Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004504

Physical Location & Seq

Genomic Coordinates Forward (+)

63678774 .. 63684418

Gene Structure 5645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27348

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2403 bp

ATGGAGAAGAAGTTCCTTACGGTGGCGCCTTTCGAGTGCGCTTGGCGAAATGATTTGAAGTTCCGGGAAGCTGGGAGGGGCTGCGTGGCCTTTGAAGCGTTTGCTCACAATGATGTCACGCTGGTGTTCCGGGAGAACGTGGGAAGTCAGCACTATCATTACAAGAAAGATAATTGTCCTCACTATACTGTTATTTTGGGTAGTCATAGGAATAGGCGGTTGAAAATTGAGGTGGATGGGAAAACAGTGGTGGATGTGGAGGGTGTCGGTCTTTGTTCTTCTTCTGCATTTCAGAGCTATTGGATCAGCATCTGTGATGGTTTGATCAGTATTGGCAAGGGAAGATACCCTTTTCAGAATCTTGTCTTTCAGTGGCTAGATTCAAATCCCAATTGTAGTGTTCGTTATGTTGGCCTTAGTAGTTGGGATAAACATGTTGGGTATAGGAATGTCAGTGTATTACCTTTAACTCAAAACCATATATCCTTGTGGAAGAATTTGGATTGCAAGGAGTACATGCATGAGGAAGCTGGCGAAGAGGAGTTGCAGGATGAACGAACCGGTTATGAGAAATGGGGGCTTGAAAATTTTCTTGAGAGCTGGGAGCTATCTGATGTTCTTTTCGTTGTTGGTCCAGAAGAAAGGCATGTACCAGCTCACAAGCCTATTTTGGCAGCATCTGGGAATTTCCCTATATCATCAGAAGACCTTCTCCAGCTAAAGGGGATAACTTATCCCCTTCTCCATGCTCTACTTGAATATATTTACACAGGTCGAACCCAGATTTCAGAATCGCAGCTTAGTTCCTTGAGAGCTCTAGGTTTACAATTCGAAGTGATTTCATTAGTGAAGCAATGCGAGGAGTCCATGGAAAGATTCAAGCTAAATAAAAAGCTGTTTGACTCGGGCAAATGTGTAGAATTATCATACCCATGCAGTAGGCCACAGTGTTGGACAGCCTTCCCGTTTGGAGTTCCCATCGATGTCCTGAGGCTTAGGCAATTGCATGCAACTAACAAGTACAGTGATGTTAACATCTATATTGAAGGTCATGGCCTTATTGCCCAGTCTCATAAAATTATTCTCAGTTTATGGAGTCTACCATTTGCAAAGATGTTCACAAATGGAATGTGTGAAACAATTTCCTCAGAGGTTCTTTTGAGAGATATATCACCAGAAGCGTTTCAAGCTTTGCTTGAGTTCATGTATAGTGGGGAACTCAATTTAGAAGCTACCATGGATTCTGGTGCCTTGTTACTCCAACTTTTTCTGTTGGCTGATCAATTTGGAGTCACTCTTCTTCATCAGGAATGCTGCAAAATGCTTTTAGAATGCCTATCAGAGGACTCGGTCTGTCTGATGCTTCAAGTGATTTCATCAATTCCTTCATGTCAACTTATTGAAGAAACTTGTGAGACGAACTTTTCTATGCACTTTGACTATTGCACAACTGCAAGCATTGACTTCGTTTTGTTAGATGATGCAACCTTTAGAAATATCATTCAGCATCCAGATTTGACTGTAACATCTGAAGAGAAGGTTCTCAATGCAATCTTAATGTGGGGTGCAAAAGCAAAGGAAGTGTGTGGATGGGAGGTGGTGGATGAGATGATGACATATTCAACCGCAGAAGCTCTTTTTGGGGATAGGCTGCAGACAGTAAATGACCTTCTACCACTTGTTCGATTTTTGCTGCTGCCTTTGTCCTTGCTTGAGAAGTTACAGAAGAGCAACATTAGCAGGCATATGTCTATGTTTAATAACCTTGTCAAGGAGGCCATCAATTATATCGAGCATGGATTGACAAGACCGGAAAACGAGCACAACCTGAGAATCCAACATAGGCGATCTAGTTATAAGGAGCTCCAGTACATATGTGATGGGGACAGCAATGGAGTCCTGTACTTTGCAGGTACATCATATGGAGAACATCAGTGGGTTAATCCTGTTCTGGCGAAGAGAATTACAATTACAGCTAGCAGTCCCCCTTCTAGGTTCACTGATCCCAAGGTTTTGGTCTCAAGATCTTACCAGGGAACATCCTTCGCTGGGCCACAGATTGAAGATGGGCGGAATAACACCTGGTGGATGGTCGACATTGGTGCAGATCATCAGCTGATTTGCAACTACTACACCTTGAGACATGATGGCTCCAGAGCATACATGAGATATTGGAATTTCCAGGGATCTCTGGATGGGAAGACGTGGACAAATCTGAGAGTTCACGAGAATGACCAAACAATATGCAAGCCGGGGCAGTTCGCATCATGGCCGGTTACAGGACCAAATGCTCTACTTCCGTTCAGATTCTTTAGGGTTGTTCTGACTGGACCTACAATGGATGCTTCAAACCCTTGGAATTTCTGCATTTGCTTTTTAGAACTCTATGGCTACTTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BACK BTB F5_F8_type_C Methyltransf_FA

Protein Analysis

800

Amino Acids

91.42

Weight (kDa)

5.6

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_FA	PF12248	11 - 151	3.4e-30	Farnesoic acid 0-methyl transferase
BTB	PF00651	194 - 291	5.9e-13	BTB/POZ domain
BTB	PF00651	334 - 444	6.4e-18	BTB/POZ domain
BTB_KLHL33	PF21536	372 - 410	1.5e-06	Kelch-like protein 33-like, BTB/POZ domain
BACK	PF07707	452 - 527	2.2e-06	BTB And C-terminal Kelch
F5_F8_type_C	PF00754	657 - 746	4.5e-07	F5/8 type C domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30600 AT2G30600 AT2G30600 AT2G30600 AT2G30600 AT2G30600
fragaria_vesca	FvH4_2g37320 FvH4_2g37320 FvH4_2g37320 FvH4_2g37320 FvH4_2g37320 FvH4_2g37320
malus_domestica	MD08G1002100.v1.1
prunus_persica	Prupe.1G353800_v2.0.a1 Prupe.1G353800_v2.0.a1 Prupe.1G353800_v2.0.a1 Prupe.1G353800_v2.0.a1 Prupe.1G353800_v2.0.a1 Prupe.1G353800_v2.0.a1 Prupe.1G353800_v2.0.a1
pyrus_communis	pycom08g00140
rosa_chinensis	RchiOBHm_Chr6g0304381
rosa_laevigata	RLG00000010985
rosa_multiflora	Rmu_ssc0000218.1_g000043
rosa_roxburghii	Rroxscaffold_7G00163790
rosa_rugosa	Rorug06G0330900 Rorug06G0331000
rosa_samantha	Rh6AG443900 Rh6BG458500 Rh6CG456700 Rh6DG443400
rosa_wichuraiana	Rw6G038530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1857
Acc36I	ACCTGC	1 cut(s)	1901
AccB1I	GGYRCC	2 cut(s)	25, 1247
AccI	GTMKAC	2 cut(s)	1099, 2094
AciI	CCGC	3 cut(s)	217, 1626, 2071
AclWI	GGATC	3 cut(s)	311, 1997, 2194
AcoI	YGGCCR	1 cut(s)	2270
AcsI	RAATTY	5 cut(s)	496, 586, 685, 2176, 2359
AcuI	CTGAAG	1 cut(s)	1551
AcyI	GRCGYC	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	2085
AfaI	GTAC	6 cut(s)	515, 651, 1022, 1871, 1904, 1915
AfiI	CCNNNNNNNGG	7 cut(s)	22, 721, 1342, 1771, 1992, 2049, 2279
AflIII	ACRYGT	1 cut(s)	433
AgeI	ACCGGT	1 cut(s)	560
AjiI	CACGTC	1 cut(s)	2205
AjnI	CCWGG	3 cut(s)	2031, 2081, 2181
AjuI	GAANNNNNNNTTGG	2 cut(s)	1623, 1655
AleI	CACNNNNGTG	1 cut(s)	122
