RchiOBHm_Chr6g0312571

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016270
Physical Location & Seq
Forward (+)
69153250 .. 69158644
5395 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28119

Sequence Viewer

Length: 1212 bp
ATGAAGGGCCATGACCACAAGACAGATTGGCAGCTGCAGCAGATGCTCCAATATGGACATAATACTTATGTAGCTTTCCATTCAAGATTTGGCTTCAAGAAATTGAAGTATCCCTTGTCAACATTACTTGTTTTCGACCCATCCCGTAATGCAATACCAGTTGCTTGGATCATTACATCTTCTCTCGGCAGTCAAGATATCCACAAGTGGATTGGGTTACTGGCTGAAAGAATTCGAACCAAGGATCCAAGATGGAGACTCGATGCCTTTTTTGTAGATGATCCTTCCGTTGAGATTTCTATAATAAGAGAGGCTTTTCAATGCCGGGTTTTATTATGCATCTGGCATGTTCGGCGTGCTTGGATAAGAAGCCTTTTAAAGACATGCAGAAACCTTGATGTGCAGCGAGAGATGTTTAAGTACTTAGGTTGGCTGTTGTATTGTACAAGAAGTGGGCCAAATGCTATGGATGCAGTTGAAGAGTTTCTGCAAGTATTTGTTGATCAATGTGCTTTTATGGATTACTTTAAGAGGCGATGGTTACCAAATATAGAGTTGTGGGTCAATGGTATAAGGTCTCTTCCTGTGGCCAGTCCAGAGCCGAATGCTGCAGTTGAGTCCTATCATTTAAGGTTGAAATCCAAGCTTTTCAATGAGCAATATTCTAGCTTCTGGTCAAGAGTTGACTGGTTAATCCACACACTTACAACTGAATTCCAATCATCCTATTGGTTGGACCAATATAGCGTAGAGACTGGGTGTTTTGAAAATCTGAGGGACAGGTCTTTCTTAACCAATTCTTGGTATCAGGCTTTGCAGATCCTAGATGTTGATGTCATAATTGATGAGCAAAATCTACAGTATGCAAAAGTCATCTCACAATCAGACAGAAGCGTGGCGTACACGATCTGGAACCCTGGTTCAGAATTCTCTTTGTGTGATTGCCCTTCGTCGATGCTGGGGAATCTCTGTAAGCATATCATCAAGGTGGCAATCTTGTGTAAAAGTCGGCAGGTTGCGAGACCTTTATTGGCTGCCCAAGTTTATAGCCAGGCTTTGCTTACCCTTCTACAAAATCCCCCAGATGATCCTGTAGTTCTTGATCATGCTTATTACATGCAACTCGCTTGCAACAGGACATCAAAGGCTTGGAAGATTTATCCAATAGTGGGTTGCTCCAGTCGTTACCTTCAGAGATTAACTCTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MULE SWIM

Protein Analysis

403

Amino Acids

47.17

Weight (kDa)

