Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003577.1

Orthogroup ID

OG0020565

Physical Location & Seq

Genomic Coordinates Reverse (-)

35640 .. 37790

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003577.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgccattctcgagagtaaacactgagattttgagttttgtgagaaaatatcctctagttcttgtggtggcaaagttgatcggagatgaggtgggcttccccttcaactctttaccagtgcttccggccctatttctgtacttccgagagctatataggatgccgacgttgaggaaagctggtcgctcgcttctccggtccgtactgaccctgctgggttacctgctcatctatgttgttggtgggttgttactgaggaggaagatgacgaaatggcaggcgctggcctacgtatgcaggcggtggatgaagaacaacaaaaagcaacctgcatttgctccggcgtcgacggtgagacctctggcgggacccgcgtcggaaaatgccactggcccagttgagtcggcgacggcgcctccgtcgtggagtttcttcgtgcggaccgggtcaaccgagtgcggttgcggcactgtaaccaccgaggaacaactccggggtatttacgataccacacaacttgtgagaaagatcgctggacacttggagatatactgcttgaaatccagcattgggtcagcttgggaggatcctgttgaaggaagaaaatggacactaagcttttctaaagggaaagctgatgactcttggctacaaactctgctagctttgataaatgggcaatttctgaatgaagatatatgtggagtagtgcttagtgtcggtgatgtgcaggacaaagtttccctgtggatcgatgcagaaaatgaggatgctaaggtgagcattggaaaacagtggaagggcattttggatagcaacgaaactctagggttcatatttgatgaggatgcaaagcttgaagagaagtgccaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

292

Amino Acids

32.59

Weight (kDa)

