Rh3BG175600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018927
Physical Location & Seq
Forward (+)
15138564 .. 15138971
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG175600.1

Sequence Viewer

Length: 408 bp
ATGACCTCTGCAATTCCAACCATTACCATCAATCCACAGCATGTCACCTCTGCTGAATCAACACCCACTACCATAATCCCAAACCCTAAGAGAGACAGAGAGAGAGAAAGCAACAACCATGGCGGCTCCCCCGATCAAATCGATCCAGTGCTTTGGCAGCAAGAAGACGGCGATGGCCGTCACCTACTGCAAGGAAGGTCGCGGCTTGATCAAGATCAACGGCTACCCAATCAAGCTAGTGGAGCCAGAGATCCTCCGCTTCAAGGCCTACGAGACCATCCTTCTGCTCGGACGACACTGTTTCGCCAGCGTCGACATGAGGATCCGCGTCAAGGAAGGAAGTCACACTTCTCAGATCTACTCCATCTGTCAGTGCATAGCCAAGGCCTTGGTCGCTTATTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.21

Weight (kDa)

9.89

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018927)

Species Orthologous Gene IDs
pyrus_communis pycom10g08020
rosa_chinensis RchiOBHm_Chr6g0255201
rosa_multiflora Rmu_sc0001879.1_g000005
rosa_roxburghii Rroxscaffold_1G00030090
rosa_rugosa Rorug02G0279800
rosa_samantha Rh3BG175600 Rh3CG166700 Rh4AG078700 Rh4DG213700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 313
AccII CGCG 2 cut(s) 202, 328
AciI CCGC 4 cut(s) 123, 202, 257, 326
AclWI GGATC 4 cut(s) 137, 245, 317, 330
AcoI YGGCCR 1 cut(s) 175
AfiI CCNNNNNNNGG 2 cut(s) 263, 332
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 2 cut(s) 87, 267
AlwI GGATC 4 cut(s) 137, 245, 317, 330
AoxI GGCC 3 cut(s) 175, 265, 385
ApeKI GCWGC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 37, 173
BamHI GGATCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 169
BccI CCATC 4 cut(s) 35, 167, 285, 372
BceAI ACGGC 3 cut(s) 162, 184, 236
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 2 cut(s) 87, 267
BfaI CTAG 1 cut(s) 237
BglII AGATCT 1 cut(s) 355
BisI GCNGC 3 cut(s) 124, 158, 203
BlsI GCNGC 3 cut(s) 125, 159, 204
BmiI GGNNCC 3 cut(s) 127, 244, 324
BpiI GAAGAC 1 cut(s) 171
Bsa29I ATCGAT 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 118, 382, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 332
Bse1I ACTGG 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 3 cut(s) 118, 382, 388
BseGI GGATG 1 cut(s) 277
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 263, 332
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 169
Bsh1236I CGCG 2 cut(s) 202, 328
BshFI GGCC 3 cut(s) 177, 267, 387
BshVI ATCGAT 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 263, 332
BsmAI GTCTC 2 cut(s) 87, 267
BsnI GGCC 3 cut(s) 177, 267, 387
Bso31I GGTCTC 1 cut(s) 267
Bsp143I GATC 7 cut(s) 133, 142, 208, 214, 250, 322, 355
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 4 cut(s) 123, 202, 257, 326
BspANI GGCC 3 cut(s) 177, 267, 387
BspCNI CTCAG 1 cut(s) 365
BspDI ATCGAT 1 cut(s) 141
BspFNI CGCG 2 cut(s) 202, 328
BspLI GGNNCC 3 cut(s) 127, 244, 324
BspPI GGATC 4 cut(s) 137, 245, 317, 330
BspTNI GGTCTC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 3 cut(s) 118, 382, 388
BssMI GATC 7 cut(s) 133, 142, 208, 214, 250, 322, 355
BssT1I CCWWGG 3 cut(s) 118, 382, 388
Bst4CI ACNGT 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 2 cut(s) 87, 352
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 2 cut(s) 202, 328
BstKTI GATC 7 cut(s) 136, 145, 211, 217, 253, 325, 358
BstMAI GTCTC 2 cut(s) 87, 267
BstMBI GATC 7 cut(s) 133, 142, 208, 214, 250, 322, 355
BstMWI GCNNNNNNNGC 3 cut(s) 157, 242, 393
BstNSI RCATGY 1 cut(s) 44
BstUI CGCG 2 cut(s) 202, 328
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 3 cut(s) 250, 322, 355
BstXI CCANNNNNNTGG 2 cut(s) 153, 389
BstYI RGATCY 3 cut(s) 250, 322, 355
