Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0020579

Physical Location & Seq

Genomic Coordinates Reverse (-)

13158919 .. 13160194

Gene Structure 1276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAACCGGAGGCGAGCCTACCTGAATAAGGAGGGAGAGCCCTACTTGCATCATGAGTATGTGGGGAAGTTTCAGGTTCCGAGTTATACTTTGTTGCGGAGGTCAGAGGAAGCGATTTTGGTAGCAAAGATTAGAGGGGAGCAACAGAGGTTGGGTGTTGCTGAGAGTGATTGGGTTGGCGGTGAGAGAATTCAGGAAGTAGAGGAACAGGAGGAGGAGGAGGAAGAATCTAACAACGCTAATGGGGGCACACAATCATCAGAGATGCTGGTGGATCCTCCTTATGTGGCCAGTGGTGCTGAAACTGTAGACCATACGGATGCGCCTAATGATTACTTAGATTACTCAAAGATAGACAATGACGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAAGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2052

Protein Analysis

140

Amino Acids

16.08

Weight (kDa)

4.38

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020579)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0308841
rosa_roxburghii	Rroxscaffold_6G00406130
rosa_samantha	Rh7AG269400 Rh7CG288600
rosa_wichuraiana	Rw0G011010 Rw2G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	2 cut(s)	97, 180
AclWI	GGATC	2 cut(s)	269, 282
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	189
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	269, 282
AoxI	GGCC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	42
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	306
BmcAI	AGTACT	1 cut(s)	417
BmiI	GGNNCC	2 cut(s)	78, 276
BmsI	GCATC	3 cut(s)	58, 255, 310
BsaWI	WCCGGW	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	291, 386
BseGI	GGATG	2 cut(s)	325, 379
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	291, 386
BseRI	GAGGAG	3 cut(s)	227, 230, 233
BseSI	GKGCMC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	42, 251
Bsp143I	GATC	2 cut(s)	274, 376
BspACI	CCGC	2 cut(s)	97, 180
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	78, 276
BspPI	GGATC	2 cut(s)	269, 282
BsrI	ACTGG	2 cut(s)	291, 386
BssMI	GATC	2 cut(s)	274, 376
Bst4CI	ACNGT	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	162, 337
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	325, 379
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	277, 379
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	2 cut(s)	274, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 296
BstSFI	CTRYAG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	325, 379
BtsIMutI	CAGTG	2 cut(s)	298, 379
Cac8I	GCNNGC	1 cut(s)	15
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	1 cut(s)	325
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	2 cut(s)	53, 401
CviJI	RGCY	4 cut(s)	17, 40, 290, 395
CviKI_1	RGCY	4 cut(s)	17, 40, 290, 395
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	2 cut(s)	162, 337
DpnI	GATC	2 cut(s)	276, 378
DpnII	GATC	2 cut(s)	274, 376
EaeI	YGGCCR	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	42
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	2 cut(s)	56, 404
FaiI	YATR	6 cut(s)	54, 60, 87, 285, 315, 402
FalI	AAGNNNNNCTT	1 cut(s)	402
FatI	CATG	2 cut(s)	52, 400
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	309
FokI	GGATG	2 cut(s)	332, 386
FriOI	GRGCYC	1 cut(s)	42
GlaI	GCGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	2 cut(s)	56, 404
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	81, 106, 262
Hpy188III	TCNNGA	2 cut(s)	53, 194
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 296
HpyF3I	CTNAG	2 cut(s)	162, 337
Hsp92II	CATG	2 cut(s)	56, 404
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	274, 376
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	8 cut(s)	20, 35, 59, 179, 194, 254, 304, 367
LweI	GCATC	3 cut(s)	58, 255, 310
MalI	GATC	2 cut(s)	276, 378
MboI	GATC	2 cut(s)	274, 376
MboII	GAAGA	2 cut(s)	236, 422
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	2 cut(s)	42, 251
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	1 cut(s)	189
MluNI	TGGCCA	1 cut(s)	290
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MslI	CAYNNNNRTG	2 cut(s)	57, 318
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	46, 296
NdeII	GATC	2 cut(s)	274, 376
NlaIII	CATG	2 cut(s)	56, 404
NlaIV	GGNNCC	2 cut(s)	78, 276
PagI	TCATGA	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	78, 276
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	2 cut(s)	57, 318
Sau3AI	GATC	2 cut(s)	274, 376
ScaI	AGTACT	1 cut(s)	417
SduI	GDGCHC	2 cut(s)	42, 251
SetI	ASST	4 cut(s)	24, 78, 104, 152
SfaNI	GCATC	3 cut(s)	58, 255, 310
SfcI	CTRYAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	2 cut(s)	57, 318
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	2 cut(s)	97, 180
TaaI	ACNGT	1 cut(s)	307
TasI	AATT	1 cut(s)	189
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	2 cut(s)	298, 386
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	298, 386
XagI	CCTNNNNNAGG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.