Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0020565

Physical Location & Seq

Genomic Coordinates Forward (+)

8448566 .. 8451096

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG092600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGATCGCTAAACATAGCGATCCGGATCGCGAACGCCCAGCGGTTGGGTTCGTTCGATCAGGAACGCGGGTCGCCGGCAGGTGCAGCGTTTCCGGTGACTCTGGTACTGACCTGCTGGGTTAATTACCTGCTGATCTATGTTGTTGGTGGGTTGTTACTGAGGAGGAAGATGACGAAATGGCAGGCGCTGGCCTACGTATGCAGGTGGTGGATGAAAAACAACAAAAAGCAACCTGGAGTTGCTCCAGCGAGACCTCAATCGTCGGCGCCTGGGACCGAGCCTCAGTCGTGGAGTTTCTTTGTCTGGACCGGGTCAACCAAGTGCGATTGCGGCACTGTCACCACCGAGGAAGAACTCCGAGGTATTTATGATACCACACAACTTGTGAGAAAGATAGCTCCACACTTGGAGATATACTGCTTGAAATCCAGCATTGGGTCAGCTTGGGAGGATCCTGTTCAAGGAAGAAAATGGACACTAAGCTTTTCTAAAGGGAAAGTTGATGAATCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005845 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0010494 GO:0031974 GO:0031981 GO:0032991 GO:0034059 GO:0034518 GO:0035770 GO:0036293 GO:0036464 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

172

Amino Acids

19.22

Weight (kDa)