8.44

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020565)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0281831
rosa_multiflora	Rmu_sc0003577.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063970
rosa_samantha	Rh5AG096900 Rh5BG093400 Rh5DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	231, 337
AccB1I	GGYRCC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	347
AccII	CGCG	1 cut(s)	374
AciI	CCGC	6 cut(s)	301, 365, 372, 439, 459, 465
AclWI	GGATC	3 cut(s)	581, 594, 758
AcyI	GRCGYC	2 cut(s)	344, 413
AfaI	GTAC	2 cut(s)	140, 204
AfiI	CCNNNNNNNGG	3 cut(s)	365, 570, 596
AgsI	TTSAA	4 cut(s)	106, 559, 596, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AluBI	AGCT	7 cut(s)	151, 179, 578, 618, 635, 665, 856
AluI	AGCT	7 cut(s)	151, 179, 578, 618, 635, 665, 856
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	3 cut(s)	581, 594, 758
AlwNI	CAGNNNCTG	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	3 cut(s)	126, 285, 391
AspLEI	GCGC	2 cut(s)	283, 415
AspS9I	GGNCC	5 cut(s)	127, 198, 368, 392, 441
AsuC2I	CCSGG	2 cut(s)	445, 494
AsuHPI	GGTGA	3 cut(s)	364, 734, 790
AsuNHI	GCTAGC	1 cut(s)	661
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	3 cut(s)	198, 368, 441
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	426
BcnI	CCSGG	2 cut(s)	445, 494
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	3 cut(s)	56, 662, 827
BfoI	RGCGCY	2 cut(s)	284, 416
BfuAI	ACCTGC	2 cut(s)	231, 337
BisI	GCNGC	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	467
Bme1390I	CCNGG	2 cut(s)	445, 494
Bme18I	GGWCC	3 cut(s)	198, 368, 441
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	5 cut(s)	127, 198, 368, 392, 441
BmiI	GGNNCC	4 cut(s)	369, 370, 414, 588
BmrFI	CCNGG	2 cut(s)	445, 494
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	4 cut(s)	150, 745, 760, 838
BmtI	GCTAGC	1 cut(s)	665
BmuI	ACTGGG	1 cut(s)	389
BoxI	GACNNNNGTC	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	774
BpuMI	CCSGG	2 cut(s)	445, 494
Bsa29I	ATCGAT	1 cut(s)	753
BsaAI	YACGTR	1 cut(s)	292
BsaHI	GRCGYC	2 cut(s)	344, 413
BsaI	GGTCTC	1 cut(s)	349
BsaJI	CCNNGG	2 cut(s)	480, 493
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 400, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 570, 596
Bse1I	ACTGG	3 cut(s)	116, 394, 395
BseCI	ATCGAT	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	480, 493
BseGI	GGATG	4 cut(s)	165, 312, 775, 853
BseLI	CCNNNNNNNGG	3 cut(s)	365, 570, 596
BseMII	CTCAG	2 cut(s)	15, 245
BseNI	ACTGG	3 cut(s)	116, 394, 395
BseRI	GAGGAG	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	749
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	3 cut(s)	128, 287, 393
BshNI	GGYRCC	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	5 cut(s)	125, 196, 341, 444, 493
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	3 cut(s)	365, 570, 596
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	3 cut(s)	128, 287, 393
Bso31I	GGTCTC	1 cut(s)	349
BsoBI	CYCGRG	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	78, 528, 586, 750
BspACI	CCGC	6 cut(s)	301, 365, 372, 439, 459, 465
BspANI	GGCC	3 cut(s)	128, 287, 393
BspCNI	CTCAG	2 cut(s)	16, 246
BspDI	ATCGAT	1 cut(s)	753
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	4 cut(s)	369, 370, 414, 588
BspMI	ACCTGC	2 cut(s)	231, 337
BspOI	GCTAGC	1 cut(s)	665
BspPI	GGATC	3 cut(s)	581, 594, 758
BspT107I	GGYRCC	1 cut(s)	412
BspTNI	GGTCTC	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	116, 394, 395
BssECI	CCNNGG	2 cut(s)	480, 493
BssMI	GATC	4 cut(s)	78, 528, 586, 750
BssNI	GRCGYC	2 cut(s)	344, 413
Bst4CI	ACNGT	3 cut(s)	352, 472, 795
Bst6I	CTCTTC	1 cut(s)	855
BstACI	GRCGYC	2 cut(s)	344, 413
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	5 cut(s)	188, 279, 285, 299, 663
BstDEI	CTNAG	5 cut(s)	24, 254, 614, 713, 774
BstEII	GGTNACC	1 cut(s)	218
BstENI	CCTNNNNNAGG	1 cut(s)	594
BstF5I	GGATG	4 cut(s)	165, 312, 775, 853
BstFNI	CGCG	1 cut(s)	374
BstH2I	RGCGCY	2 cut(s)	284, 416
BstHHI	GCGC	2 cut(s)	283, 415
BstKTI	GATC	4 cut(s)	81, 531, 589, 753
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	4 cut(s)	78, 528, 586, 750
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 465
BstPAI	GACNNNNGTC	1 cut(s)	373
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	443, 492
BstSNI	TACGTA	1 cut(s)	292
BstUI	CGCG	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
Bsu15I	ATCGAT	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	128, 287, 393
BsuTUI	ATCGAT	1 cut(s)	753
BtsCI	GGATG	4 cut(s)	165, 312, 775, 853
BtsIMutI	CAGTG	5 cut(s)	21, 123, 387, 468, 800
BveI	ACCTGC	2 cut(s)	231, 337
Cac8I	GCNNGC	5 cut(s)	188, 279, 285, 299, 663
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	2 cut(s)	283, 415
Cfr13I	GGNCC	5 cut(s)	127, 198, 368, 392, 441
ClaI	ATCGAT	1 cut(s)	753
CpoI	CGGWCCG	2 cut(s)	198, 441
