RLG00000010308

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016270
Physical Location & Seq
Forward (+)
478812 .. 484089
5278 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010308

Sequence Viewer

Length: 2181 bp
ATGAAGGGCCATGACCACAAGATGGCTAGAATGGAGGACATTCTTAATCTTCCGGTGCAAGATCCTGCGTGTCCCGAATTTTCTGCTGCTCATATCAAATGGGTAAAAGTAGAAGGCGGTCGCCAGGGTGGTGATGATATTGCCCTCATCCCATTTGCTCGAGTGGATGATTTTGTGAAGGGAGAATCTTCAAATGCTGATTGCCCTGCCAGCTTCCGCATTGAGTCAAAAAGGAAGAGAGCTGAAGGGAGCGTAAGCAAGCCGAGGGTCGATGGCTATCTTGAATATACACTATACTGGTGTTCTTATGGCCCTGAAGACTACAGAGAAAGTGAATCTGGTATGATGGATGGTTCTAGTATGATGAAGCCTGCATCAGGAAAGGGGAGCAGGCCTGGGCGGCGTCACATGATGAGAGGCTGCCTCTGCCATTTTACTGTAAAACGCTTATATACACGGCCACTCATTGCTCTTATTATCTATAACCAGAGAACACATGTAGATAAATCAGGAGCCCCTTGTCATGGCATACTTGATCGGGATTCTATGGGAACGAGAGCTATGTATGCTCCACGAATTTCGGAGGAGCAACGCCTGAAAGTGATGTCTATGCTTTATGTTGGAATACCTTTGGACAATATAATTCAGCATCACATGGAGGTAGTCCAGGAGCATGGAGGACCCCTTAACCGTGATGATTTTCTGAGTCGTAGTGATGTTCGTAACATGGAAAGGCTGATTCGTAATTCTTCTCATGAGCTACATGCAGATGATGGATGCAGTGTAAAGATTTGGGTTCAACGCCATCGTAAGCATGTTTTCTACTTTGAAGACAGCTTTAATTCAGAACCATTTGTCTTAGGGATACAGACAGATTGGCAGCTGCAGCAGATGCTCCAATACGGACATAATAGTTATGTAGCTTTCCATTCAAGATTTGGCTTCAAGAAATTGAAGTATCCCTTGTCGACATTACTTGTTTTCGACCCATCCCGTAATGCAATACCAGTTGCTTGGATCATTACATCTTCTCTCGGCAGTCAAGATATCCACAAGTGGATTGGGTTACTGGCTGAAAGAATTCGAACCAAGGATCCAAGATGGAGACTTGATGCCTTTTTTGTAGATGATCCTTCCATTGAGATTTCTATAGTAAGAGAGGCTTTTCAATGCCGGGTTTTATTATGCATCTGGCACGTTCGGCGTGCTTGGATAAGAAGCCTTTTAAAGACATGCCGAAACTTTGATGTGCAGCGAGAGATGTTTAAGCACTTAGGTTGGCTGTTGTATTGTACAAGAAGTGGGCCAAATGCTATGGATGCAGTTGAAGAGTTTCTGCAAGTATTTGTTGATCAATGTGCTTTTATGGATTACTTTAAGAGGCGATGGTTGCCAAATATAGAGTTGTGGGTCAATGGTATAAGGTCTCTTCCTGTGGCCAGTCCAGAGCTGAATGCTGCAGTTGAGTCCTATCATTTAAGGTTGAAATCCAAGCTTTTCAATGAGCAATATTCTAACTCCTGGTCAAGAGTTGACTGGTTAATCCACACACTTACGACTGAGTTCCAATCATCCTATTGGTTGGACCAATATAGCGTAGAGACTGGGTGTTTTGAAAATCTGAGGGACAGGTCTTTCTTAACCAATTCTTGGTATCAGGCTTTGCAGATCCTAGATGTTGATGTCATAATTGATGAGCAAAATCTACAGTATGCAAAAGTCATCTCACAATCAGACAGAAGCGTGGCGTACACGATCTGGAACCCTGGTTCAGAATTTTCTTTGTGTGATTGCCCTTCGTCGATGCTGGGAAATCTCTGTAAGCATATCATCAAGGTGGCAATCTTGTGCAAAAGTCGGCAGGTTGCGAGACCTTTATTGGCTGCCCAAGTTTATAGGCAGGCTTTGCTTACCCTTCTACAAAATCCCCCAGATGATCCTGTAGTTCTTGATCATGCTATTTTACATGCAACCCGCTTGCAACAGGACATCAAAGGCTTGGAAGATTTATCCAATAGTGGTCAGACTTCGCTTGGCAAACTTCTAAATGCTTTGGCATTCAAGCCTCTTTCTCTTTCTCTCTCTATCTCAGCTGTGACACTGCAGAGTTGTGGAGATAAAGAGTTCATGGCAATTTACACCAGATGTGGAAATGCTTTTCCAGGTCATGGAAGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MULE SWIM

Protein Analysis

727

Amino Acids

