Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0020565

Physical Location & Seq

Genomic Coordinates Reverse (-)

85828389 .. 85831035

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCCATTCTCGAGAGTAAAGGCTGAGATTTTGAGTTTTTTGAGAAATTATCCTCTAGTTCTTGTGGTGGCAAAGTTGATCGGAGATGAGGTGGGCTTCCCCTTCAACTCTTTACCAGTGATTCCAGCCCTATTTCTGTACTTCCGAGAGCTCTATAGGATGCCGACGTTGAGGGAAGCTGGTCGCTCCCTTCTCCGGTCCGTACTGACCCTGCTGGGTTACCTGCTCATCTATGTTGTTGGTGGGTTGTTACTGAGGAGGAAGATGACGAAATGGCAGGCGCTGGCCTACGTATGCAGGCGGTGGATGAAGAACAACAAAAAGCAACCTGGAGTTGCTCCGGCGAGACCTCAGTCGTCGACGGCGAGACCTCTGGCGGGACCCGCTGGGGGACCCGCGTCGGAAAATGCCACTGGCCCAGTTGAGTCGGCGCCTCCGTCGGGGAGTTTCTTCGTGCGGACCGGGTCAACCGAGTGCGGTTGCGGCACTGTCACCACCGAGGAAGAACTCCGGGGGTCGTTGCTAGCTTTGATAAATGGGCAATTTCTGAATGAAGATATATGTGGAGTAGTGCTTAGTGTCGGTGATGTGCAGGACAAAATTTCCCTGTGGATCAATGCAGAAAATGAGGATGCTAAGGAGGATGCAAAGTTTGAAGAGAAGTGCCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

224

Amino Acids

24.61

Weight (kDa)

8.59

Isoelectric Point (pI)

