Rh6DG286600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0020823
Physical Location & Seq
Forward (+)
48171155 .. 48172130
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG286600.1

Sequence Viewer

Length: 216 bp
ATGAGGTTGGGCATGCCGCTTCTTTTTCCCCGAAGTAAGGTTACTTTGATGATCAGTATACTAGGACTTAACCGGAGCATGCGTGCAGTACTTGTTGACTGGCTTGCAGAGTTGCTGTGGCTCTTAGGCTCATGGAGTTTGATATATGTGGCCATCGTAAACATGCTACAGAAGAAGCTGGAGACTCAGAAGAACAAGGAATCTGAGAATTTTATA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.36

Weight (kDa)

9.99

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020823)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0286131
rosa_multiflora Rmu_sc0001824.1_g000011
rosa_roxburghii Rroxscaffold_2G00084570
rosa_samantha Rh6DG286600
rosa_wichuraiana Rw4G031800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 58
AciI CCGC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 1 cut(s) 208
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 176
AoxI GGCC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 208
BalI TGGCCA 1 cut(s) 152
BarI GAAGNNNNNNTAC 2 cut(s) 25, 57
BccI CCATC 1 cut(s) 161
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
BmcAI AGTACT 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 195, 200
BseNI ACTGG 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 196, 199
BsrI ACTGG 1 cut(s) 104
BssMI GATC 1 cut(s) 51
BssNAI GTATAC 1 cut(s) 59
Bst1107I GTATAC 1 cut(s) 59
BstC8I GCNNGC 4 cut(s) 14, 80, 84, 105
BstDEI CTNAG 3 cut(s) 124, 186, 204
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 51
BstNSI RCATGY 3 cut(s) 16, 82, 166
BstSFI CTRYAG 1 cut(s) 167
BstZ17I GTATAC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 152
Cac8I GCNNGC 4 cut(s) 14, 80, 84, 105
Csp6I GTAC 1 cut(s) 89
CviAII CATG 4 cut(s) 13, 79, 132, 163
CviJI RGCY 5 cut(s) 103, 121, 129, 152, 178
CviKI_1 RGCY 5 cut(s) 103, 121, 129, 152, 178
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 3 cut(s) 124, 186, 204
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 150
FaeI CATG 4 cut(s) 16, 82, 135, 166
FaiI YATR 8 cut(s) 14, 59, 80, 133, 145, 147, 164, 215
FatI CATG 4 cut(s) 12, 78, 131, 162
FbaI TGATCA 1 cut(s) 51
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 1 cut(s) 62
GluI GCNGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 73
Hin1II CATG 4 cut(s) 16, 82, 135, 166
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 2 cut(s) 184, 200
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 3 cut(s) 59, 97, 160
Hpy188I TCNGA 2 cut(s) 189, 205
Hpy8I GTNNAC 3 cut(s) 59, 97, 160
HpyCH4V TGCA 2 cut(s) 86, 107
HpyF3I CTNAG 3 cut(s) 124, 186, 204
Hsp92II CATG 4 cut(s) 16, 82, 135, 166
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 3 cut(s) 85, 86, 164
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 2 cut(s) 184, 202
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 1 cut(s) 208
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 178
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MseI TTAA 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 1 cut(s) 73
NdeII GATC 1 cut(s) 51
NlaIII CATG 4 cut(s) 16, 82, 135, 166
NspI RCATGY 3 cut(s) 16, 82, 166
PaeI GCATGC 2 cut(s) 16, 82
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 18
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 1 cut(s) 51
ScaI AGTACT 1 cut(s) 90
SchI GAGTC 1 cut(s) 178
SetI ASST 3 cut(s) 8, 42, 180
SfcI CTRYAG 1 cut(s) 167
SphI GCATGC 2 cut(s) 16, 82
Sse9I AATT 1 cut(s) 208
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 62
TasI AATT 1 cut(s) 208
TatI WGTACW 1 cut(s) 88
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
XapI RAATTY 1 cut(s) 208
XceI RCATGY 3 cut(s) 16, 82, 166
XmiI GTMKAC 1 cut(s) 58
XspI CTAG 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.