83.25

Weight (kDa)

8.29

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30231 FvH4_2g30231
malus_domestica MD08G1135300.v1.1
prunus_persica Prupe.1G465300_v2.0.a1
pyrus_communis pycom08g11430
rosa_chinensis RchiOBHm_Chr6g0312571 RchiOBHm_Chr6g0312641
rosa_laevigata RLG00000010308
rosa_multiflora Rmu_sc0002859.1_g000006 Rmu_ssc0000412.1_g000004
rosa_roxburghii Rroxscaffold_7G00156620
rosa_rugosa Rorug06G0397900
rosa_samantha Rh6AG515200 Rh6CG530100
rosa_wichuraiana Rw6G044770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1852
AccB7I CCANNNNNTGG 3 cut(s) 22, 1650, 2168
AccI GTMKAC 1 cut(s) 968
AciI CCGC 4 cut(s) 117, 217, 400, 1975
AclWI GGATC 7 cut(s) 56, 1025, 1088, 1101, 1124, 1663, 1931
AcoI YGGCCR 2 cut(s) 458, 1437
AcsI RAATTY 4 cut(s) 77, 576, 1080, 1775
AcuI CTGAAG 2 cut(s) 264, 336
AcyI GRCGYC 1 cut(s) 403
AfaI GTAC 2 cut(s) 1294, 1751
AfiI CCNNNNNNNGG 5 cut(s) 22, 377, 524, 1650, 2168
AflIII ACRYGT 1 cut(s) 496
AjnI CCWGG 6 cut(s) 123, 394, 666, 1520, 1765, 2161
AloI GAACNNNNNNTCC 4 cut(s) 1078, 1110, 1753, 1785
Alw26I GTCTC 4 cut(s) 1099, 1431, 1595, 1864
AlwI GGATC 7 cut(s) 56, 1025, 1088, 1101, 1124, 1663, 1931
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 6 cut(s) 7, 310, 392, 458, 1304, 1437
ApeKI GCWGC 8 cut(s) 86, 420, 880, 883, 886, 1252, 1457, 1883
ApoI RAATTY 4 cut(s) 77, 576, 1080, 1775
Asp700I GAANNNNTTC 2 cut(s) 1080, 1332
AspS9I GGNCC 5 cut(s) 7, 311, 680, 1304, 1585
AsuC2I CCSGG 1 cut(s) 1175
AsuHPI GGTGA 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 1084
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 2 cut(s) 680, 1585
BalI TGGCCA 1 cut(s) 1439
BamHI GGATCC 1 cut(s) 1093
BanII GRGCYC 1 cut(s) 517
BbsI GAAGAC 2 cut(s) 324, 837
BbvI GCAGC 8 cut(s) 73, 407, 870, 892, 898, 1264, 1444, 1870
BccI CCATC 9 cut(s) 16, 266, 340, 344, 767, 813, 997, 1095, 1380
BceAI ACGGC 1 cut(s) 473
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 6 cut(s) 125, 396, 668, 1522, 1767, 2163
BciVI GTATCC 2 cut(s) 858, 969
BclI TGATCA 2 cut(s) 1351, 1951
BcnI CCSGG 1 cut(s) 1175
BcoDI GTCTC 4 cut(s) 1099, 1431, 1595, 1864
BfaI CTAG 3 cut(s) 27, 357, 1673
BfmI CTRYAG 7 cut(s) 322, 884, 1149, 1458, 1706, 1941, 2102
BfuAI ACCTGC 1 cut(s) 1852
BfuI GTATCC 2 cut(s) 858, 969
BglI GCCNNNNNGGC 1 cut(s) 400
BisI GCNGC 9 cut(s) 87, 401, 421, 881, 884, 887, 1253, 1458, 1884
BlsI GCNGC 9 cut(s) 88, 402, 422, 882, 885, 888, 1254, 1459, 1885
Bme1390I CCNGG 7 cut(s) 125, 396, 668, 1175, 1522, 1767, 2163
Bme18I GGWCC 2 cut(s) 680, 1585
