RchiOBHm_Chr6g0255201

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018927
Physical Location & Seq
Reverse (-)
10532965 .. 10533470
506 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22891

Sequence Viewer

Length: 441 bp
ATGGCGGCTCCCCCGATCAAATCGATCCAGTGCTTTGGCCGCAAGAAGACGGCGGTGGCCATCACCTACTGCAAGGAAGGCCACGGCTTGATCAAGATCAACGACTACCCAATCAAGCTCGTGGAGCCGGAGATCCTCCGCTTCAAGGCCTACGAGACCATCCTTCTGCTCGGACGACACTGTTTCGCCAGCGTCGACATGATGATCCGTGTCAAGGGAGGAGGTCACACTTCTCAGATCTACTCCATCCGTCATAGCATCGCCAAGGCCTTGGTCGTTTATTACCATAAGTTCGTGGATGAGCAGAGCAAGAAGGAAATCAAGGACATTCTCGTCATGTATGACCGTACTCTTCTAGTCGCTGATCCAAGGCGCTGTGAGCCAGAGCTAGGTTTCGAGTGGCTGGTGGAGGGTGCGGTTGGGCATGAAGTCCCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

146

Amino Acids

16.64

Weight (kDa)

9.03

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 13 - 128 2.1e-25 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018927)

Species Orthologous Gene IDs
pyrus_communis pycom10g08020
rosa_chinensis RchiOBHm_Chr6g0255201
rosa_multiflora Rmu_sc0001879.1_g000005
rosa_roxburghii Rroxscaffold_1G00030090
rosa_rugosa Rorug02G0279800
rosa_samantha Rh3BG175600 Rh3CG166700 Rh4AG078700 Rh4DG213700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 195
AciI CCGC 5 cut(s) 5, 40, 53, 139, 416
AclWI GGATC 4 cut(s) 19, 127, 199, 359
AcoI YGGCCR 2 cut(s) 37, 57
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 3 cut(s) 145, 214, 389
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 2 cut(s) 118, 388
AluI AGCT 2 cut(s) 118, 388
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 4 cut(s) 19, 127, 199, 359
AoxI GGCC 5 cut(s) 37, 57, 79, 147, 267
AspLEI GCGC 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 55
BalI TGGCCA 1 cut(s) 59
BauI CACGAG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 53
BccI CCATC 3 cut(s) 68, 167, 254
BceAI ACGGC 2 cut(s) 66, 100
BclI TGATCA 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 2 cut(s) 356, 389
BfoI RGCGCY 1 cut(s) 376
BglII AGATCT 1 cut(s) 237
BisI GCNGC 2 cut(s) 6, 40
BlsI GCNGC 2 cut(s) 7, 41
BmiI GGNNCC 2 cut(s) 9, 126
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 4 cut(s) 82, 264, 270, 368
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 214, 389
Bse1I ACTGG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 95
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 4 cut(s) 82, 264, 270, 368
BseGI GGATG 3 cut(s) 159, 246, 304
BseJI GATNNNNATC 1 cut(s) 95
BseLI CCNNNNNNNGG 3 cut(s) 145, 214, 389
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 234
BshFI GGCC 5 cut(s) 39, 59, 81, 149, 269
BshVI ATCGAT 1 cut(s) 23
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 3 cut(s) 145, 214, 389
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 5 cut(s) 39, 59, 81, 149, 269
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 8 cut(s) 15, 24, 90, 96, 132, 204, 237, 364
BspACI CCGC 5 cut(s) 5, 40, 53, 139, 416
BspANI GGCC 5 cut(s) 39, 59, 81, 149, 269
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 9, 126
BspPI GGATC 4 cut(s) 19, 127, 199, 359
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 82, 264, 270, 368
BssMI GATC 8 cut(s) 15, 24, 90, 96, 132, 204, 237, 364
BssSI CACGAG 1 cut(s) 119
BssT1I CCWWGG 3 cut(s) 264, 270, 368
Bst2BI CACGAG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 182, 347
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 3 cut(s) 159, 246, 304
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 8 cut(s) 18, 27, 93, 99, 135, 207, 240, 367
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 8 cut(s) 15, 24, 90, 96, 132, 204, 237, 364
