RchiOBHm_Chr6g0308841

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020579
Physical Location & Seq
Forward (+)
66871747 .. 66874382
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27772

Sequence Viewer

Length: 264 bp
ATGAGGGAGGGAGAGCCCTACTTGCATCATGAGTATGTGGGGAAGTTTCAGGTTCCGAGTTGTAGGAGCATGGCAAGACCTGGGGAGCGGTGTGATTGGGTTGGCGGTGAGAGAATTCAGGAAGTAGAGGAACAGGAGGAGGAGGAGGAAGAATCTAACAACGCTAATGGGGGCACACAATCATCAGAGATGTTGGTGGATCCTCCTTATGTGGCCAGTGGTGCTGAAACTGTAGACCATACGGATGCGCCTAATGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

87

Amino Acids

9.7

Weight (kDa)

4.24

Isoelectric Point (pI)

62.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020579)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0308841
rosa_roxburghii Rroxscaffold_6G00406130
rosa_samantha Rh7AG269400 Rh7CG288600
rosa_wichuraiana Rw0G011010 Rw2G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 234
AciI CCGC 2 cut(s) 88, 105
AclWI GGATC 2 cut(s) 194, 207
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 114
AjnI CCWGG 1 cut(s) 79
AlwI GGATC 2 cut(s) 194, 207
AoxI GGCC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 114
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 176
BalI TGGCCA 1 cut(s) 215
BamHI GGATCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 54, 201
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 3 cut(s) 34, 235, 247
BsaJI CCNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 3 cut(s) 152, 155, 158
BseSI GKGCMC 1 cut(s) 176
BshFI GGCC 1 cut(s) 215
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 18, 176
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 2 cut(s) 88, 105
BspANI GGCC 1 cut(s) 215
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 54, 201
BspPI GGATC 2 cut(s) 194, 207
BsrBI CCGCTC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 232
BstF5I GGATG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 22, 221
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 223
CciI TCATGA 1 cut(s) 28
CfoI GCGC 1 cut(s) 250
CviAII CATG 2 cut(s) 29, 70
CviJI RGCY 2 cut(s) 16, 215
CviKI_1 RGCY 2 cut(s) 16, 215
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 2 cut(s) 32, 73
FaiI YATR 5 cut(s) 30, 36, 71, 210, 240
FatI CATG 2 cut(s) 28, 69
FblI GTMKAC 1 cut(s) 234
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 18
GlaI GCGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 215
HhaI GCGC 1 cut(s) 250
Hin1II CATG 2 cut(s) 32, 73
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 1 cut(s) 152
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 57, 187
Hpy188III TCNNGA 2 cut(s) 29, 119
Hpy8I GTNNAC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 221
Hsp92II CATG 2 cut(s) 32, 73
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 66, 85
LpnPI CCDG 6 cut(s) 35, 66, 93, 104, 119, 229
LweI GCATC 3 cut(s) 34, 235, 247
MalI GATC 1 cut(s) 201
MbiI CCGCTC 1 cut(s) 88
MboI GATC 1 cut(s) 199
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 18, 176
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 1 cut(s) 114
MluNI TGGCCA 1 cut(s) 215
MnlI CCTC 6 cut(s) 121, 130, 133, 136, 139, 213
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MseI TTAA 1 cut(s) 262
MslI CAYNNNNRTG 2 cut(s) 33, 243
Msp20I TGGCCA 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 22, 221
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 32, 73
NlaIV GGNNCC 2 cut(s) 54, 201
PagI TCATGA 1 cut(s) 28
PfeI GAWTC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 54, 201
PsuI RGATCY 1 cut(s) 199
RseI CAYNNNNRTG 2 cut(s) 33, 243
SaqAI TTAA 1 cut(s) 262
Sau3AI GATC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 18, 176
SetI ASST 2 cut(s) 54, 82
SfaNI GCATC 3 cut(s) 34, 235, 247
SfcI CTRYAG 1 cut(s) 231
SmiMI CAYNNNNRTG 2 cut(s) 33, 243
Sse9I AATT 1 cut(s) 114
SsiI CCGC 2 cut(s) 88, 105
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 232
TasI AATT 1 cut(s) 114
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 262
Tru9I TTAA 1 cut(s) 262
TscAI CASTG 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 223
XapI RAATTY 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.