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 5 cut(s) 7, 311, 680, 1304, 1585
BmiI GGNNCC 4 cut(s) 514, 682, 1095, 1763
BmrFI CCNGG 7 cut(s) 125, 396, 668, 1175, 1522, 1767, 2163
BmrI ACTGGG 1 cut(s) 1614
BmsI GCATC 8 cut(s) 383, 658, 767, 882, 1102, 1197, 1309, 1794
BmuI ACTGGG 1 cut(s) 1614
BpiI GAAGAC 2 cut(s) 324, 837
BplI GAGNNNNNCTC 2 cut(s) 408, 440
Bpu14I TTCGAA 1 cut(s) 1084
BpuMI CCSGG 1 cut(s) 1175
BsaBI GATNNNNATC 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 403
BsaI GGTCTC 2 cut(s) 1431, 1864
BsaJI CCNNGG 5 cut(s) 124, 263, 395, 1089, 1765
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 377, 524, 1650, 2168
Bse1I ACTGG 6 cut(s) 302, 1007, 1074, 1440, 1541, 1609
Bse3DI GCAATG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 6 cut(s) 125, 396, 668, 1522, 1767, 2163
BseDI CCNNGG 5 cut(s) 124, 263, 395, 1089, 1765
BseGI GGATG 7 cut(s) 147, 172, 355, 782, 989, 1324, 1571
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 5 cut(s) 22, 377, 524, 1650, 2168
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 4 cut(s) 695, 1551, 1613, 2103
BseNI ACTGG 6 cut(s) 302, 1007, 1074, 1440, 1541, 1609
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 8 cut(s) 73, 407, 870, 892, 898, 1264, 1444, 1870
BseYI CCCAGC 1 cut(s) 1807
BsgI GTGCAG 1 cut(s) 1271
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 6 cut(s) 9, 312, 394, 460, 1306, 1439
BsiEI CGRYCG 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 2 cut(s) 53, 1174
BslFI GGGAC 2 cut(s) 57, 1640
BslI CCNNNNNNNGG 5 cut(s) 22, 377, 524, 1650, 2168
BsmAI GTCTC 4 cut(s) 1099, 1431, 1595, 1864
BsmFI GGGAC 2 cut(s) 57, 1640
BsmI GAATGC 2 cut(s) 1459, 2057
BsnI GGCC 6 cut(s) 9, 312, 394, 460, 1306, 1439
Bso31I GGTCTC 2 cut(s) 1431, 1864
BsoBI CYCGRG 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 1084
Bsp1286I GDGCHC 1 cut(s) 517
Bsp1407I TGTACA 1 cut(s) 1292
BspACI CCGC 4 cut(s) 117, 217, 400, 1975
BspANI GGCC 6 cut(s) 9, 312, 394, 460, 1306, 1439
BspCNI CTCAG 4 cut(s) 696, 1552, 1614, 2102
BspHI TCATGA 1 cut(s) 754
BspLI GGNNCC 4 cut(s) 514, 682, 1095, 1763
BspMAI CTGCAG 3 cut(s) 888, 1462, 2106
BspMI ACCTGC 1 cut(s) 1852
BspPI GGATC 7 cut(s) 56, 1025, 1088, 1101, 1124, 1663, 1931
BspT104I TTCGAA 1 cut(s) 1084
BspTNI GGTCTC 2 cut(s) 1431, 1864
BsrDI GCAATG 1 cut(s) 465
BsrGI TGTACA 1 cut(s) 1292
BsrI ACTGG 6 cut(s) 302, 1007, 1074, 1440, 1541, 1609
BssECI CCNNGG 5 cut(s) 124, 263, 395, 1089, 1765
BssNI GRCGYC 1 cut(s) 403
BssT1I CCWWGG 1 cut(s) 1089