65.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020565)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0281831
rosa_multiflora	Rmu_sc0003577.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063970
rosa_samantha	Rh5AG096900 Rh5BG093400 Rh5DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	1 cut(s)	398
AciI	CCGC	7 cut(s)	301, 377, 384, 396, 457, 477, 483
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	431
AfaI	GTAC	2 cut(s)	140, 204
AfiI	CCNNNNNNNGG	4 cut(s)	195, 377, 389, 440
AgsI	TTSAA	2 cut(s)	106, 656
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	3 cut(s)	151, 179, 527
AluI	AGCT	3 cut(s)	151, 179, 527
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	340, 361
AlwI	GGATC	1 cut(s)	620
AlwNI	CAGNNNCTG	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	2 cut(s)	285, 415
ApoI	RAATTY	1 cut(s)	600
AspLEI	GCGC	2 cut(s)	283, 433
AspS9I	GGNCC	5 cut(s)	198, 380, 392, 416, 459
AsuC2I	CCSGG	2 cut(s)	463, 512
AsuHPI	GGTGA	2 cut(s)	484, 596
AsuNHI	GCTAGC	1 cut(s)	523
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	4 cut(s)	198, 380, 392, 459
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	463, 512
BcoDI	GTCTC	2 cut(s)	340, 361
BfaI	CTAG	2 cut(s)	56, 524
BfmI	CTRYAG	1 cut(s)	154
BfoI	RGCGCY	2 cut(s)	284, 434
BfuAI	ACCTGC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	484
BlsI	GCNGC	1 cut(s)	485
Bme1390I	CCNGG	3 cut(s)	330, 463, 512
Bme18I	GGWCC	4 cut(s)	198, 380, 392, 459
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	5 cut(s)	198, 380, 392, 416, 459
BmiI	GGNNCC	5 cut(s)	381, 382, 393, 394, 432
BmrFI	CCNGG	3 cut(s)	330, 463, 512
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	3 cut(s)	150, 622, 634
BmtI	GCTAGC	1 cut(s)	527
BmuI	ACTGGG	1 cut(s)	413
BoxI	GACNNNNGTC	2 cut(s)	352, 397
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	636
BpuMI	CCSGG	2 cut(s)	463, 512
BsaAI	YACGTR	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	431
BsaI	GGTCTC	2 cut(s)	340, 361
BsaJI	CCNNGG	2 cut(s)	498, 511
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 377, 389, 440
Bse1I	ACTGG	3 cut(s)	116, 418, 419
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	498, 511
BseGI	GGATG	4 cut(s)	165, 312, 637, 649
BseLI	CCNNNNNNNGG	4 cut(s)	195, 377, 389, 440
BseMII	CTCAG	3 cut(s)	15, 245, 365
BseNI	ACTGG	3 cut(s)	116, 418, 419
BseRI	GAGGAG	1 cut(s)	271
BseYI	CCCAGC	2 cut(s)	214, 386
BsgI	GTGCAG	1 cut(s)	611
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	287, 417
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	4 cut(s)	196, 341, 462, 511
BslFI	GGGAC	2 cut(s)	393, 405
BslI	CCNNNNNNNGG	4 cut(s)	195, 377, 389, 440
BsmAI	GTCTC	2 cut(s)	340, 361
BsmFI	GGGAC	2 cut(s)	393, 405
BsnI	GGCC	2 cut(s)	287, 417
Bso31I	GGTCTC	2 cut(s)	340, 361
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	78, 612
BspACI	CCGC	7 cut(s)	301, 377, 384, 396, 457, 477, 483
BspANI	GGCC	2 cut(s)	287, 417
BspCNI	CTCAG	3 cut(s)	16, 246, 364
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	5 cut(s)	381, 382, 393, 394, 432
BspMI	ACCTGC	1 cut(s)	231
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	430
BspTNI	GGTCTC	2 cut(s)	340, 361
BsrI	ACTGG	3 cut(s)	116, 418, 419
BssECI	CCNNGG	2 cut(s)	498, 511
BssMI	GATC	2 cut(s)	78, 612
BssNI	GRCGYC	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	651
BstACI	GRCGYC	1 cut(s)	431
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	4 cut(s)	279, 285, 299, 525
BstDEI	CTNAG	5 cut(s)	24, 254, 351, 575, 636
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	4 cut(s)	165, 312, 637, 649
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	2 cut(s)	284, 434
BstHHI	GCGC	2 cut(s)	283, 433
BstKTI	GATC	2 cut(s)	81, 615
BstMAI	GTCTC	2 cut(s)	340, 361
BstMBI	GATC	2 cut(s)	78, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 483
BstNI	CCWGG	1 cut(s)	330
BstPAI	GACNNNNGTC	2 cut(s)	352, 397
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	328, 461, 510
BstSFI	CTRYAG	1 cut(s)	154
BstSNI	TACGTA	1 cut(s)	292
BstUI	CGCG	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	287, 417
BtsCI	GGATG	4 cut(s)	165, 312, 637, 649
BtsIMutI	CAGTG	3 cut(s)	123, 411, 486
BveI	ACCTGC	1 cut(s)	231
Cac8I	GCNNGC	4 cut(s)	279, 285, 299, 525
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	2 cut(s)	283, 433
Cfr13I	GGNCC	5 cut(s)	198, 380, 392, 416, 459
CpoI	CGGWCCG	2 cut(s)	198, 459
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	139, 203
CspI	CGGWCCG	2 cut(s)	198, 459
CviJI	RGCY	8 cut(s)	23, 96, 128, 151, 179, 287, 417, 527
CviKI_1	RGCY	8 cut(s)	23, 96, 128, 151, 179, 287, 417, 527
CviQI	GTAC	2 cut(s)	139, 203
DdeI	CTNAG	5 cut(s)	24, 254, 351, 575, 636
DinI	GGCGCC	1 cut(s)	432
DpnI	GATC	2 cut(s)	80, 614
DpnII	GATC	2 cut(s)	78, 612
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	151
