Rw0G011010

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00475
OG0020579
Physical Location & Seq
Reverse (-)
16805 .. 19946
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011010.1

Sequence Viewer

Length: 621 bp
ATGTTGAGCTCCTTCACAACTAAAGCTGCTTCTTTGGAAGCTGGTGCTGTTGCAATATCAAATGGGATAGCTGAGAGTGATGTGCTGAAATCATTGTCTCAAATCATTGATCCAGACTTCAGGACAGACATCGTTTTAGTTCTCCTTTTGGAACAAGTAGGGTTTATTGCAGCTGATGCCGGAGACTGGAAGTTGTGGAAGTATGTGGACGAAGCTCAGTTTGGGCCTGGGCCACCCATCAATTCGGTGTTTGTTAGGGGAAAATTAATGAATGCAGATCAAAATTTGCAAGAGGAAGCGATTTTGGTAGAAAAGATTAGAGGGGAGCAACAGAGGTTGGGTGTTGCTGAGAGTGATTGGGTTGGCGGTGAGAGAATTCAGGAAGTAGAGGAACAGGAGGAGGAGGAGGAAGAATCTAACAACGCTAATGGGGGCACACAATCATCAGAGATGCTGGTGGATCCTCCTTATGTGGCCAGTGGTGCTGAAACTGTAGACCATACGGATGCGCCTAATGATTACTTAGATTACTCAAAGATAGACAATGACGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAGAAGTACTTTGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

206

Amino Acids

22.85

Weight (kDa)