Bst2UI CCWGG 6 cut(s) 125, 396, 668, 1522, 1767, 2163
Bst4CI ACNGT 3 cut(s) 439, 692, 1710
Bst6I CTCTTC 3 cut(s) 230, 1323, 1434
BstACI GRCGYC 1 cut(s) 403
BstAPI GCANNNNNTGC 2 cut(s) 892, 1906
BstAUI TGTACA 1 cut(s) 1292
BstBI TTCGAA 1 cut(s) 1084
BstC8I GCNNGC 7 cut(s) 211, 260, 372, 392, 1206, 1902, 1979
BstDEI CTNAG 6 cut(s) 704, 859, 1273, 1560, 1622, 2089
BstENI CCTNNNNNAGG 1 cut(s) 375
BstF5I GGATG 7 cut(s) 147, 172, 355, 782, 989, 1324, 1571
BstMAI GTCTC 4 cut(s) 1099, 1431, 1595, 1864
BstMCI CGRYCG 1 cut(s) 121
BstNI CCWGG 6 cut(s) 125, 396, 668, 1522, 1767, 2163
BstNSI RCATGY 5 cut(s) 500, 767, 818, 1236, 1970
BstSCI CCNGG 7 cut(s) 123, 394, 666, 1173, 1520, 1765, 2161
BstSFI CTRYAG 7 cut(s) 322, 884, 1149, 1458, 1706, 1941, 2102
BstV1I GCAGC 8 cut(s) 73, 407, 870, 892, 898, 1264, 1444, 1870
BstV2I GAAGAC 2 cut(s) 324, 837
BstX2I RGATCY 3 cut(s) 61, 1093, 1668
BstXI CCANNNNNNTGG 2 cut(s) 674, 1014
BstYI RGATCY 3 cut(s) 61, 1093, 1668
BsuI GTATCC 2 cut(s) 858, 969
BsuRI GGCC 6 cut(s) 9, 312, 394, 460, 1306, 1439
BtgZI GCGATG 1 cut(s) 1399
BtsCI GGATG 7 cut(s) 147, 172, 355, 782, 989, 1324, 1571
BtsI GCAGTG 2 cut(s) 787, 2099
BtsIMutI CAGTG 2 cut(s) 787, 2099
BveI ACCTGC 1 cut(s) 1852
Cac8I GCNNGC 7 cut(s) 211, 260, 372, 392, 1206, 1902, 1979
CciI TCATGA 1 cut(s) 754
Cfr13I GGNCC 5 cut(s) 7, 311, 680, 1304, 1585
CseI GACGC 1 cut(s) 392
Csp6I GTAC 2 cut(s) 1293, 1750
CviQI GTAC 2 cut(s) 1293, 1750
DdeI CTNAG 6 cut(s) 704, 859, 1273, 1560, 1622, 2089
DraI TTTAAA 1 cut(s) 1227
EaeI YGGCCR 2 cut(s) 458, 1437
Eam1104I CTCTTC 3 cut(s) 230, 1323, 1434
EarI CTCTTC 3 cut(s) 230, 1323, 1434
Eco130I CCWWGG 1 cut(s) 1089
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 517
Eco31I GGTCTC 2 cut(s) 1431, 1864
Eco32I GATATC 1 cut(s) 1048
Eco47I GGWCC 2 cut(s) 680, 1585
Eco57I CTGAAG 2 cut(s) 264, 336
Eco88I CYCGRG 1 cut(s) 159
EcoNI CCTNNNNNAGG 1 cut(s) 375
EcoO109I RGGNCCY 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 1080
EcoRII CCWGG 6 cut(s) 123, 394, 666, 1520, 1765, 2161
EcoRV GATATC 1 cut(s) 1048
EcoT14I CCWWGG 1 cut(s) 1089
EcoT22I ATGCAT 1 cut(s) 1190
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 1089
FalI AAGNNNNNCTT 4 cut(s) 947, 979, 1147, 1179
FaqI GGGAC 2 cut(s) 57, 1640
FauI CCCGC 1 cut(s) 1982
FbaI TGATCA 2 cut(s) 1351, 1951
FblI GTMKAC 1 cut(s) 968
Fnu4HI GCNGC 9 cut(s) 87, 401, 421, 881, 884, 887, 1253, 1458, 1884
FokI GGATG 7 cut(s) 134, 179, 362, 789, 976, 1331, 1558
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 9 cut(s) 87, 401, 421, 881, 884, 887, 1253, 1458, 1884
