Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0018927

Physical Location & Seq

Genomic Coordinates Forward (+)

16239276 .. 16239563

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG078700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAAGATCGACGTCAAGGGAGAAGGTCACACTTCTCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCCTTGGTCGCTTATTACCAGAAGTTCGTGGATGAGCATAGCAAGAAGGAAATCAACGACATTCTCATCATGTATGACCGTACTCTCCTCGTCGCTGATCCAAGGCGCTGCGAACCAGAGCTAGGTTTAGAGTGGCTGGTGTTGTCGATTTCAAATTGCGCCTTTTGGAGACGGACTGATTCGGACCAGATTTGTATGAGGCCGTGGAGGGTGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

95

Amino Acids

11.23

Weight (kDa)

8.5

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	2 - 62	7.9e-11	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018927)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08020
rosa_chinensis	RchiOBHm_Chr6g0255201
rosa_multiflora	Rmu_sc0001879.1_g000005
rosa_roxburghii	Rroxscaffold_1G00030090
rosa_rugosa	Rorug02G0279800
rosa_samantha	Rh3BG175600 Rh3CG166700 Rh4AG078700 Rh4DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
AclWI	GGATC	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	222
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	69, 269
ApeKI	GCWGC	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	177, 230
AspS9I	GGNCC	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	178
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmsI	GCATC	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	66, 72, 170, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
BseDI	CCNNGG	4 cut(s)	66, 72, 170, 272
BseGI	GGATG	2 cut(s)	48, 106
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	164
BshFI	GGCC	2 cut(s)	71, 271
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	71, 271
Bsp143I	GATC	3 cut(s)	6, 39, 166
BspANI	GGCC	2 cut(s)	71, 271
BspCNI	CTCAG	1 cut(s)	49
BspPI	GGATC	1 cut(s)	161
BssECI	CCNNGG	4 cut(s)	66, 72, 170, 272
BssMI	GATC	3 cut(s)	6, 39, 166
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	3 cut(s)	66, 72, 170
Bst4CI	ACNGT	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	48, 106
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	177, 230
BstKTI	GATC	3 cut(s)	9, 42, 169
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	3 cut(s)	6, 39, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	71, 271
BtgI	CCRYGG	1 cut(s)	272
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	48, 106
CfoI	GCGC	2 cut(s)	177, 230
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	4 cut(s)	71, 190, 205, 271
CviKI_1	RGCY	4 cut(s)	71, 190, 205, 271
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	3 cut(s)	8, 41, 168
DpnII	GATC	3 cut(s)	6, 39, 166
Eco130I	CCWWGG	3 cut(s)	66, 72, 170
Eco147I	AGGCCT	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	253
EcoT14I	CCWWGG	3 cut(s)	66, 72, 170
ErhI	CCWWGG	3 cut(s)	66, 72, 170
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	1 cut(s)	142
FaiI	YATR	4 cut(s)	108, 140, 144, 266
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	2 cut(s)	35, 113
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	2 cut(s)	176, 229
GluI	GCNGC	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	71, 271
HhaI	GCGC	2 cut(s)	177, 230
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	2 cut(s)	175, 228
HinP1I	GCGC	2 cut(s)	175, 228
HinfI	GANTC	1 cut(s)	248
Hpy188I	TCNGA	3 cut(s)	39, 57, 253
Hpy99I	CGWCG	2 cut(s)	14, 164
HpyAV	CCTTC	2 cut(s)	17, 109
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	2 cut(s)	175, 228
Kzo9I	GATC	3 cut(s)	6, 39, 166
LpnPI	CCDG	4 cut(s)	101, 191, 198, 269
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	3 cut(s)	8, 41, 168
MboI	GATC	3 cut(s)	6, 39, 166
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	39
MluCI	AATT	1 cut(s)	223
MnlI	CCTC	3 cut(s)	167, 261, 270
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	3 cut(s)	6, 39, 166
NlaIII	CATG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	3 cut(s)	6, 39, 166
Sau96I	GGNCC	1 cut(s)	253
SetI	ASST	4 cut(s)	15, 28, 192, 196
SfaNI	GCATC	1 cut(s)	69
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	71
SspMI	CTAG	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	71
StyI	CCWWGG	3 cut(s)	66, 72, 170
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	9, 215
TasI	AATT	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	41, 256
VpaK11BI	GGWCC	1 cut(s)	253
XspI	CTAG	1 cut(s)	191
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.