Rroxscaffold_1G00030090

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018927
Physical Location & Seq
Forward (+)
39418831 .. 39419374
544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030090.1

Sequence Viewer

Length: 489 bp
ATGGCAGCTCCCCCAATCAAATTGATCCGGCTTGATCAAGATCAACGGCTGCCCAATCAAGCTCGTGGAGCCGAGATCCTCCGCTTCAAGGCCTACGAGCCCATCCTTCGCTCGACGACACCATTTCGCCGGCGTCGACATGAGGATCGGCGTCAAGGGAGGAGGTCACACTTCTCGGATCTACGCCATCCGTTAGAGCATCGCCAAGGCCTTGGTCGCTTATTACCGAAGTTCGTGGATGAGGAGAGCAAGAAGGAAATCAAGGACATTCTCGTCATGTATGATAGTACTTTCCTCATCGTTGATCCAAGGCGCCGCGAGCCGCAGCTAGGTTTCGACTTTCGAGTGGTCGGTGTTGTCGGTTTCGAATCGTGCCTTTTAGAGACAGACCGTTTCGGACCAGATTTGTATGAGGCGGTGGAGGGTAAGATGAATGATAAGGAACATAATGATGGGGATGGGCGTAGGGATTGTGGTGGTGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

162

Amino Acids

18.98

Weight (kDa)

9.0

Isoelectric Point (pI)

74.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018927)