9.42

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020565)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0281831
rosa_multiflora	Rmu_sc0003577.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063970
rosa_samantha	Rh5AG096900 Rh5BG093400 Rh5DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	71, 195
Acc36I	ACCTGC	4 cut(s)	71, 122, 138, 195
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccII	CGCG	2 cut(s)	32, 69
AccIII	TCCGGA	1 cut(s)	24
AciI	CCGC	3 cut(s)	43, 69, 333
AclWI	GGATC	5 cut(s)	13, 16, 35, 449, 462
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	3 cut(s)	46, 438, 464
AgsI	TTSAA	2 cut(s)	427, 464
AjnI	CCWGG	2 cut(s)	235, 271
AluBI	AGCT	3 cut(s)	401, 446, 486
AluI	AGCT	3 cut(s)	401, 446, 486
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	5 cut(s)	13, 16, 35, 449, 462
AlwNI	CAGNNNCTG	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	24
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	86
AspLEI	GCGC	2 cut(s)	190, 271
AspS9I	GGNCC	2 cut(s)	276, 309
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	109, 334
AvaII	GGWCC	2 cut(s)	276, 309
BamHI	GGATCC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	98
BciT130I	CCWGG	2 cut(s)	237, 273
BcnI	CCSGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	247
BfoI	RGCGCY	2 cut(s)	191, 272
BfuAI	ACCTGC	4 cut(s)	71, 122, 138, 195
BisI	GCNGC	2 cut(s)	87, 334
BlsI	GCNGC	2 cut(s)	88, 335
Bme1390I	CCNGG	3 cut(s)	237, 273, 313
Bme18I	GGWCC	2 cut(s)	276, 309
BmgT120I	GGNCC	2 cut(s)	276, 309
BmiI	GGNNCC	3 cut(s)	270, 277, 456
BmrFI	CCNGG	3 cut(s)	237, 273, 313
BpmI	CTGGAG	2 cut(s)	231, 258
BpuMI	CCSGG	1 cut(s)	313
BsaAI	YACGTR	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	3 cut(s)	272, 348, 361
BsaWI	WCCGGW	2 cut(s)	24, 94
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 438, 464
Bse118I	RCCGGY	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	26
BseAI	TCCGGA	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	237, 273
BseDI	CCNNGG	3 cut(s)	272, 348, 361
BseGI	GGATG	1 cut(s)	219
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	3 cut(s)	46, 438, 464
BseMII	CTCAG	2 cut(s)	152, 299
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	98
BseYI	CCCAGC	2 cut(s)	39, 117
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	2 cut(s)	32, 69
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	4 cut(s)	25, 77, 95, 312
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	3 cut(s)	46, 438, 464
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	247
Bsp13I	TCCGGA	1 cut(s)	24
Bsp143I	GATC	6 cut(s)	5, 21, 27, 58, 135, 454
Bsp68I	TCGCGA	1 cut(s)	32
BspACI	CCGC	3 cut(s)	43, 69, 333
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	153, 298
BspEI	TCCGGA	1 cut(s)	24
BspFNI	CGCG	2 cut(s)	32, 69
BspLI	GGNNCC	3 cut(s)	270, 277, 456
BspMI	ACCTGC	4 cut(s)	71, 122, 138, 195
BspPI	GGATC	5 cut(s)	13, 16, 35, 449, 462
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	272, 348, 361
BssMI	GATC	6 cut(s)	5, 21, 27, 58, 135, 454
BssNI	GRCGYC	1 cut(s)	269
Bst2UI	CCWGG	2 cut(s)	237, 273
Bst4CI	ACNGT	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	78, 186, 192
BstDEI	CTNAG	3 cut(s)	161, 285, 482
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	2 cut(s)	32, 69
BstH2I	RGCGCY	2 cut(s)	191, 272
BstHHI	GCGC	2 cut(s)	190, 271
BstKTI	GATC	6 cut(s)	8, 24, 30, 61, 138, 457
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	6 cut(s)	5, 21, 27, 58, 135, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 333
BstNI	CCWGG	2 cut(s)	237, 273
BstSCI	CCNGG	3 cut(s)	235, 271, 311
BstSNI	TACGTA	1 cut(s)	199
BstUI	CGCG	2 cut(s)	32, 69
BstV1I	GCAGC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	336
BtuMI	TCGCGA	1 cut(s)	32
BveI	ACCTGC	4 cut(s)	71, 122, 138, 195
Cac8I	GCNNGC	3 cut(s)	78, 186, 192
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	2 cut(s)	190, 271
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	276, 309
Csp6I	GTAC	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviJI	RGCY	5 cut(s)	194, 283, 401, 446, 486
CviKI_1	RGCY	5 cut(s)	194, 283, 401, 446, 486
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	3 cut(s)	161, 285, 482
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	6 cut(s)	7, 23, 29, 60, 137, 456
DpnII	GATC	6 cut(s)	5, 21, 27, 58, 135, 454
Eco105I	TACGTA	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	276, 309
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	235, 271
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
FaiI	YATR	5 cut(s)	17, 141, 202, 372, 418
FaqI	GGGAC	1 cut(s)	289
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	87, 334
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	2 cut(s)	87, 334
GlaI	GCGC	2 cut(s)	189, 270
GluI	GCNGC	2 cut(s)	87, 334
GsaI	CCCAGC	2 cut(s)	43, 121
GsuI	CTGGAG	2 cut(s)	231, 258
HaeII	RGCGCY	2 cut(s)	191, 272
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	4 cut(s)	25, 77, 95, 312
HhaI	GCGC	2 cut(s)	190, 271
Hin1I	GRCGYC	1 cut(s)	269
Hin6I	GCGC	2 cut(s)	188, 269
HinP1I	GCGC	2 cut(s)	188, 269
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	2 cut(s)	100, 509
HpaII	CCGG	4 cut(s)	25, 77, 95, 312
HphI	GGTGA	2 cut(s)	109, 334
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	1 cut(s)	362
Hpy188III	TCNNGA	4 cut(s)	25, 31, 62, 307
Hpy8I	GTNNAC	1 cut(s)	318
Hpy99I	CGWCG	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	86, 204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 333
HpyF3I	CTNAG	3 cut(s)	161, 285, 482
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	269
HspAI	GCGC	2 cut(s)	188, 269
KasI	GGCGCC	1 cut(s)	268
Kpn2I	TCCGGA	1 cut(s)	24
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	6 cut(s)	5, 21, 27, 58, 135, 454
LmnI	GCTCC	2 cut(s)	250, 406
Lsp1109I	GCAGC	1 cut(s)	98
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	3 cut(s)	97, 156, 340
MalI	GATC	6 cut(s)	7, 23, 29, 60, 137, 456
MboI	GATC	6 cut(s)	5, 21, 27, 58, 135, 454
MboII	GAAGA	3 cut(s)	181, 365, 480
MflI	RGATCY	1 cut(s)	454
MluCI	AATT	1 cut(s)	124
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	7 cut(s)	156, 159, 267, 294, 343, 356, 445
MroI	TCCGGA	1 cut(s)	24
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	4 cut(s)	25, 77, 95, 312
MspR9I	CCNGG	3 cut(s)	237, 273, 313
MvaI	CCWGG	2 cut(s)	237, 273
MvnI	CGCG	2 cut(s)	32, 69
MwoI	GCNNNNNNNGC	2 cut(s)	86, 333
NaeI	GCCGGC	1 cut(s)	78
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	313
NdeII	GATC	6 cut(s)	5, 21, 27, 58, 135, 454
NgoMIV	GCCGGC	1 cut(s)	76
NlaIV	GGNNCC	3 cut(s)	270, 277, 456
NmuCI	GTSAC	2 cut(s)	97, 340
NruI	TCGCGA	1 cut(s)	32
PaqCI	CACCTGC	2 cut(s)	71, 195
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	509
PflFI	GACNNNGTC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	88, 335
PleI	GAGTC	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	235, 271
PspFI	CCCAGC	2 cut(s)	39, 117
PspGI	CCWGG	2 cut(s)	235, 271
PspN4I	GGNNCC	3 cut(s)	270, 277, 456
PspPI	GGNCC	2 cut(s)	276, 309
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	454
PsyI	GACNNNGTC	1 cut(s)	313
RruI	TCGCGA	1 cut(s)	32
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	87, 334
Sau3AI	GATC	6 cut(s)	5, 21, 27, 58, 135, 454
Sau96I	GGNCC	2 cut(s)	276, 309
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	237, 273, 313
SfoI	GGCGCC	1 cut(s)	270
SinI	GGWCC	2 cut(s)	276, 309
SnaBI	TACGTA	1 cut(s)	199
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	3 cut(s)	43, 69, 333
SspDI	GGCGCC	1 cut(s)	268
StyD4I	CCNGG	3 cut(s)	235, 271, 311
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	57
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	1 cut(s)	124
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	2 cut(s)	97, 340
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	2 cut(s)	97, 340
TspDTI	ATGAA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	343
Tth111I	GACNNNGTC	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	276, 309
XagI	CCTNNNNNAGG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.