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw21I	GWGCWC	3 cut(s)	817, 1824, 1866
Alw26I	GTCTC	4 cut(s)	1074, 1409, 2023, 2134
AlwI	GGATC	3 cut(s)	311, 1997, 2194
AlwNI	CAGNNNCTG	2 cut(s)	312, 680
Ama87I	CYCGRG	1 cut(s)	904
AoxI	GGCC	7 cut(s)	87, 412, 941, 1054, 1776, 2051, 2270
ApeKI	GCWGC	7 cut(s)	81, 674, 796, 1314, 1651, 1693, 1696
ApoI	RAATTY	5 cut(s)	496, 586, 685, 2176, 2359
AsiGI	ACCGGT	1 cut(s)	560
Asp700I	GAANNNNTTC	4 cut(s)	11, 588, 708, 1182
AspLEI	GCGC	2 cut(s)	28, 41
AspS9I	GGNCC	4 cut(s)	632, 2051, 2282, 2330
AsuC2I	CCSGG	3 cut(s)	65, 131, 2253
AsuHPI	GGTGA	1 cut(s)	1164
AsuII	TTCGAA	1 cut(s)	831
AsuNHI	GCTAGC	1 cut(s)	1976
AvaI	CYCGRG	1 cut(s)	904
AvaII	GGWCC	3 cut(s)	632, 2282, 2330
AxyI	CCTNAGG	1 cut(s)	989
BanI	GGYRCC	2 cut(s)	25, 1247
BanII	GRGCYC	2 cut(s)	817, 1866
BarI	GAAGNNNNNNTAC	2 cut(s)	1653, 1685
BauI	CACGAG	1 cut(s)	2225
BbsI	GAAGAC	2 cut(s)	711, 2207
Bbv12I	GWGCWC	3 cut(s)	817, 1824, 1866
BbvI	GCAGC	7 cut(s)	68, 686, 808, 1301, 1638, 1680, 1683
BcgI	CGANNNNNNTGC	4 cut(s)	1447, 1481, 2084, 2118
BciT130I	CCWGG	3 cut(s)	2033, 2083, 2183
BclI	TGATCA	2 cut(s)	324, 1279
BcnI	CCSGG	3 cut(s)	65, 131, 2253
BcoDI	GTCTC	4 cut(s)	1074, 1409, 2023, 2134
BfaI	CTAG	5 cut(s)	377, 818, 1851, 1977, 1992
BfmI	CTRYAG	1 cut(s)	1652
BfoI	RGCGCY	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	1901
BglII	AGATCT	1 cut(s)	2024
BisI	GCNGC	7 cut(s)	82, 675, 797, 1315, 1652, 1694, 1697
BlsI	GCNGC	7 cut(s)	83, 676, 798, 1316, 1653, 1695, 1698
Bme1390I	CCNGG	6 cut(s)	65, 131, 2033, 2083, 2183, 2253
Bme18I	GGWCC	3 cut(s)	632, 2282, 2330
BmeT110I	CYCGRG	1 cut(s)	904
BmgBI	CACGTC	1 cut(s)	2205
BmgT120I	GGNCC	4 cut(s)	632, 2051, 2282, 2330
BmiI	GGNNCC	3 cut(s)	27, 1249, 2152
BmrFI	CCNGG	6 cut(s)	65, 131, 2033, 2083, 2183, 2253
BmrI	ACTGGG	1 cut(s)	1060
BmsI	GCATC	7 cut(s)	318, 686, 1350, 1471, 1516, 2273, 2332
BmtI	GCTAGC	1 cut(s)	1980
BmuI	ACTGGG	1 cut(s)	1060
BpiI	GAAGAC	2 cut(s)	711, 2207
BpmI	CTGGAG	3 cut(s)	698, 1850, 2137
Bpu10I	CCTNAGC	1 cut(s)	995
Bpu14I	TTCGAA	1 cut(s)	831
BpuEI	CTTGAG	6 cut(s)	614, 829, 1217, 1733, 2005, 2158
BpuMI	CCSGG	3 cut(s)	65, 131, 2253
Bsa29I	ATCGAT	1 cut(s)	981
BsaBI	GATNNNNATC	2 cut(s)	308, 384
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	2023
BsaJI	CCNNGG	7 cut(s)	867, 1236, 2007, 2032, 2182, 2252, 2354
BsaWI	WCCGGW	2 cut(s)	560, 1810
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 1853, 1883