8.73

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30231 FvH4_2g30231
malus_domestica MD08G1135300.v1.1
prunus_persica Prupe.1G465300_v2.0.a1
pyrus_communis pycom08g11430
rosa_chinensis RchiOBHm_Chr6g0312571 RchiOBHm_Chr6g0312641
rosa_laevigata RLG00000010308
rosa_multiflora Rmu_sc0002859.1_g000006 Rmu_ssc0000412.1_g000004
rosa_roxburghii Rroxscaffold_7G00156620
rosa_rugosa Rorug06G0397900
rosa_samantha Rh6AG515200 Rh6CG530100
rosa_wichuraiana Rw6G044770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1003
AccB7I CCANNNNNTGG 1 cut(s) 801
AclWI GGATC 6 cut(s) 176, 239, 252, 275, 814, 1082
AcoI YGGCCR 1 cut(s) 588
AcsI RAATTY 3 cut(s) 231, 713, 926
AcuI CTGAAG 1 cut(s) 1175
AfaI GTAC 3 cut(s) 422, 445, 902
AfiI CCNNNNNNNGG 2 cut(s) 801, 1169
AgsI TTSAA 8 cut(s) 84, 97, 106, 320, 479, 637, 652, 767
AjnI CCWGG 2 cut(s) 916, 1050
AloI GAACNNNNNNTCC 4 cut(s) 229, 261, 904, 936
AluBI AGCT 4 cut(s) 34, 74, 646, 669
AluI AGCT 4 cut(s) 34, 74, 646, 669
Alw26I GTCTC 4 cut(s) 250, 582, 746, 1015
AlwI GGATC 6 cut(s) 176, 239, 252, 275, 814, 1082
AoxI GGCC 3 cut(s) 7, 455, 588
ApeKI GCWGC 6 cut(s) 31, 34, 37, 403, 608, 1034
ApoI RAATTY 3 cut(s) 231, 713, 926
Asp700I GAANNNNTTC 2 cut(s) 231, 483
AspS9I GGNCC 3 cut(s) 7, 455, 736
AsuC2I CCSGG 1 cut(s) 326
AsuII TTCGAA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 736
BalI TGGCCA 1 cut(s) 590
BamHI GGATCC 1 cut(s) 244
BbvI GCAGC 6 cut(s) 21, 43, 49, 415, 595, 1021
BccI CCATC 3 cut(s) 148, 246, 531
BciT130I CCWGG 2 cut(s) 918, 1052
BciVI GTATCC 1 cut(s) 120
BclI TGATCA 2 cut(s) 502, 1102
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 4 cut(s) 250, 582, 746, 1015
BfaI CTAG 2 cut(s) 666, 824
BfmI CTRYAG 4 cut(s) 35, 609, 857, 1092
BfuAI ACCTGC 1 cut(s) 1003
BfuI GTATCC 1 cut(s) 120
BisI GCNGC 6 cut(s) 32, 35, 38, 404, 609, 1035
BlsI GCNGC 6 cut(s) 33, 36, 39, 405, 610, 1036
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 3 cut(s) 326, 918, 1052
Bme18I GGWCC 1 cut(s) 736
BmgT120I GGNCC 3 cut(s) 7, 455, 736
BmiI GGNNCC 2 cut(s) 246, 914
BmrFI CCNGG 3 cut(s) 326, 918, 1052
BmrI ACTGGG 1 cut(s) 765
BmsI GCATC 5 cut(s) 33, 253, 348, 460, 945
BmuI ACTGGG 1 cut(s) 765
BplI GAGNNNNNCTC 1 cut(s) 1186
BpmI CTGGAG 1 cut(s) 1162
Bpu14I TTCGAA 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 326
BsaI GGTCTC 2 cut(s) 582, 1015
BsaJI CCNNGG 2 cut(s) 240, 916
Bsc4I CCNNNNNNNGG 2 cut(s) 801, 1169
Bse1I ACTGG 6 cut(s) 158, 225, 591, 692, 760, 1179
BseBI CCWGG 2 cut(s) 918, 1052
BseDI CCNNGG 2 cut(s) 240, 916
BseGI GGATG 3 cut(s) 140, 475, 722
BseLI CCNNNNNNNGG 2 cut(s) 801, 1169
BseMII CTCAG 1 cut(s) 764
BseNI ACTGG 6 cut(s) 158, 225, 591, 692, 760, 1179
BseXI GCAGC 6 cut(s) 21, 43, 49, 415, 595, 1021
BseYI CCCAGC 1 cut(s) 958
BsgI GTGCAG 1 cut(s) 422
BshFI GGCC 3 cut(s) 9, 457, 590
BsiSI CCGG 1 cut(s) 325
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 2 cut(s) 801, 1169
BsmAI GTCTC 4 cut(s) 250, 582, 746, 1015
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 3 cut(s) 9, 457, 590
Bso31I GGTCTC 2 cut(s) 582, 1015
Bsp119I TTCGAA 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 443
Bsp143I GATC 8 cut(s) 168, 244, 280, 502, 819, 906, 1087, 1102
BspANI GGCC 3 cut(s) 9, 457, 590
BspCNI CTCAG 1 cut(s) 765
BspLI GGNNCC 2 cut(s) 246, 914
BspMAI CTGCAG 2 cut(s) 39, 613
