Rmu_sc0001824.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001824.1
OG0020823
Physical Location & Seq
Reverse (-)
28803 .. 31400
2598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001824.1_g000011.1.cds

Sequence Viewer

Length: 525 bp
atgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagccatcatcctaatgactcatcatacggatgatttgctctactacgagtgtatgaatgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctgacctagaaggcaccgcctccatccaccaccagcctggggctggcacagtccctatccatgacaccatggatagcgtccatcatggtgaggcgccccagcacatatcatatgacaacgggctcactccccagatcatcctattcagtcaattggatttgactatgctagagagtttacatcgaaagactttcgatggatattgcaatgagactaatgttggacatcacattcccatgtacacacccaaatggtcttgcggaaacaactacgacgatagtccggacattggtaatgtgcgccaatctccttatatccgcttggggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

174

Amino Acids

19.65

Weight (kDa)

5.1

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020823)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0286131
rosa_multiflora Rmu_sc0001824.1_g000011
rosa_roxburghii Rroxscaffold_2G00084570
rosa_samantha Rh6DG286600
rosa_wichuraiana Rw4G031800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 209, 289
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 3 cut(s) 213, 456, 514
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 3 cut(s) 235, 239, 485
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 2 cut(s) 20, 26
AluI AGCT 2 cut(s) 20, 26
Alw26I GTCTC 2 cut(s) 157, 401
Aor13HI TCCGGA 1 cut(s) 478
ApeKI GCWGC 1 cut(s) 44
AspLEI GCGC 2 cut(s) 292, 498
AsuHPI GGTGA 1 cut(s) 296
BanI GGYRCC 2 cut(s) 209, 289
BanII GRGCYC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 56
BccI CCATC 4 cut(s) 80, 227, 285, 386
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 157, 401
BfaI CTAG 2 cut(s) 203, 365
BfoI RGCGCY 1 cut(s) 293
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 211, 291
BmrFI CCNGG 1 cut(s) 234
BoxI GACNNNNGTC 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 6
BsaHI GRCGYC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 233, 264
BsaWI WCCGGW 1 cut(s) 478
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 239, 485
Bse3DI GCAATG 1 cut(s) 409
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 233, 264
BseGI GGATG 4 cut(s) 75, 103, 219, 333
BseLI CCNNNNNNNGG 3 cut(s) 235, 239, 485
BseMI GCAATG 1 cut(s) 409
BseXI GCAGC 1 cut(s) 56
BseYI CCCAGC 1 cut(s) 294
BshNI GGYRCC 2 cut(s) 209, 289
BsiSI CCGG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 3 cut(s) 235, 239, 485
BsmAI GTCTC 2 cut(s) 157, 401
BsmFI GGGAC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 321
Bsp13I TCCGGA 1 cut(s) 478
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 1 cut(s) 330
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 3 cut(s) 213, 456, 514
BspEI TCCGGA 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 211, 291
BspT107I GGYRCC 2 cut(s) 209, 289
BspTNI GGTCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 409
BsrGI TGTACA 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 233, 264
BssMI GATC 1 cut(s) 330
BssNI GRCGYC 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 10, 247
BstACI GRCGYC 1 cut(s) 290
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 18, 241
BstDEI CTNAG 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 75, 103, 219, 333
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 2 cut(s) 292, 498
BstKTI GATC 1 cut(s) 333
BstMAI GTCTC 2 cut(s) 157, 401
BstMBI GATC 1 cut(s) 330
BstMWI GCNNNNNNNGC 4 cut(s) 32, 41, 53, 62
BstNI CCWGG 1 cut(s) 234
BstPAI GACNNNNGTC 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 4 cut(s) 75, 103, 219, 333
