Rroxscaffold_2G00084570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0020823
Physical Location & Seq
Forward (+)
7111572 .. 7113270
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084570.1

Sequence Viewer

Length: 387 bp
ATGGAGGACGCAAGGAGCGAAACCCTAAGAGTAGGGACAATTCGGACATTCGGTCCATATGTCCGCCCTAAAGAGGAAGGAAATCGCCGAGAAAAGAGTGCACGGAACCGTGGAGGTCAACGAGTGAAGAGAGAGAGAGGCAAGCCTCCAACCATGGTGCACATATCATATGACAACGGGCTCGCTCCCCAGATCATCCTATTCGGTCATTTGGATTTGACTATGCTAGAGAGTTTACATCGAAAGACTTTTGATGGATATTGCAATGGGCTTGATGTTGGACATCACATTTCCATGTACACACCCAATTGGTCTCGCGAAAACGACTACGATGGTAGTCCGAACATTGGTAATGCGCACCAATCTTCTTACATCCGCTTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.6

Weight (kDa)

9.41

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020823)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0286131
rosa_multiflora Rmu_sc0001824.1_g000011
rosa_roxburghii Rroxscaffold_2G00084570
rosa_samantha Rh6DG286600
rosa_wichuraiana Rw4G031800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 357
AccII CGCG 1 cut(s) 318
AciI CCGC 2 cut(s) 64, 376
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 73, 347
AhdI GACNNNNNGTC 1 cut(s) 51
Alw21I GWGCWC 2 cut(s) 103, 162
Alw26I GTCTC 1 cut(s) 318
Alw44I GTGCAC 2 cut(s) 99, 158
ApaLI GTGCAC 2 cut(s) 99, 158
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 2 cut(s) 103, 162
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 103, 162
BccI CCATC 2 cut(s) 248, 326
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 53
BmeRI GACNNNNNGTC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 109, 153
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 347
Bse3DI GCAATG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 109, 153
BseGI GGATG 2 cut(s) 195, 372
BseLI CCNNNNNNNGG 2 cut(s) 73, 347
BseMI GCAATG 1 cut(s) 271
BseSI GKGCMC 2 cut(s) 103, 162
Bsh1236I CGCG 1 cut(s) 318
BsiHKAI GWGCWC 2 cut(s) 103, 162
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 73, 347
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 49
Bso31I GGTCTC 1 cut(s) 318
Bsp1286I GDGCHC 3 cut(s) 103, 162, 183
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 153
Bsp68I TCGCGA 1 cut(s) 318
BspACI CCGC 2 cut(s) 64, 376
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 109, 153
BssMI GATC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 122
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 143, 183
BstDEI CTNAG 1 cut(s) 26
BstDSI CCRYGG 2 cut(s) 109, 153
BstF5I GGATG 2 cut(s) 195, 372
BstFNI CGCG 1 cut(s) 318
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 1 cut(s) 192
BstSLI GKGCMC 2 cut(s) 103, 162
BstUI CGCG 1 cut(s) 318
BtgI CCRYGG 2 cut(s) 109, 153
BtsCI GGATG 2 cut(s) 195, 372
BtuMI TCGCGA 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 143, 183
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 298
CviAII CATG 2 cut(s) 154, 295
CviJI RGCY 3 cut(s) 145, 181, 271
CviKI_1 RGCY 3 cut(s) 145, 181, 271
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DriI GACNNNNNGTC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 122
Eam1105I GACNNNNNGTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 2 cut(s) 157, 298
FaiI YATR 8 cut(s) 58, 60, 155, 164, 169, 171, 224, 296
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 153, 294
FauNDI CATATG 2 cut(s) 58, 169
FokI GGATG 2 cut(s) 182, 359
FriOI GRGCYC 1 cut(s) 183
FspAI RTGCGCAY 1 cut(s) 357
FspBI CTAG 1 cut(s) 227
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 1 cut(s) 357
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 157, 298
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
Hpy166II GTNNAC 5 cut(s) 101, 119, 160, 236, 300
Hpy188I TCNGA 2 cut(s) 45, 342
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 5 cut(s) 101, 119, 160, 236, 300
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 101, 160, 264
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 2 cut(s) 157, 298
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 15, 190
LpnPI CCDG 1 cut(s) 203
MaeI CTAG 1 cut(s) 227
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 139, 357
MfeI CAATTG 1 cut(s) 307
MhlI GDGCHC 3 cut(s) 103, 162, 183
MluCI AATT 2 cut(s) 39, 307
MmeI TCCRAC 2 cut(s) 173, 259
MnlI CCTC 4 cut(s) 67, 107, 131, 156
MslI CAYNNNNRTG 1 cut(s) 293
MunI CAATTG 1 cut(s) 307
MvnI CGCG 1 cut(s) 318
NcoI CCATGG 1 cut(s) 153
NdeI CATATG 2 cut(s) 58, 169
NdeII GATC 1 cut(s) 192
NlaIII CATG 2 cut(s) 157, 298
NlaIV GGNNCC 1 cut(s) 107
NmeAIII GCCGAG 1 cut(s) 113
NruI TCGCGA 1 cut(s) 318
NsbI TGCGCA 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 107
PspPI GGNCC 1 cut(s) 53
RruI TCGCGA 1 cut(s) 318
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 293
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 53
SduI GDGCHC 3 cut(s) 103, 162, 183
SetI ASST 1 cut(s) 118
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 2 cut(s) 39, 307
SsiI CCGC 2 cut(s) 64, 376
SspMI CTAG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 241
TaqII GACCGA 2 cut(s) 41, 194
TasI AATT 2 cut(s) 39, 307
TatI WGTACW 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 118
VneI GTGCAC 2 cut(s) 99, 158
VpaK11BI GGWCC 1 cut(s) 53
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.