Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0020504

Physical Location & Seq

Genomic Coordinates Reverse (-)

73063743 .. 73072812

Gene Structure 9070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAATCCATGACAGTAATTGCGAAGCCAACACACGGGAACTCGACAACCGTTCAAATCCCTCATCGCAACGATGTCGTTGGCTTCTTGTTGAAGATTCCCTCTCACGGTCCTTCCGGTTCCAACGACACCGTGTTTCACTCCCGGTACCCAACGGGTCGACTCGTCGCAGCGAGCTTCGCGCAACTAGACCTTACGGTCTCGATGATGGACCAAACGACGACAAGAAAGTCAAGAAGGTTGTCGTCGTTGGCTCTGGGCCGGGCTGGCCTTGGCGCTGCCCACCACCTCTGCAACCGGGGCTTTGATGTTACTGTACTTGAAAATGATAGTGGTCTTGATGATGTGGGTATCCATGGTTATTGGTATCCCTACCGGAATATATTTAGCCTTGTTGATGAAATGGAGATTAAACCCTTCACTAACTTGGACCAAGTTTGCGCAATATTCGGTGAGGGATTGGAGGTTGAATTTCGGGTATTTCAAGACCTTCCTCGGTTGCCAACTCCTTTAGGAACCTTGTACTATTCACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

178

Amino Acids

19.76

Weight (kDa)

6.36

Isoelectric Point (pI)