Eco105I	TACGTA	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	2 cut(s)	340, 361
Eco47I	GGWCC	4 cut(s)	198, 380, 392, 459
Eco53kI	GAGCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	10
Eco91I	GGTNACC	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	2 cut(s)	380, 392
EcoO65I	GGTNACC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	432
EheI	GGCGCC	1 cut(s)	432
FaiI	YATR	5 cut(s)	156, 234, 295, 560, 562
FaqI	GGGAC	2 cut(s)	393, 405
FauI	CCCGC	3 cut(s)	370, 391, 403
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	1 cut(s)	484
FokI	GGATG	4 cut(s)	172, 319, 644, 656
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	484
FspBI	CTAG	2 cut(s)	56, 524
GlaI	GCGC	2 cut(s)	282, 432
GluI	GCNGC	1 cut(s)	484
GsaI	CCCAGC	2 cut(s)	218, 390
GsuI	CTGGAG	1 cut(s)	351
HaeII	RGCGCY	2 cut(s)	284, 434
HaeIII	GGCC	2 cut(s)	287, 417
HapII	CCGG	4 cut(s)	196, 341, 462, 511
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	2 cut(s)	283, 433
Hin1I	GRCGYC	1 cut(s)	431
Hin6I	GCGC	2 cut(s)	281, 431
HinP1I	GCGC	2 cut(s)	281, 431
HincII	GTYRAC	2 cut(s)	360, 468
HindII	GTYRAC	2 cut(s)	360, 468
HinfI	GANTC	2 cut(s)	121, 425
HpaII	CCGG	4 cut(s)	196, 341, 462, 511
HphI	GGTGA	2 cut(s)	484, 596
Hpy166II	GTNNAC	2 cut(s)	360, 468
Hpy188I	TCNGA	4 cut(s)	83, 146, 403, 549
Hpy188III	TCNNGA	2 cut(s)	10, 12
Hpy8I	GTNNAC	2 cut(s)	360, 468
Hpy99I	CGWCG	5 cut(s)	169, 361, 364, 403, 442
HpyAV	CCTTC	2 cut(s)	112, 200
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	2 cut(s)	167, 291
HpyCH4V	TGCA	4 cut(s)	297, 592, 620, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 483
HpyF3I	CTNAG	5 cut(s)	24, 254, 351, 575, 636
HpySE526I	ACGT	2 cut(s)	167, 291
Hsp92I	GRCGYC	1 cut(s)	431
HspAI	GCGC	2 cut(s)	281, 431
KasI	GGCGCC	1 cut(s)	430
KflI	GGGWCCC	2 cut(s)	380, 392
Kzo9I	GATC	2 cut(s)	78, 612
LmnI	GCTCC	2 cut(s)	191, 343
LweI	GCATC	3 cut(s)	150, 622, 634
MaeI	CTAG	2 cut(s)	56, 524
MaeII	ACGT	2 cut(s)	167, 291
MaeIII	GTNAC	3 cut(s)	218, 249, 490
MalI	GATC	2 cut(s)	80, 614
MboI	GATC	2 cut(s)	78, 612
MboII	GAAGA	6 cut(s)	274, 322, 442, 515, 566, 668
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	3 cut(s)	46, 542, 600
Mly113I	GGCGCC	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	4 cut(s)	196, 341, 462, 511
MspR9I	CCNGG	3 cut(s)	330, 463, 512
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	383, 483
NarI	GGCGCC	1 cut(s)	431
NciI	CCSGG	2 cut(s)	463, 512
NdeII	GATC	2 cut(s)	78, 612
NheI	GCTAGC	1 cut(s)	523
NlaIV	GGNNCC	5 cut(s)	381, 382, 393, 394, 432
NmuCI	GTSAC	1 cut(s)	490
PaeR7I	CTCGAG	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	2 cut(s)	362, 434
PfeI	GAWTC	1 cut(s)	121
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	485
PleI	GAGTC	1 cut(s)	433
PluTI	GGCGCC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	433
Ppu21I	YACGTR	1 cut(s)	292
PpuMI	RGGWCCY	2 cut(s)	380, 392
PshAI	GACNNNNGTC	2 cut(s)	352, 397
Psp124BI	GAGCTC	1 cut(s)	153
Psp5II	RGGWCCY	2 cut(s)	380, 392
Psp6I	CCWGG	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	218
PspFI	CCCAGC	2 cut(s)	214, 386
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	5 cut(s)	381, 382, 393, 394, 432
PspPI	GGNCC	5 cut(s)	198, 380, 392, 416, 459
PspPPI	RGGWCCY	2 cut(s)	380, 392
PstNI	CAGNNNCTG	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	463
RsaI	GTAC	2 cut(s)	140, 204
RsaNI	GTAC	2 cut(s)	139, 203
Rsr2I	CGGWCCG	2 cut(s)	198, 459
RsrII	CGGWCCG	2 cut(s)	198, 459
SacI	GAGCTC	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	358
SatI	GCNGC	1 cut(s)	484
Sau3AI	GATC	2 cut(s)	78, 612
Sau96I	GGNCC	5 cut(s)	198, 380, 392, 416, 459
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	3 cut(s)	330, 463, 512
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	3 cut(s)	150, 622, 634
SfcI	CTRYAG	1 cut(s)	154
SfoI	GGCGCC	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	10
SgrDI	CGTCGACG	1 cut(s)	358
SinI	GGWCC	4 cut(s)	198, 380, 392, 459
SlaI	CTCGAG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SnaBI	TACGTA	1 cut(s)	292
Sse9I	AATT	3 cut(s)	46, 542, 600
SsiI	CCGC	7 cut(s)	301, 377, 384, 396, 457, 477, 483
SspDI	GGCGCC	1 cut(s)	430
SspMI	CTAG	2 cut(s)	56, 524
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	328, 461, 510
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	2 cut(s)	170, 294
TaqI	TCGA	2 cut(s)	11, 359
TasI	AATT	3 cut(s)	46, 542, 600
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	1 cut(s)	121
TscAI	CASTG	3 cut(s)	123, 418, 493
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	323, 567
TspGWI	ACGGA	2 cut(s)	190, 426
TspRI	CASTG	3 cut(s)	123, 418, 493
Tth111I	GACNNNGTC	1 cut(s)	463
VpaK11BI	GGWCC	4 cut(s)	198, 380, 392, 459
XapI	RAATTY	1 cut(s)	600
XhoI	CTCGAG	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	2 cut(s)	56, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.