BspMI ACCTGC 1 cut(s) 1003
BspPI GGATC 6 cut(s) 176, 239, 252, 275, 814, 1082
BspT104I TTCGAA 1 cut(s) 235
BspTNI GGTCTC 2 cut(s) 582, 1015
BsrGI TGTACA 1 cut(s) 443
BsrI ACTGG 6 cut(s) 158, 225, 591, 692, 760, 1179
BssECI CCNNGG 2 cut(s) 240, 916
BssMI GATC 8 cut(s) 168, 244, 280, 502, 819, 906, 1087, 1102
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 918, 1052
Bst4CI ACNGT 1 cut(s) 861
Bst6I CTCTTC 2 cut(s) 474, 585
BstAPI GCANNNNNTGC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 443
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 357, 1129
BstDEI CTNAG 2 cut(s) 424, 773
BstEII GGTNACC 1 cut(s) 540
BstF5I GGATG 3 cut(s) 140, 475, 722
BstKTI GATC 8 cut(s) 171, 247, 283, 505, 822, 909, 1090, 1105
BstMAI GTCTC 4 cut(s) 250, 582, 746, 1015
BstMBI GATC 8 cut(s) 168, 244, 280, 502, 819, 906, 1087, 1102
BstMWI GCNNNNNNNGC 4 cut(s) 37, 43, 352, 470
BstNI CCWGG 2 cut(s) 918, 1052
BstNSI RCATGY 3 cut(s) 350, 387, 1120
BstPI GGTNACC 1 cut(s) 540
BstSCI CCNGG 3 cut(s) 324, 916, 1050
BstSFI CTRYAG 4 cut(s) 35, 609, 857, 1092
BstV1I GCAGC 6 cut(s) 21, 43, 49, 415, 595, 1021
BstX2I RGATCY 2 cut(s) 244, 819
BstXI CCANNNNNNTGG 1 cut(s) 165
BstYI RGATCY 2 cut(s) 244, 819
BsuI GTATCC 1 cut(s) 120
BsuRI GGCC 3 cut(s) 9, 457, 590
BtgZI GCGATG 1 cut(s) 550
BtsCI GGATG 3 cut(s) 140, 475, 722
BveI ACCTGC 1 cut(s) 1003
Cac8I GCNNGC 2 cut(s) 357, 1129
Cfr13I GGNCC 3 cut(s) 7, 455, 736
Csp6I GTAC 3 cut(s) 421, 444, 901
CviAII CATG 6 cut(s) 11, 347, 384, 1106, 1117, 1207
CviQI GTAC 3 cut(s) 421, 444, 901
DdeI CTNAG 2 cut(s) 424, 773
DpnI GATC 8 cut(s) 170, 246, 282, 504, 821, 908, 1089, 1104
DpnII GATC 8 cut(s) 168, 244, 280, 502, 819, 906, 1087, 1102
DraI TTTAAA 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 474, 585
EarI CTCTTC 2 cut(s) 474, 585
Eco130I CCWWGG 1 cut(s) 240
Eco31I GGTCTC 2 cut(s) 582, 1015
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 736
Eco57I CTGAAG 1 cut(s) 1175
Eco91I GGTNACC 1 cut(s) 540
EcoO65I GGTNACC 1 cut(s) 540
EcoRI GAATTC 3 cut(s) 231, 713, 926
EcoRII CCWGG 2 cut(s) 916, 1050
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 6 cut(s) 14, 350, 387, 1109, 1120, 1210
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 298, 330
FaqI GGGAC 1 cut(s) 791
FatI CATG 6 cut(s) 10, 346, 383, 1105, 1116, 1206
FbaI TGATCA 2 cut(s) 502, 1102
Fnu4HI GCNGC 6 cut(s) 32, 35, 38, 404, 609, 1035
FokI GGATG 3 cut(s) 127, 482, 709
Fsp4HI GCNGC 6 cut(s) 32, 35, 38, 404, 609, 1035
FspBI CTAG 2 cut(s) 666, 824
GluI GCNGC 6 cut(s) 32, 35, 38, 404, 609, 1035
GsaI CCCAGC 1 cut(s) 962
GsuI CTGGAG 1 cut(s) 1162
HaeIII GGCC 3 cut(s) 9, 457, 590
HapII CCGG 1 cut(s) 325
Hin1II CATG 6 cut(s) 14, 350, 387, 1109, 1120, 1210
HincII GTYRAC 2 cut(s) 120, 685
HindII GTYRAC 2 cut(s) 120, 685
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 3 cut(s) 258, 617, 964
HpaII CCGG 1 cut(s) 325
Hpy166II GTNNAC 3 cut(s) 120, 685, 903
Hpy188I TCNGA 4 cut(s) 774, 886, 925, 1194
Hpy188III TCNNGA 7 cut(s) 84, 97, 194, 596, 678, 910, 1100
Hpy8I GTNNAC 3 cut(s) 120, 685, 903
Hpy99I CGWCG 1 cut(s) 955
HpyAV CCTTC 4 cut(s) 294, 957, 1076, 1199
HpyCH4III ACNGT 1 cut(s) 861
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 43, 352, 470
HpyF3I CTNAG 2 cut(s) 424, 773
Hsp92II CATG 6 cut(s) 14, 350, 387, 1109, 1120, 1210
Ksp22I TGATCA 2 cut(s) 502, 1102
