Rw4G031800

HB1, ASXL, restriction endonuclease HTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0020823
Physical Location & Seq
Forward (+)
58985017 .. 58986315
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031800.1

Sequence Viewer

Length: 426 bp
ATGAATTACAGAAATTATTTTTGCACAACATGTACTAGTTTGAGCCATGTACAGTGTGCCTTAAGTAATTTACTTTTCTTTACATTTATATATATATATATGTATATATATATATGTATATATATTTTACAGGTTCTGGCATCGCTGGACGGTGCCATAAAGATAGAATATTTATCTTCAAACTTTGAGACTACCGGTGAGCTGCTATATTCCTCAAATGAAAAAGGACGCTCATGGAGTTTGATATATGTGGCCATCGTAAACATGCTACAGAAGAAGTTGGAGACTCAGAAGAACAAGGAATCTGAGAATTTTATATGGGCAATAAAGACGCGCAAATCATATAGCCAAAATGATATTGACAAGGTGTGCATTGAAGCGGCTGATTATATACAGAGTTTGGTGCAAGACTTTTGGCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

141

Amino Acids

16.55

Weight (kDa)

5.78

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020823)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0286131
rosa_multiflora Rmu_sc0001824.1_g000011
rosa_roxburghii Rroxscaffold_2G00084570
rosa_samantha Rh6DG286600
rosa_wichuraiana Rw4G031800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccII CGCG 1 cut(s) 334
AciI CCGC 1 cut(s) 380
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 2 cut(s) 34, 51
AflII CTTAAG 1 cut(s) 61
AflIII ACRYGT 1 cut(s) 29
AgeI ACCGGT 1 cut(s) 194
AgsI TTSAA 2 cut(s) 180, 377
AhlI ACTAGT 1 cut(s) 35
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 2 cut(s) 182, 278
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 310
AsiGI ACCGGT 1 cut(s) 194
AspLEI GCGC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 209
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 182, 278
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 269
BfrI CTTAAG 1 cut(s) 61
BisI GCNGC 2 cut(s) 203, 381
BlsI GCNGC 2 cut(s) 204, 382
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 194
BseMII CTCAG 2 cut(s) 297, 302
BseXI GCAGC 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 334
BshFI GGCC 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 152
BshTI ACCGGT 1 cut(s) 194
BsiSI CCGG 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 182, 278
BsnI GGCC 1 cut(s) 254
Bsp1407I TGTACA 1 cut(s) 49
BspACI CCGC 1 cut(s) 380
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 2 cut(s) 298, 301
BspFNI CGCG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 194
BsrGI TGTACA 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 54, 152
BstAFI CTTAAG 1 cut(s) 61
BstAUI TGTACA 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 288, 306
BstFNI CGCG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 336
BstMAI GTCTC 2 cut(s) 182, 278
BstNSI RCATGY 2 cut(s) 33, 268
BstSFI CTRYAG 1 cut(s) 269
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 254
BtgZI GCGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 59
CaiI CAGNNNCTG 1 cut(s) 136
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 194
CseI GACGC 2 cut(s) 237, 340
Csp6I GTAC 2 cut(s) 33, 50
CspAI ACCGGT 1 cut(s) 194
CviAII CATG 5 cut(s) 30, 47, 234, 265, 423
CviJI RGCY 6 cut(s) 45, 202, 254, 348, 383, 418
CviKI_1 RGCY 6 cut(s) 45, 202, 254, 348, 383, 418
CviQI GTAC 2 cut(s) 33, 50
DdeI CTNAG 2 cut(s) 288, 306
EaeI YGGCCR 1 cut(s) 252
FaeI CATG 5 cut(s) 33, 50, 237, 268, 426
FatI CATG 5 cut(s) 29, 46, 233, 264, 422
Fnu4HI GCNGC 2 cut(s) 203, 381
Fsp4HI GCNGC 2 cut(s) 203, 381
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 335
GluI GCNGC 2 cut(s) 203, 381
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 195
HgaI GACGC 2 cut(s) 237, 340
HhaI GCGC 1 cut(s) 336
Hin1II CATG 5 cut(s) 33, 50, 237, 268, 426
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 2 cut(s) 286, 302
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 291, 307
Hpy8I GTNNAC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 54, 152
HpyCH4V TGCA 3 cut(s) 24, 372, 406
HpyF3I CTNAG 2 cut(s) 288, 306
Hsp92II CATG 5 cut(s) 33, 50, 237, 268, 426
HspAI GCGC 1 cut(s) 334
LpnPI CCDG 4 cut(s) 116, 122, 131, 208
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 149
MaeI CTAG 1 cut(s) 36
MboII GAAGA 3 cut(s) 168, 286, 304
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 4 cut(s) 4, 13, 67, 310
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 1 cut(s) 223
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 61
MspI CCGG 1 cut(s) 195
MvnI CGCG 1 cut(s) 334
NlaIII CATG 5 cut(s) 33, 50, 237, 268, 426
NlaIV GGNNCC 1 cut(s) 154
NspI RCATGY 2 cut(s) 33, 268
PciI ACATGT 1 cut(s) 29
PfeI GAWTC 1 cut(s) 302
PinAI ACCGGT 1 cut(s) 194
PkrI GCNGC 2 cut(s) 204, 382
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PscI ACATGT 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 136
RsaI GTAC 2 cut(s) 34, 51
RsaNI GTAC 2 cut(s) 33, 50
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 2 cut(s) 203, 381
SchI GAGTC 1 cut(s) 280
SetI ASST 3 cut(s) 135, 204, 369
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 4 cut(s) 4, 13, 67, 310
SsiI CCGC 1 cut(s) 380
SspI AATATT 1 cut(s) 170
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 54, 152
TasI AATT 4 cut(s) 4, 13, 67, 310
TatI WGTACW 2 cut(s) 32, 49
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 59
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 17, 234
TspRI CASTG 1 cut(s) 59
Vha464I CTTAAG 1 cut(s) 61
XapI RAATTY 1 cut(s) 310
XceI RCATGY 2 cut(s) 33, 268
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.