4.05

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020579)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0308841
rosa_roxburghii Rroxscaffold_6G00406130
rosa_samantha Rh7AG269400 Rh7CG288600
rosa_wichuraiana Rw0G011010 Rw2G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 495
AciI CCGC 1 cut(s) 366
AclWI GGATC 3 cut(s) 104, 455, 468
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 2 cut(s) 283, 375
AcuI CTGAAG 2 cut(s) 103, 615
AfaI GTAC 1 cut(s) 605
AfiI CCNNNNNNNGG 1 cut(s) 186
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 6 cut(s) 9, 26, 41, 71, 173, 215
AluI AGCT 6 cut(s) 9, 26, 41, 71, 173, 215
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 3 cut(s) 102, 177, 545
AlwI GGATC 3 cut(s) 104, 455, 468
AoxI GGCC 3 cut(s) 224, 230, 474
ApeKI GCWGC 2 cut(s) 26, 170
ApoI RAATTY 2 cut(s) 283, 375
AseI ATTAAT 1 cut(s) 266
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 2 cut(s) 224, 230
AsuHPI GGTGA 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 476
BamHI GGATCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 13, 182
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 3 cut(s) 102, 177, 545
BfmI CTRYAG 1 cut(s) 492
BisI GCNGC 2 cut(s) 27, 171
BlsI GCNGC 2 cut(s) 28, 172
BmcAI AGTACT 1 cut(s) 605
Bme1390I CCNGG 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 224, 230
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 3 cut(s) 166, 441, 496
BsaJI CCNNGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 3 cut(s) 191, 477, 572
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 2 cut(s) 511, 565
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 3 cut(s) 63, 230, 339
BseNI ACTGG 3 cut(s) 191, 477, 572
BseRI GAGGAG 3 cut(s) 413, 416, 419
BseSI GKGCMC 1 cut(s) 437
BseXI GCAGC 2 cut(s) 13, 182
BshFI GGCC 3 cut(s) 226, 232, 476
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 3 cut(s) 102, 177, 545
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 3 cut(s) 226, 232, 476
Bsp1286I GDGCHC 2 cut(s) 11, 437
Bsp143I GATC 4 cut(s) 109, 277, 460, 562
BspACI CCGC 1 cut(s) 366
BspANI GGCC 3 cut(s) 226, 232, 476
BspCNI CTCAG 3 cut(s) 64, 229, 340
BspLI GGNNCC 1 cut(s) 462
BspPI GGATC 3 cut(s) 104, 455, 468
BsrI ACTGG 3 cut(s) 191, 477, 572
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 4 cut(s) 109, 277, 460, 562
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 1 cut(s) 591
BstAPI GCANNNNNTGC 1 cut(s) 176
BstDEI CTNAG 4 cut(s) 72, 216, 348, 523
BstF5I GGATG 2 cut(s) 511, 565
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 4 cut(s) 112, 280, 463, 565
BstMAI GTCTC 3 cut(s) 102, 177, 545
BstMBI GATC 4 cut(s) 109, 277, 460, 562
BstMWI GCNNNNNNNGC 2 cut(s) 176, 482
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 437
BstV1I GCAGC 2 cut(s) 13, 182
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
BsuRI GGCC 3 cut(s) 226, 232, 476
BtsCI GGATG 2 cut(s) 511, 565
BtsIMutI CAGTG 2 cut(s) 484, 565
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 2 cut(s) 224, 230
CseI GACGC 1 cut(s) 599
Csp6I GTAC 1 cut(s) 604
CviAII CATG 1 cut(s) 587
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 4 cut(s) 72, 216, 348, 523
DpnI GATC 4 cut(s) 111, 279, 462, 564
DpnII GATC 4 cut(s) 109, 277, 460, 562
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Ecl136II GAGCTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 103, 615
EcoICRI GAGCTC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 1 cut(s) 590
FaiI YATR 4 cut(s) 204, 471, 501, 588
FatI CATG 1 cut(s) 586
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 27, 171
FokI GGATG 2 cut(s) 518, 572
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 27, 171
GlaI GCGC 1 cut(s) 510
GluI GCNGC 2 cut(s) 27, 171
HaeIII GGCC 3 cut(s) 226, 232, 476
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 599
HhaI GCGC 1 cut(s) 511
Hin1II CATG 1 cut(s) 590
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HinfI GANTC 1 cut(s) 413
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 2 cut(s) 208, 496
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 3 cut(s) 113, 121, 380
Hpy8I GTNNAC 2 cut(s) 208, 496
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4V TGCA 4 cut(s) 53, 170, 275, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 482
HpyF3I CTNAG 4 cut(s) 72, 216, 348, 523
Hsp92II CATG 1 cut(s) 590
HspAI GCGC 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 4 cut(s) 109, 277, 460, 562
LmnI GCTCC 2 cut(s) 14, 325
Lsp1109I GCAGC 2 cut(s) 13, 182
LweI GCATC 3 cut(s) 166, 441, 496
MalI GATC 4 cut(s) 111, 279, 462, 564
MboI GATC 4 cut(s) 109, 277, 460, 562
MboII GAAGA 2 cut(s) 422, 608
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 2 cut(s) 11, 437
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 4 cut(s) 241, 263, 283, 375
MluNI TGGCCA 1 cut(s) 476
Mox20I TGGCCA 1 cut(s) 476
MscI TGGCCA 1 cut(s) 476
MseI TTAA 2 cut(s) 266, 619
MslI CAYNNNNRTG 1 cut(s) 504
Msp20I TGGCCA 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 176, 482
NdeII GATC 4 cut(s) 109, 277, 460, 562
NlaIII CATG 1 cut(s) 590
NlaIV GGNNCC 1 cut(s) 462
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 2 cut(s) 28, 172
PshBI ATTAAT 1 cut(s) 266
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 2 cut(s) 224, 230
PsuI RGATCY 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
RseI CAYNNNNRTG 1 cut(s) 504
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 266, 619
SatI GCNGC 2 cut(s) 27, 171
Sau3AI GATC 4 cut(s) 109, 277, 460, 562
Sau96I GGNCC 2 cut(s) 224, 230
ScaI AGTACT 1 cut(s) 605
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 2 cut(s) 11, 437
SetI ASST 7 cut(s) 11, 28, 43, 73, 175, 217, 338
SfaNI GCATC 3 cut(s) 166, 441, 496
SfcI CTRYAG 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 504
Sse9I AATT 4 cut(s) 241, 263, 283, 375
SsiI CCGC 1 cut(s) 366
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 493
TasI AATT 4 cut(s) 241, 263, 283, 375
TatI WGTACW 1 cut(s) 603
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 2 cut(s) 266, 619
Tru9I TTAA 2 cut(s) 266, 619
TscAI CASTG 2 cut(s) 484, 572
TseI GCWGC 2 cut(s) 26, 170
TspDTI ATGAA 1 cut(s) 284
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 2 cut(s) 484, 572
VspI ATTAAT 1 cut(s) 266
XapI RAATTY 2 cut(s) 283, 375
XmiI GTMKAC 1 cut(s) 495
ZrmI AGTACT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.