RchiOBHm_Chr6g0286131

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
49429887 .. 49442065
12179 bp
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UTR
Exon/CDS
Intron
PRQ25666

Sequence Viewer

Length: 180 bp
ATGTTACTAGCAATTTTTCTTTTCCTGATAGCGTTGTTGTGCTTCCATGGATACCACTTACAACAGTTGCTGTGGCTCTTAGGCTCATGGAGTTTGATATATGTGGCCATCGTAAACATGCTACAGAAGAAGCTGGAGACTCAGAAGAACAAGGAATCTGAGAATTTTATAAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.98

Weight (kDa)

8.93

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020823)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0286131
rosa_multiflora Rmu_sc0001824.1_g000011
rosa_roxburghii Rroxscaffold_2G00084570
rosa_samantha Rh6DG286600
rosa_wichuraiana Rw4G031800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 1 cut(s) 163
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 70
AoxI GGCC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 163
BalI TGGCCA 1 cut(s) 107
BccI CCATC 1 cut(s) 116
BciVI GTATCC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 122
BfuI GTATCC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 150, 155
BshFI GGCC 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 107
Bsp19I CCATGG 1 cut(s) 46
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 151, 154
BssECI CCNNGG 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 66
BstDEI CTNAG 3 cut(s) 79, 141, 159
BstDSI CCRYGG 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 122
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 70
CviAII CATG 3 cut(s) 47, 87, 118
CviJI RGCY 4 cut(s) 76, 84, 107, 133
CviKI_1 RGCY 4 cut(s) 76, 84, 107, 133
DdeI CTNAG 3 cut(s) 79, 141, 159
EaeI YGGCCR 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 3 cut(s) 50, 90, 121
FaiI YATR 7 cut(s) 48, 88, 100, 102, 119, 170, 178
FatI CATG 3 cut(s) 46, 86, 117
FspBI CTAG 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 107
Hin1II CATG 3 cut(s) 50, 90, 121
HinfI GANTC 2 cut(s) 139, 155
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 144, 160
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 66
HpyF3I CTNAG 3 cut(s) 79, 141, 159
Hsp92II CATG 3 cut(s) 50, 90, 121
LpnPI CCDG 2 cut(s) 38, 119
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 2 cut(s) 139, 157
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 2 cut(s) 12, 163
MluNI TGGCCA 1 cut(s) 107
MlyI GAGTC 1 cut(s) 133
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 107
NcoI CCATGG 1 cut(s) 46
NlaIII CATG 3 cut(s) 50, 90, 121
NspI RCATGY 1 cut(s) 121
PfeI GAWTC 1 cut(s) 155
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PsiI TTATAA 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 70
SchI GAGTC 1 cut(s) 133
SetI ASST 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 122
SgeI CNNG 7 cut(s) 20, 37, 59, 99, 130, 146, 163
Sse9I AATT 2 cut(s) 12, 163
SspMI CTAG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 66
TasI AATT 2 cut(s) 12, 163
TfiI GAWTC 1 cut(s) 155
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 121
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.