Kzo9I GATC 8 cut(s) 168, 244, 280, 502, 819, 906, 1087, 1102
LmnI GCTCC 2 cut(s) 51, 1181
Lsp1109I GCAGC 6 cut(s) 21, 43, 49, 415, 595, 1021
LweI GCATC 5 cut(s) 33, 253, 348, 460, 945
MaeI CTAG 2 cut(s) 666, 824
MaeIII GTNAC 3 cut(s) 216, 540, 1184
MalI GATC 8 cut(s) 170, 246, 282, 504, 821, 908, 1089, 1104
MboI GATC 8 cut(s) 168, 244, 280, 502, 819, 906, 1087, 1102
MboII GAAGA 4 cut(s) 171, 491, 572, 1165
MflI RGATCY 2 cut(s) 244, 819
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 6 cut(s) 101, 231, 713, 796, 840, 926
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 2 cut(s) 252, 626
MmeI TCCRAC 1 cut(s) 714
MnlI CCTC 3 cut(s) 304, 525, 768
Mox20I TGGCCA 1 cut(s) 590
Mph1103I ATGCAT 1 cut(s) 341
MroXI GAANNNNTTC 2 cut(s) 231, 483
MscI TGGCCA 1 cut(s) 590
MseI TTAA 7 cut(s) 377, 417, 528, 629, 692, 791, 1199
MslI CAYNNNNRTG 1 cut(s) 986
Msp20I TGGCCA 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 3 cut(s) 326, 918, 1052
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 2 cut(s) 918, 1052
MwoI GCNNNNNNNGC 4 cut(s) 37, 43, 352, 470
NciI CCSGG 1 cut(s) 326
NdeII GATC 8 cut(s) 168, 244, 280, 502, 819, 906, 1087, 1102
NlaIII CATG 6 cut(s) 14, 350, 387, 1109, 1120, 1210
NlaIV GGNNCC 2 cut(s) 246, 914
NmeAIII GCCGAG 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 341
NspI RCATGY 3 cut(s) 350, 387, 1120
NspV TTCGAA 1 cut(s) 235
PctI GAATGC 1 cut(s) 610
PdmI GAANNNNTTC 2 cut(s) 231, 483
PfeI GAWTC 1 cut(s) 964
PflMI CCANNNNNTGG 1 cut(s) 801
PkrI GCNGC 6 cut(s) 33, 36, 39, 405, 610, 1036
PleI GAGTC 2 cut(s) 252, 625
PpsI GAGTC 2 cut(s) 252, 625
Psp6I CCWGG 2 cut(s) 916, 1050
PspEI GGTNACC 1 cut(s) 540
PspFI CCCAGC 1 cut(s) 958
PspGI CCWGG 2 cut(s) 916, 1050
PspN4I GGNNCC 2 cut(s) 246, 914
PspPI GGNCC 3 cut(s) 7, 455, 736
PstI CTGCAG 2 cut(s) 39, 613
PsuI RGATCY 2 cut(s) 244, 819
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 3 cut(s) 422, 445, 902
RsaNI GTAC 3 cut(s) 421, 444, 901
RseI CAYNNNNRTG 1 cut(s) 986
SaqAI TTAA 7 cut(s) 377, 417, 528, 629, 692, 791, 1199
SatI GCNGC 6 cut(s) 32, 35, 38, 404, 609, 1035
Sau3AI GATC 8 cut(s) 168, 244, 280, 502, 819, 906, 1087, 1102
Sau96I GGNCC 3 cut(s) 7, 455, 736
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 2 cut(s) 252, 626
ScrFI CCNGG 3 cut(s) 326, 918, 1052
SfaNI GCATC 5 cut(s) 33, 253, 348, 460, 945
SfcI CTRYAG 4 cut(s) 35, 609, 857, 1092
SfuI TTCGAA 1 cut(s) 235
SinI GGWCC 1 cut(s) 736
SmiMI CAYNNNNRTG 1 cut(s) 986
Sse9I AATT 6 cut(s) 101, 231, 713, 796, 840, 926
SspI AATATT 1 cut(s) 662
SspMI CTAG 2 cut(s) 666, 824
StyD4I CCNGG 3 cut(s) 324, 916, 1050
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 861
TaqI TCGA 4 cut(s) 135, 235, 261, 953
TasI AATT 6 cut(s) 101, 231, 713, 796, 840, 926
TatI WGTACW 2 cut(s) 420, 443
TfiI GAWTC 1 cut(s) 964
Tru1I TTAA 7 cut(s) 377, 417, 528, 629, 692, 791, 1199
Tru9I TTAA 7 cut(s) 377, 417, 528, 629, 692, 791, 1199
TseI GCWGC 6 cut(s) 31, 34, 37, 403, 608, 1034
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 277
Van91I CCANNNNNTGG 1 cut(s) 801
VpaK11BI GGWCC 1 cut(s) 736
XapI RAATTY 3 cut(s) 231, 713, 926
XceI RCATGY 3 cut(s) 350, 387, 1120
XcmI CCANNNNNNNNNTGG 2 cut(s) 86, 209
XmnI GAANNNNTTC 2 cut(s) 231, 483
XspI CTAG 2 cut(s) 666, 824
ZrmI AGTACT 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.