RchiOBHm_Chr6g0255791

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020504
Physical Location & Seq
Forward (+)
11226651 .. 11229118
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22941

Sequence Viewer

Length: 672 bp
ATGGTGAAGAGAATCAGCCTCTTCGTTCTTCGCCTCCGACAAAAACCATCCTCCTCTTCGTTCTCTGCCTCCGACCACAACCCTCCTCCTCGTCTTCATTCTCCGGCTACAATCACAACCAGAACCGCCTCGTCCTCCTTCTTTTCAGCCTCTGACCAGCTCCTCTGCTCGAAGACGGTGAAGAGAATCATAGATCGAGGCCGACCTTTTGGAGAAAATTTGAGTTTTTTGATTTGTGTTTCATCTACCGAAGCTTTGTGGGCTGCAGTCGAGCTTTCTGGGCATTCATGTTCTGAGCTTTCTGGGCATTCTCCATATCTGAGGAGGCTTCGAACTGTGTTATCTAGTCATGAAGGTTTCTGTAGCCAGGGCTTTGATGTTACTGTACTTGAAAATGGTAGTCTTGATGATGTGGGTATCCATGGTTATTGGTTTCCCTACAGGAATATATTCAGCCTTGTTGATGAGTTGGAGATTAAACCCTTCACTAACTGGACTAAGTTTGCGCAATATTCAGCTGAGGGATTGGAGGTTGAATTTCCGGTATTTCGAGACCTTCCTCAGTTGCCAACTCCATCAGGAACCTTGTACTATTTACAGGTATATATTATTTGCTCACCCTCTTGTGTGCCATTTCTAATTCCAGTGGAAAAGTTAGCAGCCTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

223

Amino Acids

25.01

Weight (kDa)