FspBI CTAG 3 cut(s) 27, 357, 1673
GluI GCNGC 9 cut(s) 87, 401, 421, 881, 884, 887, 1253, 1458, 1884
GsaI CCCAGC 1 cut(s) 1811
HaeIII GGCC 6 cut(s) 9, 312, 394, 460, 1306, 1439
HapII CCGG 2 cut(s) 53, 1174
HgaI GACGC 1 cut(s) 392
Hin1I GRCGYC 1 cut(s) 403
HincII GTYRAC 2 cut(s) 969, 1534
HindII GTYRAC 2 cut(s) 969, 1534
HindIII AAGCTT 1 cut(s) 1493
HinfI GANTC 7 cut(s) 185, 224, 335, 542, 706, 739, 1466
HpaII CCGG 2 cut(s) 53, 1174
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 3 cut(s) 969, 1534, 1752
Hpy188I TCNGA 7 cut(s) 583, 705, 847, 1623, 1735, 1774, 2025
Hpy8I GTNNAC 3 cut(s) 969, 1534, 1752
Hpy99I CGWCG 1 cut(s) 1804
HpyAV CCTTC 6 cut(s) 107, 172, 239, 1143, 1806, 1925
HpyCH4III ACNGT 3 cut(s) 439, 692, 1710
HpyCH4IV ACGT 1 cut(s) 1197
HpyF3I CTNAG 6 cut(s) 704, 859, 1273, 1560, 1622, 2089
HpySE526I ACGT 1 cut(s) 1197
Hsp92I GRCGYC 1 cut(s) 403
Ksp22I TGATCA 2 cut(s) 1351, 1951
LmnI GCTCC 7 cut(s) 249, 387, 512, 574, 586, 670, 900
Lsp1109I GCAGC 8 cut(s) 73, 407, 870, 892, 898, 1264, 1444, 1870
LweI GCATC 8 cut(s) 383, 658, 767, 882, 1102, 1197, 1309, 1794
MaeI CTAG 3 cut(s) 27, 357, 1673
MaeII ACGT 1 cut(s) 1197
MaeIII GTNAC 5 cut(s) 404, 722, 1065, 2095, 2174
MflI RGATCY 3 cut(s) 61, 1093, 1668
MhlI GDGCHC 1 cut(s) 517
MlsI TGGCCA 1 cut(s) 1439
MluNI TGGCCA 1 cut(s) 1439
MlyI GAGTC 3 cut(s) 233, 715, 1475
MmeI TCCRAC 2 cut(s) 601, 1563
Mox20I TGGCCA 1 cut(s) 1439
Mph1103I ATGCAT 1 cut(s) 1190
MroXI GAANNNNTTC 2 cut(s) 1080, 1332
MscI TGGCCA 1 cut(s) 1439
MseI TTAA 9 cut(s) 45, 687, 840, 1226, 1266, 1377, 1478, 1541, 1640
MslI CAYNNNNRTG 2 cut(s) 768, 1835
Msp20I TGGCCA 1 cut(s) 1439
MspA1I CMGCKG 2 cut(s) 883, 2093
MspI CCGG 2 cut(s) 53, 1174
MspR9I CCNGG 7 cut(s) 125, 396, 668, 1175, 1522, 1767, 2163
Mva1269I GAATGC 2 cut(s) 1459, 2057
MvaI CCWGG 6 cut(s) 125, 396, 668, 1522, 1767, 2163
NciI CCSGG 1 cut(s) 1175
NlaIV GGNNCC 4 cut(s) 514, 682, 1095, 1763
NmeAIII GCCGAG 2 cut(s) 288, 1014
NmuCI GTSAC 2 cut(s) 404, 2095
NsiI ATGCAT 1 cut(s) 1190
NspI RCATGY 5 cut(s) 500, 767, 818, 1236, 1970
NspV TTCGAA 1 cut(s) 1084
PaeR7I CTCGAG 1 cut(s) 159
PagI TCATGA 1 cut(s) 754
PceI AGGCCT 1 cut(s) 394
PciI ACATGT 1 cut(s) 496
PctI GAATGC 2 cut(s) 1459, 2057
PdmI GAANNNNTTC 2 cut(s) 1080, 1332
PfeI GAWTC 4 cut(s) 185, 335, 542, 739
PflMI CCANNNNNTGG 3 cut(s) 22, 1650, 2168
PfoI TCCNGGA 1 cut(s) 666
PkrI GCNGC 9 cut(s) 88, 402, 422, 882, 885, 888, 1254, 1459, 1885
PleI GAGTC 3 cut(s) 232, 714, 1474
