RchiOBHm_Chr6g0281831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020565
Physical Location & Seq
Forward (+)
45161549 .. 45162647
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25279

Sequence Viewer

Length: 264 bp
ATGGAGGCCATGTTTTTGATCTGTTTGATCAGAGATTCAGAGGATGTTTTTGATCTGTTTGATCTGTTTTTGAGTTCGCCAACACCAGCGATCCGGATCGCGAACGCCCCGCGATTGGGTTCGTTCGATCCGGAACGCGAGTCGCCGGCACAGGCAGCGTTTCCGGTGACTTTGCTTCGTTCAACTGTGTCTGGGCGACCATCGGGTGCCTCTCTATTCAGGAGTGTCCTAGCGGTCGCCACTTCTTCCACCTCTCCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.33

Weight (kDa)

4.81

Isoelectric Point (pI)

71.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020565)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0281831
rosa_multiflora Rmu_sc0003577.1_g000006
rosa_roxburghii Rroxscaffold_1G00063970
rosa_samantha Rh5AG096900 Rh5BG093400 Rh5DG092600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AccII CGCG 3 cut(s) 101, 112, 138
AccIII TCCGGA 2 cut(s) 93, 130
AciI CCGC 2 cut(s) 110, 233
AclWI GGATC 3 cut(s) 85, 104, 122
AfiI CCNNNNNNNGG 2 cut(s) 115, 116
AgsI TTSAA 1 cut(s) 183
AlwI GGATC 3 cut(s) 85, 104, 122
Aor13HI TCCGGA 2 cut(s) 93, 130
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 178
BanI GGYRCC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 208
BclI TGATCA 1 cut(s) 27
BfaI CTAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 95
BsaWI WCCGGW 3 cut(s) 93, 130, 163
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 116
Bse118I RCCGGY 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 95
BseAI TCCGGA 2 cut(s) 93, 130
BseGI GGATG 1 cut(s) 49
BseJI GATNNNNATC 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 115, 116
BseXI GCAGC 1 cut(s) 167
Bsh1236I CGCG 3 cut(s) 101, 112, 138
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 4 cut(s) 94, 131, 146, 164
BslI CCNNNNNNNGG 2 cut(s) 115, 116
BsnI GGCC 1 cut(s) 8
Bsp13I TCCGGA 2 cut(s) 93, 130
Bsp143I GATC 7 cut(s) 18, 27, 52, 61, 90, 96, 127
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 2 cut(s) 110, 233
BspANI GGCC 1 cut(s) 8
BspEI TCCGGA 2 cut(s) 93, 130
BspFNI CGCG 3 cut(s) 101, 112, 138
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 3 cut(s) 85, 104, 122
BspT107I GGYRCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssMI GATC 7 cut(s) 18, 27, 52, 61, 90, 96, 127
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 147
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 3 cut(s) 101, 112, 138
BstKTI GATC 7 cut(s) 21, 30, 55, 64, 93, 99, 130
BstMBI GATC 7 cut(s) 18, 27, 52, 61, 90, 96, 127
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstUI CGCG 3 cut(s) 101, 112, 138
BstV1I GCAGC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 49
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 145
CviAII CATG 1 cut(s) 10
CviJI RGCY 1 cut(s) 8
CviKI_1 RGCY 1 cut(s) 8
DpnI GATC 7 cut(s) 20, 29, 54, 63, 92, 98, 129
DpnII GATC 7 cut(s) 18, 27, 52, 61, 90, 96, 127
FaeI CATG 1 cut(s) 13
FaiI YATR 1 cut(s) 11
FatI CATG 1 cut(s) 9
FauI CCCGC 1 cut(s) 117
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 8
HapII CCGG 4 cut(s) 94, 131, 146, 164
Hin1II CATG 1 cut(s) 13
HinfI GANTC 2 cut(s) 35, 140
HpaII CCGG 4 cut(s) 94, 131, 146, 164
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 32, 40
Hpy188III TCNNGA 4 cut(s) 94, 100, 131, 220
HpyCH4III ACNGT 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
Hsp92II CATG 1 cut(s) 13
Kpn2I TCCGGA 2 cut(s) 93, 130
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 7 cut(s) 18, 27, 52, 61, 90, 96, 127
LpnPI CCDG 8 cut(s) 99, 107, 137, 144, 159, 177, 177, 205
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 166
MalI GATC 7 cut(s) 20, 29, 54, 63, 92, 98, 129
MboI GATC 7 cut(s) 18, 27, 52, 61, 90, 96, 127
MboII GAAGA 1 cut(s) 237
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 34, 220, 262
MroI TCCGGA 2 cut(s) 93, 130
MroNI GCCGGC 1 cut(s) 145
MspI CCGG 4 cut(s) 94, 131, 146, 164
MvnI CGCG 3 cut(s) 101, 112, 138
MwoI GCNNNNNNNGC 1 cut(s) 155
NaeI GCCGGC 1 cut(s) 147
NdeII GATC 7 cut(s) 18, 27, 52, 61, 90, 96, 127
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 166
NruI TCGCGA 1 cut(s) 101
PdiI GCCGGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 208
RruI TCGCGA 1 cut(s) 101
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 7 cut(s) 18, 27, 52, 61, 90, 96, 127
SchI GAGTC 1 cut(s) 149
SetI ASST 1 cut(s) 254
Sse9I AATT 1 cut(s) 258
SsiI CCGC 2 cut(s) 110, 233
SspMI CTAG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 126
TasI AATT 1 cut(s) 258
TfiI GAWTC 1 cut(s) 35
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 166
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.