7.0

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020504)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0123001 RchiOBHm_Chr6g0255791
rosa_roxburghii Rroxscaffold_2G00135500
rosa_rugosa Rorug03G0326700 Rorug03G0326700 Rorug04G0036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 507
AciI CCGC 1 cut(s) 126
AcsI RAATTY 2 cut(s) 217, 536
AfaI GTAC 2 cut(s) 387, 590
AgsI TTSAA 2 cut(s) 392, 536
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 5 cut(s) 160, 254, 274, 298, 518
AluI AGCT 5 cut(s) 160, 254, 274, 298, 518
Alw26I GTCTC 1 cut(s) 546
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 263, 659
ApoI RAATTY 2 cut(s) 217, 536
Asp700I GAANNNNTTC 1 cut(s) 449
AspLEI GCGC 1 cut(s) 508
AsuHPI GGTGA 3 cut(s) 16, 190, 609
AsuII TTCGAA 1 cut(s) 331
BbsI GAAGAC 2 cut(s) 86, 179
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 55, 583
BciT130I CCWGG 1 cut(s) 368
BciVI GTATCC 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 3 cut(s) 264, 361, 439
BfuI GTATCC 1 cut(s) 428
BisI GCNGC 2 cut(s) 264, 660
BlsI GCNGC 2 cut(s) 265, 661
Bme1390I CCNGG 1 cut(s) 368
BmiI GGNNCC 1 cut(s) 583
BmrFI CCNGG 1 cut(s) 368
BpiI GAAGAC 2 cut(s) 86, 179
Bpu10I CCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 2 cut(s) 367, 421
BsaWI WCCGGW 1 cut(s) 541
Bse1I ACTGG 2 cut(s) 497, 644
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 367, 421
BseGI GGATG 1 cut(s) 47
BseMII CTCAG 4 cut(s) 285, 311, 510, 575
BseNI ACTGG 2 cut(s) 497, 644
BseRI GAGGAG 5 cut(s) 43, 75, 78, 152, 337
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 201
BsiSI CCGG 2 cut(s) 104, 542
BsmAI GTCTC 1 cut(s) 546
BsmI GAATGC 2 cut(s) 283, 307
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 546
Bsp119I TTCGAA 1 cut(s) 331
Bsp143I GATC 1 cut(s) 193
Bsp19I CCATGG 1 cut(s) 421
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 4 cut(s) 286, 312, 511, 574
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 583
BspMAI CTGCAG 1 cut(s) 268
BspT104I TTCGAA 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 546
BsrI ACTGG 2 cut(s) 497, 644
BssECI CCNNGG 2 cut(s) 367, 421
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 178, 337, 385
Bst6I CTCTTC 4 cut(s) 2, 26, 61, 176
BstBI TTCGAA 1 cut(s) 331
BstDEI CTNAG 5 cut(s) 294, 320, 498, 519, 561
BstDSI CCRYGG 1 cut(s) 421
BstF5I GGATG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 260, 280, 304
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 3 cut(s) 264, 361, 439
BstV1I GCAGC 1 cut(s) 250
BstV2I GAAGAC 2 cut(s) 86, 179
BsuI GTATCC 1 cut(s) 428
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 421
BtsCI GGATG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 651
CaiI CAGNNNCTG 1 cut(s) 152
CciI TCATGA 1 cut(s) 349
CfoI GCGC 1 cut(s) 508
Csp6I GTAC 2 cut(s) 386, 589
CviAII CATG 3 cut(s) 288, 350, 422
CviQI GTAC 2 cut(s) 386, 589
DdeI CTNAG 5 cut(s) 294, 320, 498, 519, 561
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 4 cut(s) 2, 26, 61, 176
EarI CTCTTC 4 cut(s) 2, 26, 61, 176
Eco130I CCWWGG 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 3 cut(s) 291, 353, 425
FaiI YATR 8 cut(s) 191, 289, 316, 351, 423, 449, 604, 606
FatI CATG 3 cut(s) 287, 349, 421
Fnu4HI GCNGC 2 cut(s) 264, 660
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 2 cut(s) 264, 660
FspBI CTAG 1 cut(s) 345
FspI TGCGCA 1 cut(s) 507
GlaI GCGC 1 cut(s) 507
GluI GCNGC 2 cut(s) 264, 660
HaeIII GGCC 1 cut(s) 201
HapII CCGG 2 cut(s) 104, 542
HhaI GCGC 1 cut(s) 508
Hin1II CATG 3 cut(s) 291, 353, 425
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 2 cut(s) 12, 186
HpaII CCGG 2 cut(s) 104, 542
HphI GGTGA 3 cut(s) 16, 190, 609
Hpy188I TCNGA 5 cut(s) 38, 73, 154, 295, 321
Hpy188III TCNNGA 4 cut(s) 350, 404, 551, 579
HpyAV CCTTC 4 cut(s) 148, 347, 493, 566
HpyCH4III ACNGT 3 cut(s) 178, 337, 385
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 280, 304
HpyF3I CTNAG 5 cut(s) 294, 320, 498, 519, 561
Hsp92II CATG 3 cut(s) 291, 353, 425
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 165
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 379
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 7 cut(s) 13, 19, 20, 48, 86, 184, 193
MluCI AATT 3 cut(s) 217, 536, 639
MmeI TCCRAC 3 cut(s) 61, 96, 450
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 2 cut(s) 104, 542
MspR9I CCNGG 1 cut(s) 368
Mva1269I GAATGC 2 cut(s) 283, 307
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 260, 280, 304
NcoI CCATGG 1 cut(s) 421
NdeII GATC 1 cut(s) 193
NlaIII CATG 3 cut(s) 291, 353, 425
NlaIV GGNNCC 1 cut(s) 583
NsbI TGCGCA 1 cut(s) 507
NspV TTCGAA 1 cut(s) 331
PagI TCATGA 1 cut(s) 349
PctI GAATGC 2 cut(s) 283, 307
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 2 cut(s) 12, 186
PkrI GCNGC 2 cut(s) 265, 661
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 583
PstI CTGCAG 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 2 cut(s) 387, 590
RsaNI GTAC 2 cut(s) 386, 589
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 2 cut(s) 264, 660
Sau3AI GATC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 368
SfcI CTRYAG 3 cut(s) 264, 361, 439
SfuI TTCGAA 1 cut(s) 331
Sse9I AATT 3 cut(s) 217, 536, 639
SsiI CCGC 1 cut(s) 126
SspI AATATT 1 cut(s) 512
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 3 cut(s) 178, 337, 385
TaqI TCGA 5 cut(s) 170, 196, 270, 331, 550
TasI AATT 3 cut(s) 217, 536, 639
TatI WGTACW 2 cut(s) 385, 588
TfiI GAWTC 2 cut(s) 12, 186
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 1 cut(s) 651
TseI GCWGC 2 cut(s) 263, 659
TspDTI ATGAA 4 cut(s) 86, 231, 276, 366
TspRI CASTG 1 cut(s) 651
XapI RAATTY 2 cut(s) 217, 536
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.