Species Orthologous Gene IDs
pyrus_communis pycom10g08020
rosa_chinensis RchiOBHm_Chr6g0255201
rosa_multiflora Rmu_sc0001879.1_g000005
rosa_roxburghii Rroxscaffold_1G00030090
rosa_rugosa Rorug02G0279800
rosa_samantha Rh3BG175600 Rh3CG166700 Rh4AG078700 Rh4DG213700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 312
AccI GTMKAC 1 cut(s) 136
AccII CGCG 1 cut(s) 318
AciI CCGC 4 cut(s) 82, 316, 323, 416
AclWI GGATC 5 cut(s) 19, 70, 153, 186, 299
AcyI GRCGYC 3 cut(s) 133, 151, 313
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 88, 329
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 3 cut(s) 8, 62, 328
AluI AGCT 3 cut(s) 8, 62, 328
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 5 cut(s) 19, 70, 153, 186, 299
AoxI GGCC 2 cut(s) 90, 208
ApeKI GCWGC 3 cut(s) 5, 49, 325
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 398
AsuII TTCGAA 1 cut(s) 366
AvaII GGWCC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 312
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 63
BbvI GCAGC 3 cut(s) 17, 36, 337
BccI CCATC 4 cut(s) 110, 195, 446, 452
BceAI ACGGC 1 cut(s) 62
BclI TGATCA 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 316
BisI GCNGC 5 cut(s) 6, 50, 316, 323, 326
BlsI GCNGC 5 cut(s) 7, 51, 317, 324, 327
BmcAI AGTACT 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 70, 314
BmsI GCATC 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 3 cut(s) 133, 151, 313
BsaJI CCNNGG 3 cut(s) 205, 211, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 329
Bse118I RCCGGY 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 39
BseDI CCNNGG 3 cut(s) 205, 211, 308
BseGI GGATG 4 cut(s) 102, 187, 244, 463
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 88, 329
BseRI GAGGAG 2 cut(s) 175, 257
BseXI GCAGC 3 cut(s) 17, 36, 337
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 92, 210
BshNI GGYRCC 1 cut(s) 312
BsiSI CCGG 2 cut(s) 28, 130
BslI CCNNNNNNNGG 2 cut(s) 88, 329
BsmAI GTCTC 1 cut(s) 377
BsnI GGCC 2 cut(s) 92, 210
Bsp119I TTCGAA 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 8 cut(s) 24, 34, 40, 75, 145, 178, 304, 481
BspACI CCGC 4 cut(s) 82, 316, 323, 416
BspANI GGCC 2 cut(s) 92, 210
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 70, 314
BspPI GGATC 5 cut(s) 19, 70, 153, 186, 299
BspT104I TTCGAA 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 129
BssECI CCNNGG 3 cut(s) 205, 211, 308
BssMI GATC 8 cut(s) 24, 34, 40, 75, 145, 178, 304, 481
BssNI GRCGYC 3 cut(s) 133, 151, 313
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 3 cut(s) 205, 211, 308
Bst2BI CACGAG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 392
BstACI GRCGYC 3 cut(s) 133, 151, 313
BstBI TTCGAA 1 cut(s) 366
BstC8I GCNNGC 2 cut(s) 131, 320
BstF5I GGATG 4 cut(s) 102, 187, 244, 463
BstFNI CGCG 1 cut(s) 318
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 8 cut(s) 27, 37, 43, 78, 148, 181, 307, 484
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 8 cut(s) 24, 34, 40, 75, 145, 178, 304, 481
BstMWI GCNNNNNNNGC 3 cut(s) 68, 216, 319
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 3 cut(s) 17, 36, 337
BstX2I RGATCY 2 cut(s) 75, 178
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 2 cut(s) 75, 178
BsuRI GGCC 2 cut(s) 92, 210
BtgZI GCGATG 1 cut(s) 185
BtsCI GGATG 4 cut(s) 102, 187, 244, 463
Cac8I GCNNGC 2 cut(s) 131, 320
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 2 cut(s) 122, 140
Csp6I GTAC 1 cut(s) 288
CviAII CATG 2 cut(s) 140, 277
CviQI GTAC 1 cut(s) 288
DinI GGCGCC 1 cut(s) 314
DpnI GATC 8 cut(s) 26, 36, 42, 77, 147, 180, 306, 483
DpnII GATC 8 cut(s) 24, 34, 40, 75, 145, 178, 304, 481
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
Eco130I CCWWGG 3 cut(s) 205, 211, 308
Eco147I AGGCCT 2 cut(s) 92, 210
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 398
EcoT14I CCWWGG 3 cut(s) 205, 211, 308
EcoT38I GRGCYC 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 314
EheI GGCGCC 1 cut(s) 314
ErhI CCWWGG 3 cut(s) 205, 211, 308
FaeI CATG 2 cut(s) 143, 280
FaiI YATR 5 cut(s) 141, 278, 282, 411, 447
FatI CATG 2 cut(s) 139, 276
FbaI TGATCA 1 cut(s) 34
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 5 cut(s) 6, 50, 316, 323, 326
FokI GGATG 4 cut(s) 89, 174, 251, 470
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 5 cut(s) 6, 50, 316, 323, 326
FspBI CTAG 1 cut(s) 329
GlaI GCGC 1 cut(s) 314
GluI GCNGC 5 cut(s) 6, 50, 316, 323, 326
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 2 cut(s) 92, 210
HapII CCGG 2 cut(s) 28, 130
HgaI GACGC 2 cut(s) 122, 140
HhaI GCGC 1 cut(s) 315
Hin1I GRCGYC 3 cut(s) 133, 151, 313
Hin1II CATG 2 cut(s) 143, 280
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HincII GTYRAC 1 cut(s) 137
HindII GTYRAC 1 cut(s) 137
HinfI GANTC 1 cut(s) 368
HpaII CCGG 2 cut(s) 28, 130
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 178, 398
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 2 cut(s) 118, 138
HpyAV CCTTC 2 cut(s) 116, 247
HpyCH4III ACNGT 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 216, 319
Hsp92I GRCGYC 3 cut(s) 133, 151, 313
Hsp92II CATG 2 cut(s) 143, 280
HspAI GCGC 1 cut(s) 313
KasI GGCGCC 1 cut(s) 312
KroI GCCGGC 1 cut(s) 129
KroNI GCCGGC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 8 cut(s) 24, 34, 40, 75, 145, 178, 304, 481
LmnI GCTCC 2 cut(s) 13, 68
LpnPI CCDG 3 cut(s) 41, 143, 414
Lsp1109I GCAGC 3 cut(s) 17, 36, 337
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 165
MalI GATC 8 cut(s) 26, 36, 42, 77, 147, 180, 306, 483
MboI GATC 8 cut(s) 24, 34, 40, 75, 145, 178, 304, 481
MflI RGATCY 2 cut(s) 75, 178
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 20
Mly113I GGCGCC 1 cut(s) 313
MnlI CCTC 8 cut(s) 89, 136, 153, 156, 235, 305, 406, 415
MreI CGCCGGCG 1 cut(s) 129
MroNI GCCGGC 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 450
MspI CCGG 2 cut(s) 28, 130
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 68, 216, 319
NaeI GCCGGC 1 cut(s) 131
NarI GGCGCC 1 cut(s) 313
NdeII GATC 8 cut(s) 24, 34, 40, 75, 145, 178, 304, 481
NgoMIV GCCGGC 1 cut(s) 129
NlaIII CATG 2 cut(s) 143, 280
NlaIV GGNNCC 2 cut(s) 70, 314
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 165
NspV TTCGAA 1 cut(s) 366
PceI AGGCCT 2 cut(s) 92, 210
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PdiI GCCGGC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 5 cut(s) 7, 51, 317, 324, 327
PluTI GGCGCC 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 70, 314
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 2 cut(s) 75, 178
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 450
SalI GTCGAC 1 cut(s) 135
SatI GCNGC 5 cut(s) 6, 50, 316, 323, 326
Sau3AI GATC 8 cut(s) 24, 34, 40, 75, 145, 178, 304, 481
Sau96I GGNCC 1 cut(s) 398
ScaI AGTACT 1 cut(s) 289
SduI GDGCHC 1 cut(s) 102
SetI ASST 5 cut(s) 10, 64, 167, 330, 334
SfaNI GCATC 1 cut(s) 208
SfoI GGCGCC 1 cut(s) 314
SfuI TTCGAA 1 cut(s) 366
SgrAI CRCCGGYG 1 cut(s) 129
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 450
Sse9I AATT 1 cut(s) 20
SseBI AGGCCT 2 cut(s) 92, 210
SsiI CCGC 4 cut(s) 82, 316, 323, 416
SspDI GGCGCC 1 cut(s) 312
SspMI CTAG 1 cut(s) 329
StuI AGGCCT 2 cut(s) 92, 210
StyI CCWWGG 3 cut(s) 205, 211, 308
TaaI ACNGT 1 cut(s) 392
TaqI TCGA 5 cut(s) 113, 136, 336, 343, 366
TasI AATT 1 cut(s) 20
TatI WGTACW 1 cut(s) 287
TauI GCSGC 2 cut(s) 318, 325
TfiI GAWTC 1 cut(s) 368
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 3 cut(s) 5, 49, 325
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 1 cut(s) 329
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.