Bsc4I	CCNNNNNNNGG	7 cut(s)	22, 721, 1342, 1771, 1992, 2049, 2279
Bse118I	RCCGGY	2 cut(s)	560, 2272
Bse1I	ACTGG	3 cut(s)	1066, 1867, 2332
Bse21I	CCTNAGG	1 cut(s)	989
Bse3DI	GCAATG	2 cut(s)	860, 1897
Bse8I	GATNNNNATC	2 cut(s)	308, 384
BseBI	CCWGG	3 cut(s)	2033, 2083, 2183
BseCI	ATCGAT	1 cut(s)	981
BseDI	CCNNGG	7 cut(s)	867, 1236, 2007, 2032, 2182, 2252, 2354
BseJI	GATNNNNATC	2 cut(s)	308, 384
BseLI	CCNNNNNNNGG	7 cut(s)	22, 721, 1342, 1771, 1992, 2049, 2279
BseMI	GCAATG	2 cut(s)	860, 1897
BseMII	CTCAG	5 cut(s)	980, 1099, 1161, 1820, 2207
BseNI	ACTGG	3 cut(s)	1066, 1867, 2332
BseRI	GAGGAG	2 cut(s)	554, 875
BseXI	GCAGC	7 cut(s)	68, 686, 808, 1301, 1638, 1680, 1683
BseYI	CCCAGC	3 cut(s)	71, 600, 2048
BsgI	GTGCAG	1 cut(s)	2124
BshFI	GGCC	7 cut(s)	89, 414, 943, 1056, 1778, 2053, 2272
BshNI	GGYRCC	2 cut(s)	25, 1247
BshTI	ACCGGT	1 cut(s)	560
BshVI	ATCGAT	1 cut(s)	981
BsiHKAI	GWGCWC	3 cut(s)	817, 1824, 1866
BsiHKCI	CYCGRG	1 cut(s)	904
BsiSI	CCGG	6 cut(s)	64, 130, 561, 1811, 2252, 2273
BslFI	GGGAC	2 cut(s)	1898, 1968
BslI	CCNNNNNNNGG	7 cut(s)	22, 721, 1342, 1771, 1992, 2049, 2279
BsmAI	GTCTC	4 cut(s)	1074, 1409, 2023, 2134
BsmBI	CGTCTC	1 cut(s)	1409
BsmFI	GGGAC	2 cut(s)	1898, 1968
BsmI	GAATGC	2 cut(s)	1316, 1337
BsnI	GGCC	7 cut(s)	89, 414, 943, 1056, 1778, 2053, 2272
Bso31I	GGTCTC	1 cut(s)	2023
BsoBI	CYCGRG	1 cut(s)	904
Bsp119I	TTCGAA	1 cut(s)	831
Bsp1286I	GDGCHC	3 cut(s)	817, 1824, 1866
Bsp143I	GATC	8 cut(s)	303, 324, 1279, 1847, 2002, 2024, 2107, 2186
Bsp19I	CCATGG	2 cut(s)	867, 1236
BspACI	CCGC	3 cut(s)	217, 1626, 2071
BspANI	GGCC	7 cut(s)	89, 414, 943, 1056, 1778, 2053, 2272
BspCNI	CTCAG	5 cut(s)	981, 1098, 1160, 1821, 2208
BspDI	ATCGAT	1 cut(s)	981
BspLI	GGNNCC	3 cut(s)	27, 1249, 2152
BspMAI	CTGCAG	1 cut(s)	1656
BspMI	ACCTGC	1 cut(s)	1901
BspOI	GCTAGC	1 cut(s)	1980
BspPI	GGATC	3 cut(s)	311, 1997, 2194
BspQI	GCTCTTC	1 cut(s)	1721
BspT104I	TTCGAA	1 cut(s)	831
BspT107I	GGYRCC	2 cut(s)	25, 1247
BspTNI	GGTCTC	1 cut(s)	2023
BsrDI	GCAATG	2 cut(s)	860, 1897
BsrFI	RCCGGY	2 cut(s)	560, 2272
BsrI	ACTGG	3 cut(s)	1066, 1867, 2332
BssAI	RCCGGY	2 cut(s)	560, 2272
BssECI	CCNNGG	7 cut(s)	867, 1236, 2007, 2032, 2182, 2252, 2354
BssMI	GATC	8 cut(s)	303, 324, 1279, 1847, 2002, 2024, 2107, 2186
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	2225
BssT1I	CCWWGG	4 cut(s)	867, 1236, 2007, 2354