PpsI GAGTC 3 cut(s) 232, 714, 1474
PpuMI RGGWCCY 1 cut(s) 680
PscI ACATGT 1 cut(s) 496
Psp5II RGGWCCY 1 cut(s) 680
Psp6I CCWGG 6 cut(s) 123, 394, 666, 1520, 1765, 2161
PspFI CCCAGC 1 cut(s) 1807
PspGI CCWGG 6 cut(s) 123, 394, 666, 1520, 1765, 2161
PspN4I GGNNCC 4 cut(s) 514, 682, 1095, 1763
PspPI GGNCC 5 cut(s) 7, 311, 680, 1304, 1585
PspPPI RGGWCCY 1 cut(s) 680
PspXI VCTCGAGB 1 cut(s) 159
PstI CTGCAG 3 cut(s) 888, 1462, 2106
PsuI RGATCY 3 cut(s) 61, 1093, 1668
PvuII CAGCTG 2 cut(s) 883, 2093
RsaI GTAC 2 cut(s) 1294, 1751
RsaNI GTAC 2 cut(s) 1293, 1750
RseI CAYNNNNRTG 2 cut(s) 768, 1835
SalI GTCGAC 1 cut(s) 967
SaqAI TTAA 9 cut(s) 45, 687, 840, 1226, 1266, 1377, 1478, 1541, 1640
SatI GCNGC 9 cut(s) 87, 401, 421, 881, 884, 887, 1253, 1458, 1884
Sau96I GGNCC 5 cut(s) 7, 311, 680, 1304, 1585
SchI GAGTC 3 cut(s) 233, 715, 1475
ScrFI CCNGG 7 cut(s) 125, 396, 668, 1175, 1522, 1767, 2163
SduI GDGCHC 1 cut(s) 517
SfaNI GCATC 8 cut(s) 383, 658, 767, 882, 1102, 1197, 1309, 1794
SfcI CTRYAG 7 cut(s) 322, 884, 1149, 1458, 1706, 1941, 2102
Sfr274I CTCGAG 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 1084
SinI GGWCC 2 cut(s) 680, 1585
SlaI CTCGAG 1 cut(s) 159
SmiMI CAYNNNNRTG 2 cut(s) 768, 1835
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 4 cut(s) 117, 217, 400, 1975
SspI AATATT 1 cut(s) 1511
SspMI CTAG 3 cut(s) 27, 357, 1673
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 7 cut(s) 123, 394, 666, 1173, 1520, 1765, 2161
StyI CCWWGG 1 cut(s) 1089
TaaI ACNGT 3 cut(s) 439, 692, 1710
TaiI ACGT 1 cut(s) 1200
TaqI TCGA 6 cut(s) 160, 270, 968, 984, 1084, 1802
TatI WGTACW 1 cut(s) 1292
TauI GCSGC 1 cut(s) 403
TfiI GAWTC 4 cut(s) 185, 335, 542, 739
Tru1I TTAA 9 cut(s) 45, 687, 840, 1226, 1266, 1377, 1478, 1541, 1640
Tru9I TTAA 9 cut(s) 45, 687, 840, 1226, 1266, 1377, 1478, 1541, 1640
TscAI CASTG 2 cut(s) 787, 2106
TseFI GTSAC 2 cut(s) 404, 2095
TseI GCWGC 8 cut(s) 86, 420, 880, 883, 886, 1252, 1457, 1883
Tsp45I GTSAC 2 cut(s) 404, 2095
TspDTI ATGAA 3 cut(s) 17, 380, 2116
TspGWI ACGGA 1 cut(s) 918
TspRI CASTG 2 cut(s) 787, 2106
Van91I CCANNNNNTGG 3 cut(s) 22, 1650, 2168
VpaK11BI GGWCC 2 cut(s) 680, 1585
XagI CCTNNNNNAGG 1 cut(s) 375
XapI RAATTY 4 cut(s) 77, 576, 1080, 1775
XceI RCATGY 5 cut(s) 500, 767, 818, 1236, 1970
XcmI CCANNNNNNNNNTGG 2 cut(s) 935, 1058
XhoI CTCGAG 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 968
XmnI GAANNNNTTC 2 cut(s) 1080, 1332
XspI CTAG 3 cut(s) 27, 357, 1673
Zsp2I ATGCAT 1 cut(s) 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.