGGCCA 1 cut(s) 761
BanII GRGCYC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 396
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 586, 598
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 612
BglI GCCNNNNNGGC 1 cut(s) 608
BisI GCNGC 3 cut(s) 147, 600, 612
BlsI GCNGC 3 cut(s) 148, 601, 613
BmsI GCATC 6 cut(s) 31, 171, 270, 439, 576, 639
Bpu10I CCTNAGC 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 513, 679
Bse8I GATNNNNATC 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 513, 679
BseGI GGATG 2 cut(s) 454, 667
BseJI GATNNNNATC 1 cut(s) 113
BseMII CTCAG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 586, 598
BseYI CCCAGC 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 73, 200, 761
BsiHKAI GWGCWC 1 cut(s) 396
BslFI GGGAC 2 cut(s) 531, 704
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 2 cut(s) 531, 704
BsnI GGCC 3 cut(s) 73, 200, 761
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 3 cut(s) 114, 403, 497
BspACI CCGC 1 cut(s) 147
BspANI GGCC 3 cut(s) 73, 200, 761
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 616
BspPI GGATC 2 cut(s) 411, 505
BspQI GCTCTTC 1 cut(s) 384
BssECI CCNNGG 2 cut(s) 513, 679
BssMI GATC 3 cut(s) 114, 403, 497
BssT1I CCWWGG 2 cut(s) 513, 679
Bst4CI ACNGT 3 cut(s) 238, 430, 769
Bst6I CTCTTC 1 cut(s) 384
BstAPI GCANNNNNTGC 1 cut(s) 596
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 2 cut(s) 454, 667
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 3 cut(s) 117, 406, 500
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 3 cut(s) 114, 403, 497
BstMWI GCNNNNNNNGC 2 cut(s) 596, 608
BstNSI RCATGY 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 612
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 586, 598
BstX2I RGATCY 2 cut(s) 403, 497
BstYI RGATCY 2 cut(s) 403, 497
BsuRI GGCC 3 cut(s) 73, 200, 761
BtsCI GGATG 2 cut(s) 454, 667
CfoI GCGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 239
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 3 cut(s) 45, 400, 801
CviJI RGCY 9 cut(s) 5, 73, 103, 200, 272, 394, 556, 611, 761
CviKI_1 RGCY 9 cut(s) 5, 73, 103, 200, 272, 394, 556, 611, 761
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 1 cut(s) 150
DpnI GATC 3 cut(s) 116, 405, 499
DpnII GATC 3 cut(s) 114, 403, 497
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 2 cut(s) 513, 679
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 396
Eco32I GATATC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 507
EcoRV GATATC 1 cut(s) 159
EcoT14I CCWWGG 2 cut(s) 513, 679
EcoT22I ATGCAT 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 2 cut(s) 513, 679
FaeI CATG 3 cut(s) 48, 403, 804
FaqI GGGAC 2 cut(s) 531, 704
FatI CATG 3 cut(s) 44, 399, 800
FauNDI CATATG 1 cut(s) 592
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 147, 600, 612
FokI GGATG 2 cut(s) 461, 674
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 3 cut(s) 147, 600, 612
FspBI CTAG 1 cut(s) 504
GlaI GCGC 1 cut(s) 185
GluI GCNGC 3 cut(s) 147, 600, 612
GsaI CCCAGC 1 cut(s) 287
HaeIII GGCC 3 cut(s) 73, 200, 761
HhaI GCGC 1 cut(s) 186
Hin1II CATG 3 cut(s) 48, 403, 804
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 3 cut(s) 257, 298, 335
HphI GGTGA 1 cut(s) 107
Hpy188III TCNNGA 3 cut(s) 575, 634, 644
HpyAV CCTTC 1 cut(s) 631
HpyCH4III ACNGT 3 cut(s) 238, 430, 769
HpyCH4V TGCA 7 cut(s) 11, 44, 194, 532, 561, 590, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 608
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 3 cut(s) 48, 403, 804
HspAI GCGC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 3 cut(s) 114, 403, 497
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 2 cut(s) 287, 553
LpnPI CCDG 7 cut(s) 13, 254, 255, 269, 588, 593, 684
Lsp1109I GCAGC 2 cut(s) 586, 598
LweI GCATC 6 cut(s) 31, 171, 270, 439, 576, 639
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 3 cut(s) 95, 664, 692
MalI GATC 3 cut(s) 116, 405, 499
MboI GATC 3 cut(s) 114, 403, 497
MboII GAAGA 3 cut(s) 153, 297, 401
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 2 cut(s) 403, 497
MhlI GDGCHC 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 761
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 2 cut(s) 251, 292
MmeI TCCRAC 1 cut(s) 639
MnlI CCTC 4 cut(s) 145, 190, 340, 438
Mox20I TGGCCA 1 cut(s) 761
Mph1103I ATGCAT 1 cut(s) 46
MscI TGGCCA 1 cut(s) 761
MseI TTAA 4 cut(s) 51, 233, 543, 773
MslI CAYNNNNRTG 1 cut(s) 805
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 149
MunI CAATTG 1 cut(s) 585
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 596, 608
NdeI CATATG 1 cut(s) 592
NdeII GATC 3 cut(s) 114, 403, 497
NlaIII CATG 3 cut(s) 48, 403, 804
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 46
NspI RCATGY 1 cut(s) 48
PceI AGGCCT 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 384
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 3 cut(s) 148, 601, 613
PleI GAGTC 2 cut(s) 251, 292
PpsI GAGTC 2 cut(s) 251, 292
Psp124BI GAGCTC 1 cut(s) 396
PspFI CCCAGC 1 cut(s) 283
PstI CTGCAG 1 cut(s) 616
PsuI RGATCY 2 cut(s) 403, 497
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 805
SacI GAGCTC 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 4 cut(s) 51, 233, 543, 773
SatI GCNGC 3 cut(s) 147, 600, 612
Sau3AI GATC 3 cut(s) 114, 403, 497
SchI GAGTC 2 cut(s) 251, 292
SduI GDGCHC 1 cut(s) 396
SetI ASST 4 cut(s) 84, 396, 558, 642
SfaNI GCATC 6 cut(s) 31, 171, 270, 439, 576, 639
SfcI CTRYAG 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 805
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 396
StuI AGGCCT 1 cut(s) 200
StyI CCWWGG 2 cut(s) 513, 679
TaaI ACNGT 3 cut(s) 238, 430, 769
TaqI TCGA 2 cut(s) 345, 633
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 4 cut(s) 51, 233, 543, 773
Tru9I TTAA 4 cut(s) 51, 233, 543, 773
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 2 cut(s) 599, 611
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 4 cut(s) 77, 144, 327, 789
XapI RAATTY 3 cut(s) 32, 383, 507
XceI RCATGY 1 cut(s) 48
XspI CTAG 1 cut(s) 504
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.