Bst2BI	CACGAG	1 cut(s)	2225
Bst2UI	CCWGG	3 cut(s)	2033, 2083, 2183
Bst4CI	ACNGT	7 cut(s)	22, 190, 247, 948, 1025, 1522, 1660
Bst6I	CTCTTC	5 cut(s)	531, 1302, 1527, 1721, 1952
BstACI	GRCGYC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	831
BstC8I	GCNNGC	6 cut(s)	532, 1008, 1456, 1742, 1978, 2249
BstDEI	CTNAG	8 cut(s)	416, 800, 989, 995, 1085, 1147, 1829, 2216
BstDSI	CCRYGG	2 cut(s)	867, 1236
BstENI	CCTNNNNNAGG	2 cut(s)	1340, 1769
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	28, 41
BstKTI	GATC	8 cut(s)	306, 327, 1282, 1850, 2005, 2027, 2110, 2189
BstMAI	GTCTC	4 cut(s)	1074, 1409, 2023, 2134
BstMBI	GATC	8 cut(s)	303, 324, 1279, 1847, 2002, 2024, 2107, 2186
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 1187, 1737
BstNI	CCWGG	3 cut(s)	2033, 2083, 2183
BstNSI	RCATGY	4 cut(s)	437, 520, 650, 1010
BstSCI	CCNGG	6 cut(s)	63, 129, 2031, 2081, 2181, 2251
BstSFI	CTRYAG	1 cut(s)	1652
BstV1I	GCAGC	7 cut(s)	68, 686, 808, 1301, 1638, 1680, 1683
BstV2I	GAAGAC	2 cut(s)	711, 2207
BstX2I	RGATCY	2 cut(s)	2024, 2186
BstXI	CCANNNNNNTGG	2 cut(s)	951, 2014
BstYI	RGATCY	2 cut(s)	2024, 2186
Bsu15I	ATCGAT	1 cut(s)	981
Bsu36I	CCTNAGG	1 cut(s)	989
BsuRI	GGCC	7 cut(s)	89, 414, 943, 1056, 1778, 2053, 2272
BsuTUI	ATCGAT	1 cut(s)	981
BtgI	CCRYGG	2 cut(s)	867, 1236
BtrI	CACGTC	1 cut(s)	2205
BtsIMutI	CAGTG	7 cut(s)	252, 377, 460, 953, 1030, 1940, 1998
BveI	ACCTGC	1 cut(s)	1901
Cac8I	GCNNGC	6 cut(s)	532, 1008, 1456, 1742, 1978, 2249
CaiI	CAGNNNCTG	2 cut(s)	312, 680
CfoI	GCGC	2 cut(s)	28, 41
Cfr10I	RCCGGY	2 cut(s)	560, 2272
Cfr13I	GGNCC	4 cut(s)	632, 2051, 2282, 2330
ClaI	ATCGAT	1 cut(s)	981
CsiI	ACCWGGT	1 cut(s)	2081
Csp6I	GTAC	6 cut(s)	514, 650, 1021, 1870, 1903, 1914
CspAI	ACCGGT	1 cut(s)	560
CviQI	GTAC	6 cut(s)	514, 650, 1021, 1870, 1903, 1914
DdeI	CTNAG	8 cut(s)	416, 800, 989, 995, 1085, 1147, 1829, 2216
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	8 cut(s)	305, 326, 1281, 1849, 2004, 2026, 2109, 2188
DpnII	GATC	8 cut(s)	303, 324, 1279, 1847, 2002, 2024, 2107, 2186
DraIII	CACNNNGTG	1 cut(s)	2085
EaeI	YGGCCR	1 cut(s)	2270
Eam1104I	CTCTTC	5 cut(s)	531, 1302, 1527, 1721, 1952
EarI	CTCTTC	5 cut(s)	531, 1302, 1527, 1721, 1952
EciI	GGCGGA	1 cut(s)	2086
Ecl136II	GAGCTC	2 cut(s)	815, 1864
Eco130I	CCWWGG	4 cut(s)	867, 1236, 2007, 2354
Eco24I	GRGCYC	2 cut(s)	817, 1866
Eco31I	GGTCTC	1 cut(s)	2023