18.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020504)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0123001 RchiOBHm_Chr6g0255791
rosa_roxburghii	Rroxscaffold_2G00135500
rosa_rugosa	Rorug03G0326700 Rorug03G0326700 Rorug04G0036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	197, 229
Acc16I	TGCGCA	1 cut(s)	442
Acc65I	GGTACC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	470
AfaI	GTAC	3 cut(s)	149, 318, 524
AfiI	CCNNNNNNNGG	2 cut(s)	35, 107
AgsI	TTSAA	5 cut(s)	56, 94, 323, 470, 485
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	205
AoxI	GGCC	2 cut(s)	259, 268
ApeKI	GCWGC	2 cut(s)	170, 278
ApoI	RAATTY	1 cut(s)	470
Asp718I	GGTACC	1 cut(s)	147
AspLEI	GCGC	3 cut(s)	184, 278, 443
AspS9I	GGNCC	4 cut(s)	110, 211, 259, 430
AsuC2I	CCSGG	3 cut(s)	145, 263, 299
AsuHPI	GGTGA	1 cut(s)	464
AvaII	GGWCC	3 cut(s)	110, 211, 430
BanI	GGYRCC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	182, 265
BccI	CCATC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciVI	GTATCC	2 cut(s)	362, 378
BcnI	CCSGG	3 cut(s)	145, 263, 299
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	279
BfuI	GTATCC	2 cut(s)	362, 378
BglI	GCCNNNNNGGC	1 cut(s)	267
BisI	GCNGC	2 cut(s)	171, 279
BlsI	GCNGC	2 cut(s)	172, 280
Bme1390I	CCNGG	3 cut(s)	145, 263, 299
Bme18I	GGWCC	3 cut(s)	110, 211, 430
BmgT120I	GGNCC	4 cut(s)	110, 211, 259, 430
BmiI	GGNNCC	3 cut(s)	121, 149, 517
BmrFI	CCNGG	3 cut(s)	145, 263, 299
BpuMI	CCSGG	3 cut(s)	145, 263, 299
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	4 cut(s)	271, 298, 355, 494
BsaWI	WCCGGW	2 cut(s)	116, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 107
BseDI	CCNNGG	4 cut(s)	271, 298, 355, 494
BseLI	CCNNNNNNNGG	2 cut(s)	35, 107
BseXI	GCAGC	2 cut(s)	182, 265
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	261, 270
BshNI	GGYRCC	1 cut(s)	147
BsiSI	CCGG	5 cut(s)	117, 145, 262, 298, 376
BslI	CCNNNNNNNGG	2 cut(s)	35, 107
BsmAI	GTCTC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	261, 270
Bso31I	GGTCTC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	355
BspANI	GGCC	2 cut(s)	261, 270
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	3 cut(s)	121, 149, 517
BspT107I	GGYRCC	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	205
BssECI	CCNNGG	4 cut(s)	271, 298, 355, 494
BssT1I	CCWWGG	2 cut(s)	271, 355
Bst4CI	ACNGT	7 cut(s)	16, 52, 110, 133, 199, 316, 534
BstC8I	GCNNGC	2 cut(s)	175, 268
BstDSI	CCRYGG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	182
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	3 cut(s)	184, 278, 443
BstMAI	GTCTC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 267, 300
BstSCI	CCNGG	3 cut(s)	143, 261, 297
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	182, 265
BsuI	GTATCC	2 cut(s)	362, 378
BsuRI	GGCC	2 cut(s)	261, 270
BtgI	CCRYGG	1 cut(s)	355
BtgZI	GCGATG	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	175, 268
CfoI	GCGC	3 cut(s)	184, 278, 443
Cfr13I	GGNCC	4 cut(s)	110, 211, 259, 430
Csp6I	GTAC	3 cut(s)	148, 317, 523
CviAII	CATG	2 cut(s)	10, 356
CviJI	RGCY	9 cut(s)	28, 84, 177, 254, 261, 266, 270, 303, 390
CviKI_1	RGCY	9 cut(s)	28, 84, 177, 254, 261, 266, 270, 303, 390
CviQI	GTAC	3 cut(s)	148, 317, 523
DrdI	GACNNNNNNGTC	2 cut(s)	197, 229
DseDI	GACNNNNNNGTC	2 cut(s)	197, 229
Eco130I	CCWWGG	2 cut(s)	271, 355
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	3 cut(s)	110, 211, 430
EcoT14I	CCWWGG	2 cut(s)	271, 355
ErhI	CCWWGG	2 cut(s)	271, 355
FaeI	CATG	2 cut(s)	13, 359
FaiI	YATR	3 cut(s)	11, 357, 383
FatI	CATG	2 cut(s)	9, 355
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	171, 279
Fsp4HI	GCNGC	2 cut(s)	171, 279
FspBI	CTAG	1 cut(s)	188
FspI	TGCGCA	1 cut(s)	442
GlaI	GCGC	3 cut(s)	183, 277, 442
GluI	GCNGC	2 cut(s)	171, 279
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	261, 270
HapII	CCGG	5 cut(s)	117, 145, 262, 298, 376
HhaI	GCGC	3 cut(s)	184, 278, 443
Hin1II	CATG	2 cut(s)	13, 359
Hin6I	GCGC	3 cut(s)	182, 276, 441
HinP1I	GCGC	3 cut(s)	182, 276, 441
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HinfI	GANTC	3 cut(s)	5, 97, 162
HpaII	CCGG	5 cut(s)	117, 145, 262, 298, 376
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188III	TCNNGA	4 cut(s)	202, 234, 338, 485
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	3 cut(s)	170, 223, 250
HpyAV	CCTTC	4 cut(s)	123, 231, 427, 500
HpyCH4III	ACNGT	7 cut(s)	16, 52, 110, 133, 199, 316, 534
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 267, 300
Hsp92II	CATG	2 cut(s)	13, 359
HspAI	GCGC	3 cut(s)	182, 276, 441
KpnI	GGTACC	1 cut(s)	151
LpnPI	CCDG	7 cut(s)	130, 158, 242, 252, 275, 311, 389
Lsp1109I	GCAGC	2 cut(s)	182, 265
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	310
MboII	GAAGA	1 cut(s)	106
MluCI	AATT	2 cut(s)	18, 470
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	72, 112, 299, 448, 457, 504
MseI	TTAA	1 cut(s)	411
MspI	CCGG	5 cut(s)	117, 145, 262, 298, 376
MspR9I	CCNGG	3 cut(s)	145, 263, 299
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	3 cut(s)	179, 267, 300
NciI	CCSGG	3 cut(s)	145, 263, 299
NcoI	CCATGG	1 cut(s)	355
NlaIII	CATG	2 cut(s)	13, 359
NlaIV	GGNNCC	3 cut(s)	121, 149, 517
NsbI	TGCGCA	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	5, 97
PkrI	GCNGC	2 cut(s)	172, 280
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PspN4I	GGNNCC	3 cut(s)	121, 149, 517
PspPI	GGNCC	4 cut(s)	110, 211, 259, 430
RsaI	GTAC	3 cut(s)	149, 318, 524
RsaNI	GTAC	3 cut(s)	148, 317, 523
SalI	GTCGAC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	171, 279
Sau96I	GGNCC	4 cut(s)	110, 211, 259, 430
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	145, 263, 299
SetI	ASST	7 cut(s)	179, 195, 242, 291, 468, 492, 521
SfiI	GGCCNNNNNGGCC	1 cut(s)	267
SinI	GGWCC	3 cut(s)	110, 211, 430
Sse9I	AATT	2 cut(s)	18, 470
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	3 cut(s)	143, 261, 297
StyI	CCWWGG	2 cut(s)	271, 355
TaaI	ACNGT	7 cut(s)	16, 52, 110, 133, 199, 316, 534
TaqI	TCGA	3 cut(s)	44, 160, 203
TasI	AATT	2 cut(s)	18, 470
TatI	WGTACW	2 cut(s)	316, 522
TfiI	GAWTC	2 cut(s)	5, 97
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	2 cut(s)	170, 278
TspDTI	ATGAA	1 cut(s)	414
VpaK11BI	GGWCC	3 cut(s)	110, 211, 430
XapI	RAATTY	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.