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 3 cut(s) 177, 267, 387
BsuTUI ATCGAT 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 3 cut(s) 153, 296, 378
Cac8I GCNNGC 1 cut(s) 308
ClaI ATCGAT 1 cut(s) 141
CseI GACGC 2 cut(s) 299, 317
CviAII CATG 3 cut(s) 41, 119, 317
CviJI RGCY 9 cut(s) 126, 177, 205, 223, 236, 245, 267, 381, 387
CviKI_1 RGCY 9 cut(s) 126, 177, 205, 223, 236, 245, 267, 381, 387
DdeI CTNAG 2 cut(s) 87, 352
DpnI GATC 7 cut(s) 135, 144, 210, 216, 252, 324, 357
DpnII GATC 7 cut(s) 133, 142, 208, 214, 250, 322, 355
EaeI YGGCCR 1 cut(s) 175
Eco130I CCWWGG 3 cut(s) 118, 382, 388
Eco147I AGGCCT 2 cut(s) 267, 387
Eco31I GGTCTC 1 cut(s) 267
EcoT14I CCWWGG 3 cut(s) 118, 382, 388
ErhI CCWWGG 3 cut(s) 118, 382, 388
FaeI CATG 3 cut(s) 44, 122, 320
FaiI YATR 6 cut(s) 42, 74, 120, 318, 378, 406
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 3 cut(s) 40, 118, 316
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 3 cut(s) 124, 158, 203
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 3 cut(s) 124, 158, 203
FspBI CTAG 1 cut(s) 237
GluI GCNGC 3 cut(s) 124, 158, 203
HaeIII GGCC 3 cut(s) 177, 267, 387
HgaI GACGC 2 cut(s) 299, 317
Hin1II CATG 3 cut(s) 44, 122, 320
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HinfI GANTC 1 cut(s) 56
HphI GGTGA 2 cut(s) 37, 173
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 2 cut(s) 291, 355
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 314
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 3 cut(s) 189, 291, 330
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 11, 190, 376
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 242, 393
HpyF3I CTNAG 2 cut(s) 87, 352
Hsp92II CATG 3 cut(s) 44, 122, 320
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 7 cut(s) 133, 142, 208, 214, 250, 322, 355
LmnI GCTCC 2 cut(s) 131, 242
LpnPI CCDG 3 cut(s) 159, 259, 320
Lsp1109I GCAGC 1 cut(s) 169
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 43, 179, 342
MalI GATC 7 cut(s) 135, 144, 210, 216, 252, 324, 357
MboI GATC 7 cut(s) 133, 142, 208, 214, 250, 322, 355
MboII GAAGA 1 cut(s) 176
MflI RGATCY 3 cut(s) 250, 322, 355
MluCI AATT 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 4 cut(s) 16, 58, 264, 313
MvnI CGCG 2 cut(s) 202, 328
MwoI GCNNNNNNNGC 3 cut(s) 157, 242, 393
NcoI CCATGG 1 cut(s) 118
NdeII GATC 7 cut(s) 133, 142, 208, 214, 250, 322, 355
NlaIII CATG 3 cut(s) 44, 122, 320
NlaIV GGNNCC 3 cut(s) 127, 244, 324
NmuCI GTSAC 3 cut(s) 43, 179, 342
NspI RCATGY 1 cut(s) 44
PceI AGGCCT 2 cut(s) 267, 387
PcsI WCGNNNNNNNCGW 1 cut(s) 310
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 3 cut(s) 125, 159, 204
PspN4I GGNNCC 3 cut(s) 127, 244, 324
PsuI RGATCY 3 cut(s) 250, 322, 355
SalI GTCGAC 1 cut(s) 312
SatI GCNGC 3 cut(s) 124, 158, 203
Sau3AI GATC 7 cut(s) 133, 142, 208, 214, 250, 322, 355
SetI ASST 5 cut(s) 8, 50, 186, 200, 238
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 2 cut(s) 267, 387
SsiI CCGC 4 cut(s) 123, 202, 257, 326
SspMI CTAG 1 cut(s) 237
StuI AGGCCT 2 cut(s) 267, 387
StyI CCWWGG 3 cut(s) 118, 382, 388
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 141, 313
TasI AATT 1 cut(s) 12
TauI GCSGC 2 cut(s) 126, 205
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 3 cut(s) 153, 303, 378
TseFI GTSAC 3 cut(s) 43, 179, 342
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 3 cut(s) 43, 179, 342
TspRI CASTG 3 cut(s) 153, 303, 378
XceI RCATGY 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 313
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.