Cac8I GCNNGC 2 cut(s) 18, 241
CfoI GCGC 2 cut(s) 292, 498
CseI GACGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 436
CviAII CATG 4 cut(s) 257, 265, 281, 433
CviJI RGCY 8 cut(s) 20, 26, 47, 71, 145, 232, 239, 319
CviKI_1 RGCY 8 cut(s) 20, 26, 47, 71, 145, 232, 239, 319
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 49
DinI GGCGCC 1 cut(s) 291
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 321
EgeI GGCGCC 1 cut(s) 291
EheI GGCGCC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 4 cut(s) 260, 268, 284, 436
FaqI GGGAC 1 cut(s) 233
FatI CATG 4 cut(s) 256, 264, 280, 432
FauNDI CATATG 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 4 cut(s) 62, 110, 206, 320
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 203, 365
GlaI GCGC 2 cut(s) 291, 497
GluI GCNGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 298
HaeII RGCGCY 1 cut(s) 293
HapII CCGG 1 cut(s) 479
HgaI GACGC 1 cut(s) 262
HhaI GCGC 2 cut(s) 292, 498
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 4 cut(s) 260, 268, 284, 436
Hin6I GCGC 2 cut(s) 290, 496
HinP1I GCGC 2 cut(s) 290, 496
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 2 cut(s) 85, 185
HpaII CCGG 1 cut(s) 479
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 374, 438
Hpy188III TCNNGA 2 cut(s) 197, 479
Hpy8I GTNNAC 2 cut(s) 374, 438
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 2 cut(s) 135, 200
HpyCH4III ACNGT 2 cut(s) 10, 247
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 41, 53, 62
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 4 cut(s) 260, 268, 284, 436
HspAI GCGC 2 cut(s) 290, 496
KasI GGCGCC 1 cut(s) 289
Kpn2I TCCGGA 1 cut(s) 478
Kzo9I GATC 1 cut(s) 330
LpnPI CCDG 9 cut(s) 151, 210, 219, 225, 242, 246, 308, 341, 492
Lsp1109I GCAGC 1 cut(s) 56
MaeI CTAG 2 cut(s) 203, 365
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 182
MalI GATC 1 cut(s) 332
MboI GATC 1 cut(s) 330
MboII GAAGA 3 cut(s) 140, 143, 173
MfeI CAATTG 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 347
Mly113I GGCGCC 1 cut(s) 290
MlyI GAGTC 2 cut(s) 79, 179
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 3 cut(s) 46, 226, 280
MroI TCCGGA 1 cut(s) 478
MslI CAYNNNNRTG 5 cut(s) 80, 96, 282, 431, 445
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 4 cut(s) 32, 41, 53, 62
NarI GGCGCC 1 cut(s) 290
NcoI CCATGG 1 cut(s) 264
NdeI CATATG 1 cut(s) 307
NdeII GATC 1 cut(s) 330
NlaIII CATG 4 cut(s) 260, 268, 284, 436
NlaIV GGNNCC 2 cut(s) 211, 291
NmuCI GTSAC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 2 cut(s) 79, 179
PluTI GGCGCC 1 cut(s) 293
PpsI GAGTC 2 cut(s) 79, 179
PshAI GACNNNNGTC 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 211, 291
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 5 cut(s) 80, 96, 282, 431, 445
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 330
SchI GAGTC 2 cut(s) 79, 179
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 321
SetI ASST 4 cut(s) 22, 28, 180, 204
SfoI GGCGCC 1 cut(s) 291
SmiMI CAYNNNNRTG 5 cut(s) 80, 96, 282, 431, 445
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 1 cut(s) 347
SsiI CCGC 3 cut(s) 213, 456, 514
SspDI GGCGCC 1 cut(s) 289
SspMI CTAG 2 cut(s) 203, 365
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 2 cut(s) 10, 247
TaiI ACGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 159, 379, 390
TasI AATT 1 cut(s) 347
TatI WGTACW 1 cut(s) 435
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 137, 141
TspGWI ACGGA 2 cut(s) 110, 170
XcmI CCANNNNNNNNNTGG 2 cut(s) 230, 236
XspI CTAG 2 cut(s) 203, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.