Eco47I	GGWCC	3 cut(s)	632, 2282, 2330
Eco53kI	GAGCTC	2 cut(s)	815, 1864
Eco57I	CTGAAG	1 cut(s)	1551
Eco81I	CCTNAGG	1 cut(s)	989
Eco88I	CYCGRG	1 cut(s)	904
EcoICRI	GAGCTC	2 cut(s)	815, 1864
EcoNI	CCTNNNNNAGG	2 cut(s)	1340, 1769
EcoRII	CCWGG	3 cut(s)	2031, 2081, 2181
EcoT14I	CCWWGG	4 cut(s)	867, 1236, 2007, 2354
EcoT22I	ATGCAT	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	817, 1866
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
ErhI	CCWWGG	4 cut(s)	867, 1236, 2007, 2354
Esp3I	CGTCTC	1 cut(s)	1409
FalI	AAGNNNNNCTT	4 cut(s)	334, 366, 1179, 1211
FaqI	GGGAC	2 cut(s)	1898, 1968
FauNDI	CATATG	3 cut(s)	1746, 1874, 1921
FbaI	TGATCA	2 cut(s)	324, 1279
FblI	GTMKAC	2 cut(s)	1099, 2094
Fnu4HI	GCNGC	7 cut(s)	82, 675, 797, 1315, 1652, 1694, 1697
FriOI	GRGCYC	2 cut(s)	817, 1866
Fsp4HI	GCNGC	7 cut(s)	82, 675, 797, 1315, 1652, 1694, 1697
FspBI	CTAG	5 cut(s)	377, 818, 1851, 1977, 1992
GlaI	GCGC	2 cut(s)	27, 40
GluI	GCNGC	7 cut(s)	82, 675, 797, 1315, 1652, 1694, 1697
GsaI	CCCAGC	3 cut(s)	75, 604, 2052
GsuI	CTGGAG	3 cut(s)	698, 1850, 2137
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	7 cut(s)	89, 414, 943, 1056, 1778, 2053, 2272
HapII	CCGG	6 cut(s)	64, 130, 561, 1811, 2252, 2273
HhaI	GCGC	2 cut(s)	28, 41
Hin1I	GRCGYC	1 cut(s)	26
Hin6I	GCGC	2 cut(s)	26, 39
HinP1I	GCGC	2 cut(s)	26, 39
HincII	GTYRAC	3 cut(s)	1033, 1394, 2095
HindII	GTYRAC	3 cut(s)	1033, 1394, 2095
HindIII	AAGCTT	1 cut(s)	1188
HpaI	GTTAAC	1 cut(s)	1033
HpaII	CCGG	6 cut(s)	64, 130, 561, 1811, 2252, 2273
HphI	GGTGA	1 cut(s)	1164
Hpy166II	GTNNAC	9 cut(s)	824, 1033, 1100, 1119, 1394, 1998, 2095, 2208, 2224
Hpy188III	TCNNGA	9 cut(s)	593, 635, 988, 1307, 1511, 2022, 2154, 2192, 2225
Hpy8I	GTNNAC	9 cut(s)	824, 1033, 1100, 1119, 1394, 1998, 2095, 2208, 2224
HpyAV	CCTTC	9 cut(s)	719, 749, 970, 1040, 1395, 1531, 1679, 1998, 2053
HpyCH4III	ACNGT	7 cut(s)	22, 190, 247, 948, 1025, 1522, 1660
HpyCH4IV	ACGT	2 cut(s)	138, 2204
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 1187, 1737
HpyF3I	CTNAG	8 cut(s)	416, 800, 989, 995, 1085, 1147, 1829, 2216
HpySE526I	ACGT	2 cut(s)	138, 2204
Hsp92I	GRCGYC	1 cut(s)	26
HspAI	GCGC	2 cut(s)	26, 39
KasI	GGCGCC	1 cut(s)	25
Ksp22I	TGATCA	2 cut(s)	324, 1279
KspAI	GTTAAC	1 cut(s)	1033
Kzo9I	GATC	8 cut(s)	303, 324, 1279, 1847, 2002, 2024, 2107, 2186
LguI	GCTCTTC	1 cut(s)	1721
LmnI	GCTCC	4 cut(s)	604, 1861, 1869, 2156