CseI	GACGC	2 cut(s)	333, 363
Csp6I	GTAC	2 cut(s)	139, 203
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CspI	CGGWCCG	2 cut(s)	198, 441
CviQI	GTAC	2 cut(s)	139, 203
DdeI	CTNAG	5 cut(s)	24, 254, 614, 713, 774
DinI	GGCGCC	1 cut(s)	414
DpnI	GATC	4 cut(s)	80, 530, 588, 752
DpnII	GATC	4 cut(s)	78, 528, 586, 750
Eam1104I	CTCTTC	1 cut(s)	855
EarI	CTCTTC	1 cut(s)	855
Eco105I	TACGTA	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	349
Eco47I	GGWCC	3 cut(s)	198, 368, 441
Eco88I	CYCGRG	1 cut(s)	10
Eco91I	GGTNACC	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	368
EcoO65I	GGTNACC	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	414
EheI	GGCGCC	1 cut(s)	414
FaiI	YATR	8 cut(s)	154, 156, 234, 295, 550, 698, 700, 836
FaqI	GGGAC	1 cut(s)	381
FauI	CCCGC	2 cut(s)	358, 379
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	4 cut(s)	172, 319, 782, 860
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	3 cut(s)	56, 662, 827
GlaI	GCGC	2 cut(s)	282, 414
GluI	GCNGC	1 cut(s)	466
GsaI	CCCAGC	1 cut(s)	218
HaeII	RGCGCY	2 cut(s)	284, 416
HaeIII	GGCC	3 cut(s)	128, 287, 393
HapII	CCGG	5 cut(s)	125, 196, 341, 444, 493
HgaI	GACGC	2 cut(s)	333, 363
HhaI	GCGC	2 cut(s)	283, 415
Hin1I	GRCGYC	2 cut(s)	344, 413
Hin6I	GCGC	2 cut(s)	281, 413
HinP1I	GCGC	2 cut(s)	281, 413
HincII	GTYRAC	2 cut(s)	348, 450
HindII	GTYRAC	2 cut(s)	348, 450
HindIII	AAGCTT	2 cut(s)	616, 854
HinfI	GANTC	2 cut(s)	401, 641
HpaII	CCGG	5 cut(s)	125, 196, 341, 444, 493
HphI	GGTGA	3 cut(s)	364, 734, 790
Hpy166II	GTNNAC	3 cut(s)	19, 348, 450
Hpy188I	TCNGA	4 cut(s)	83, 146, 379, 687
Hpy188III	TCNNGA	2 cut(s)	10, 12
Hpy8I	GTNNAC	3 cut(s)	19, 348, 450
Hpy99I	CGWCG	6 cut(s)	169, 349, 352, 379, 412, 424
HpyAV	CCTTC	3 cut(s)	112, 590, 793
HpyCH4III	ACNGT	3 cut(s)	352, 472, 795
HpyCH4IV	ACGT	2 cut(s)	167, 291
HpyCH4V	TGCA	5 cut(s)	297, 332, 730, 758, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 465
HpyF3I	CTNAG	5 cut(s)	24, 254, 614, 713, 774
HpySE526I	ACGT	2 cut(s)	167, 291
Hsp92I	GRCGYC	2 cut(s)	344, 413
HspAI	GCGC	2 cut(s)	281, 413
KasI	GGCGCC	1 cut(s)	412
KflI	GGGWCCC	1 cut(s)	368
Kzo9I	GATC	4 cut(s)	78, 528, 586, 750
LmnI	GCTCC	1 cut(s)	343
LweI	GCATC	4 cut(s)	150, 745, 760, 838
MaeI	CTAG	3 cut(s)	56, 662, 827
MaeII	ACGT	2 cut(s)	167, 291
MaeIII	GTNAC	3 cut(s)	218, 249, 472
MalI	GATC	4 cut(s)	80, 530, 588, 752
MboI	GATC	4 cut(s)	78, 528, 586, 750
MboII	GAAGA	6 cut(s)	274, 322, 424, 612, 704, 872
MflI	RGATCY	1 cut(s)	586
MluCI	AATT	1 cut(s)	680
Mly113I	GGCGCC	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	410, 635
MmeI	TCCRAC	1 cut(s)	357
MspI	CCGG	5 cut(s)	125, 196, 341, 444, 493
MspR9I	CCNGG	2 cut(s)	445, 494
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	371, 465
NarI	GGCGCC	1 cut(s)	413
NciI	CCSGG	2 cut(s)	445, 494
NdeII	GATC	4 cut(s)	78, 528, 586, 750
NheI	GCTAGC	1 cut(s)	661
NlaIV	GGNNCC	4 cut(s)	369, 370, 414, 588
PaeR7I	CTCGAG	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PflFI	GACNNNGTC	1 cut(s)	445
PkrI	GCNGC	1 cut(s)	467
PleI	GAGTC	2 cut(s)	409, 635
PluTI	GGCGCC	1 cut(s)	416
PpsI	GAGTC	2 cut(s)	409, 635
Ppu21I	YACGTR	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	368
PshAI	GACNNNNGTC	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	368
PspEI	GGTNACC	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	214
PspN4I	GGNNCC	4 cut(s)	369, 370, 414, 588
PspPI	GGNCC	5 cut(s)	127, 198, 368, 392, 441
PspPPI	RGGWCCY	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	586
PsyI	GACNNNGTC	1 cut(s)	445
RsaI	GTAC	2 cut(s)	140, 204
RsaNI	GTAC	2 cut(s)	139, 203
Rsr2I	CGGWCCG	2 cut(s)	198, 441
RsrII	CGGWCCG	2 cut(s)	198, 441
SalI	GTCGAC	1 cut(s)	346
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	4 cut(s)	78, 528, 586, 750
Sau96I	GGNCC	5 cut(s)	127, 198, 368, 392, 441
SchI	GAGTC	2 cut(s)	410, 635
ScrFI	CCNGG	2 cut(s)	445, 494
SfaNI	GCATC	4 cut(s)	150, 745, 760, 838
SfoI	GGCGCC	1 cut(s)	414
Sfr274I	CTCGAG	1 cut(s)	10
SgrDI	CGTCGACG	1 cut(s)	346
SinI	GGWCC	3 cut(s)	198, 368, 441
SlaI	CTCGAG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SnaBI	TACGTA	1 cut(s)	292
Sse9I	AATT	1 cut(s)	680
SsiI	CCGC	6 cut(s)	301, 365, 372, 439, 459, 465
SspDI	GGCGCC	1 cut(s)	412
SspMI	CTAG	3 cut(s)	56, 662, 827
StyD4I	CCNGG	2 cut(s)	443, 492
TaaI	ACNGT	3 cut(s)	352, 472, 795
TaiI	ACGT	2 cut(s)	170, 294
TaqI	TCGA	3 cut(s)	11, 347, 753
TasI	AATT	1 cut(s)	680
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	468
TscAI	CASTG	5 cut(s)	28, 123, 394, 475, 800
TspDTI	ATGAA	3 cut(s)	323, 705, 823
TspGWI	ACGGA	2 cut(s)	190, 408
TspRI	CASTG	5 cut(s)	28, 123, 394, 475, 800
Tth111I	GACNNNGTC	1 cut(s)	445
VpaK11BI	GGWCC	3 cut(s)	198, 368, 441
XagI	CCTNNNNNAGG	1 cut(s)	594
XhoI	CTCGAG	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	3 cut(s)	56, 662, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.