BstMWI GCNNNNNNNGC 4 cut(s) 39, 78, 124, 379
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 2 cut(s) 132, 237
BstXI CCANNNNNNTGG 2 cut(s) 35, 271
BstYI RGATCY 2 cut(s) 132, 237
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 5 cut(s) 39, 59, 81, 149, 269
BsuTUI ATCGAT 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 3 cut(s) 159, 246, 304
BtsIMutI CAGTG 2 cut(s) 35, 178
Cac8I GCNNGC 1 cut(s) 190
CfoI GCGC 1 cut(s) 375
ClaI ATCGAT 1 cut(s) 23
CseI GACGC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 348
CviAII CATG 3 cut(s) 199, 337, 425
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 1 cut(s) 234
DpnI GATC 8 cut(s) 17, 26, 92, 98, 134, 206, 239, 366
DpnII GATC 8 cut(s) 15, 24, 90, 96, 132, 204, 237, 364
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 2 cut(s) 37, 57
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 3 cut(s) 264, 270, 368
Eco147I AGGCCT 2 cut(s) 149, 269
Eco31I GGTCTC 1 cut(s) 149
EcoT14I CCWWGG 3 cut(s) 264, 270, 368
ErhI CCWWGG 3 cut(s) 264, 270, 368
FaeI CATG 3 cut(s) 202, 340, 428
FaiI YATR 6 cut(s) 200, 255, 288, 338, 342, 426
FaqI GGGAC 1 cut(s) 416
FatI CATG 3 cut(s) 198, 336, 424
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 6, 40
FokI GGATG 3 cut(s) 146, 233, 311
Fsp4HI GCNGC 2 cut(s) 6, 40
FspBI CTAG 2 cut(s) 356, 389
GlaI GCGC 1 cut(s) 374
GluI GCNGC 2 cut(s) 6, 40
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 5 cut(s) 39, 59, 81, 149, 269
HapII CCGG 1 cut(s) 128
HgaI GACGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 375
Hin1II CATG 3 cut(s) 202, 340, 428
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 173, 237
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 71, 173, 307
HpyCH4III ACNGT 2 cut(s) 182, 347
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 78, 124, 379
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 3 cut(s) 202, 340, 428
HspAI GCGC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 8 cut(s) 15, 24, 90, 96, 132, 204, 237, 364
LmnI GCTCC 2 cut(s) 13, 124
LpnPI CCDG 5 cut(s) 41, 141, 202, 389, 396
LweI GCATC 1 cut(s) 267
MaeI CTAG 2 cut(s) 356, 389
MaeIII GTNAC 1 cut(s) 224
MalI GATC 8 cut(s) 17, 26, 92, 98, 134, 206, 239, 366
MboI GATC 8 cut(s) 15, 24, 90, 96, 132, 204, 237, 364
MboII GAAGA 2 cut(s) 58, 344
MflI RGATCY 2 cut(s) 132, 237
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MnlI CCTC 4 cut(s) 146, 212, 215, 403
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 1 cut(s) 128
MwoI GCNNNNNNNGC 4 cut(s) 39, 78, 124, 379
NdeII GATC 8 cut(s) 15, 24, 90, 96, 132, 204, 237, 364
NlaIII CATG 3 cut(s) 202, 340, 428
NlaIV GGNNCC 2 cut(s) 9, 126
NmuCI GTSAC 1 cut(s) 224
PceI AGGCCT 2 cut(s) 149, 269
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PkrI GCNGC 2 cut(s) 7, 41
PspN4I GGNNCC 2 cut(s) 9, 126
PsuI RGATCY 2 cut(s) 132, 237
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SalI GTCGAC 1 cut(s) 194
SatI GCNGC 2 cut(s) 6, 40
Sau3AI GATC 8 cut(s) 15, 24, 90, 96, 132, 204, 237, 364
SetI ASST 5 cut(s) 68, 120, 226, 390, 394
SfaNI GCATC 1 cut(s) 267
SseBI AGGCCT 2 cut(s) 149, 269
SsiI CCGC 5 cut(s) 5, 40, 53, 139, 416
SspMI CTAG 2 cut(s) 356, 389
StuI AGGCCT 2 cut(s) 149, 269
StyI CCWWGG 3 cut(s) 264, 270, 368
TaaI ACNGT 2 cut(s) 182, 347
TaqI TCGA 3 cut(s) 23, 195, 396
TauI GCSGC 2 cut(s) 8, 42
TscAI CASTG 2 cut(s) 35, 185
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 441
TspGWI ACGGA 2 cut(s) 197, 239
TspRI CASTG 2 cut(s) 35, 185
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 2 cut(s) 356, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.