Lsp1109I	GCAGC	7 cut(s)	68, 686, 808, 1301, 1638, 1680, 1683
LweI	GCATC	7 cut(s)	318, 686, 1350, 1471, 1516, 2273, 2332
MabI	ACCWGGT	1 cut(s)	2081
MaeI	CTAG	5 cut(s)	377, 818, 1851, 1977, 1992
MaeII	ACGT	2 cut(s)	138, 2204
MaeIII	GTNAC	6 cut(s)	115, 1254, 1291, 1522, 1719, 2275
MalI	GATC	8 cut(s)	305, 326, 1281, 1849, 2004, 2026, 2109, 2188
MboI	GATC	8 cut(s)	303, 324, 1279, 1847, 2002, 2024, 2107, 2186
MfeI	CAATTG	2 cut(s)	391, 1001
MflI	RGATCY	2 cut(s)	2024, 2186
MhlI	GDGCHC	3 cut(s)	817, 1824, 1866
Mly113I	GGCGCC	1 cut(s)	26
MlyI	GAGTC	6 cut(s)	872, 896, 1105, 1299, 1340, 1905
MmeI	TCCRAC	3 cut(s)	932, 1285, 1861
Mph1103I	ATGCAT	1 cut(s)	522
MroXI	GAANNNNTTC	4 cut(s)	11, 588, 708, 1182
MseI	TTAA	5 cut(s)	467, 1032, 1556, 1758, 1941
MslI	CAYNNNNRTG	4 cut(s)	111, 122, 931, 2229
MspA1I	CMGCKG	1 cut(s)	2116
MspI	CCGG	6 cut(s)	64, 130, 561, 1811, 2252, 2273
MspR9I	CCNGG	6 cut(s)	65, 131, 2033, 2083, 2183, 2253
MunI	CAATTG	2 cut(s)	391, 1001
Mva1269I	GAATGC	2 cut(s)	1316, 1337
MvaI	CCWGG	3 cut(s)	2033, 2083, 2183
MwoI	GCNNNNNNNGC	3 cut(s)	95, 1187, 1737
NarI	GGCGCC	1 cut(s)	26
NciI	CCSGG	3 cut(s)	65, 131, 2253
NcoI	CCATGG	2 cut(s)	867, 1236
NdeI	CATATG	3 cut(s)	1746, 1874, 1921
NdeII	GATC	8 cut(s)	303, 324, 1279, 1847, 2002, 2024, 2107, 2186
NheI	GCTAGC	1 cut(s)	1976
NlaIV	GGNNCC	3 cut(s)	27, 1249, 2152
NmuCI	GTSAC	2 cut(s)	115, 1291
NsiI	ATGCAT	1 cut(s)	522
NspI	RCATGY	4 cut(s)	437, 520, 650, 1010
NspV	TTCGAA	1 cut(s)	831
OliI	CACNNNNGTG	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	1010
PciI	ACATGT	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	1721
PctI	GAATGC	2 cut(s)	1316, 1337
PdmI	GAANNNNTTC	4 cut(s)	11, 588, 708, 1182
PfeI	GAWTC	7 cut(s)	358, 380, 791, 876, 1241, 1833, 2307
PflFI	GACNNNGTC	1 cut(s)	1349
PfoI	TCCNGGA	2 cut(s)	63, 129
PinAI	ACCGGT	1 cut(s)	560
PkrI	GCNGC	7 cut(s)	83, 676, 798, 1316, 1653, 1695, 1698
PleI	GAGTC	6 cut(s)	871, 896, 1104, 1298, 1340, 1904
PluTI	GGCGCC	1 cut(s)	29
PpsI	GAGTC	6 cut(s)	871, 896, 1104, 1298, 1340, 1904
PscI	ACATGT	1 cut(s)	433
PsiI	TTATAA	1 cut(s)	1857
Psp124BI	GAGCTC	2 cut(s)	817, 1866
Psp6I	CCWGG	3 cut(s)	2031, 2081, 2181
PspFI	CCCAGC	3 cut(s)	71, 600, 2048
PspGI	CCWGG	3 cut(s)	2031, 2081, 2181
PspN4I	GGNNCC	3 cut(s)	27, 1249, 2152
PspPI	GGNCC	4 cut(s)	632, 2051, 2282, 2330
PstI	CTGCAG	1 cut(s)	1656
PstNI	CAGNNNCTG	2 cut(s)	312, 680
PsuI	RGATCY	2 cut(s)	2024, 2186
PsyI	GACNNNGTC	1 cut(s)	1349
PvuII	CAGCTG	1 cut(s)	2116
RsaI	GTAC	6 cut(s)	515, 651, 1022, 1871, 1904, 1915
RsaNI	GTAC	6 cut(s)	514, 650, 1021, 1870, 1903, 1914
RseI	CAYNNNNRTG	4 cut(s)	111, 122, 931, 2229
SacI	GAGCTC	2 cut(s)	817, 1866
SalI	GTCGAC	1 cut(s)	2093
SapI	GCTCTTC	1 cut(s)	1721
SaqAI	TTAA	5 cut(s)	467, 1032, 1556, 1758, 1941
SatI	GCNGC	7 cut(s)	82, 675, 797, 1315, 1652, 1694, 1697
Sau3AI	GATC	8 cut(s)	303, 324, 1279, 1847, 2002, 2024, 2107, 2186
Sau96I	GGNCC	4 cut(s)	632, 2051, 2282, 2330
SchI	GAGTC	6 cut(s)	872, 896, 1105, 1299, 1340, 1905
ScrFI	CCNGG	6 cut(s)	65, 131, 2033, 2083, 2183, 2253
SduI	GDGCHC	3 cut(s)	817, 1824, 1866
SexAI	ACCWGGT	1 cut(s)	2081
SfaNI	GCATC	7 cut(s)	318, 686, 1350, 1471, 1516, 2273, 2332
SfcI	CTRYAG	1 cut(s)	1652
SfoI	GGCGCC	1 cut(s)	27
SfuI	TTCGAA	1 cut(s)	831
SinI	GGWCC	3 cut(s)	632, 2282, 2330
SmiMI	CAYNNNNRTG	4 cut(s)	111, 122, 931, 2229
SmlI	CTYRAG	6 cut(s)	593, 808, 1196, 1712, 2020, 2137
SmoI	CTYRAG	6 cut(s)	593, 808, 1196, 1712, 2020, 2137
SphI	GCATGC	1 cut(s)	1010
SsiI	CCGC	3 cut(s)	217, 1626, 2071
SspDI	GGCGCC	1 cut(s)	25
SspMI	CTAG	5 cut(s)	377, 818, 1851, 1977, 1992
SstI	GAGCTC	2 cut(s)	817, 1866
StyD4I	CCNGG	6 cut(s)	63, 129, 2031, 2081, 2181, 2251
StyI	CCWWGG	4 cut(s)	867, 1236, 2007, 2354
TaaI	ACNGT	7 cut(s)	22, 190, 247, 948, 1025, 1522, 1660
TaiI	ACGT	2 cut(s)	141, 2207
TaqI	TCGA	7 cut(s)	33, 775, 831, 981, 1684, 1791, 2094
TaqII	GACCGA	2 cut(s)	257, 1339
TatI	WGTACW	4 cut(s)	513, 1020, 1869, 1902
TfiI	GAWTC	7 cut(s)	358, 380, 791, 876, 1241, 1833, 2307
Tru1I	TTAA	5 cut(s)	467, 1032, 1556, 1758, 1941
Tru9I	TTAA	5 cut(s)	467, 1032, 1556, 1758, 1941
TscAI	CASTG	7 cut(s)	252, 377, 460, 953, 1030, 1940, 2005
TseFI	GTSAC	2 cut(s)	115, 1291
TseI	GCWGC	7 cut(s)	81, 674, 796, 1314, 1651, 1693, 1696
Tsp45I	GTSAC	2 cut(s)	115, 1291
TspDTI	ATGAA	6 cut(s)	567, 831, 1192, 1292, 1365, 1377
TspGWI	ACGGA	1 cut(s)	2289
TspRI	CASTG	7 cut(s)	252, 377, 460, 953, 1030, 1940, 2005
Tth111I	GACNNNGTC	1 cut(s)	1349
VpaK11BI	GGWCC	3 cut(s)	632, 2282, 2330
XagI	CCTNNNNNAGG	2 cut(s)	1340, 1769
XapI	RAATTY	5 cut(s)	496, 586, 685, 2176, 2359
XceI	RCATGY	4 cut(s)	437, 520, 650, 1010
XmiI	GTMKAC	2 cut(s)	1099, 2094
XmnI	GAANNNNTTC	4 cut(s)	11, 588, 708, 1182
XspI	CTAG	5 cut(s)	377, 818, 1851, 1977, 1992
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.