Rorug06G0397900

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016270
Physical Location & Seq
Forward (+)
54354648 .. 54354956
309 bp
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UTR
Exon/CDS
Intron
Rorug06G0397900.1

Sequence Viewer

Length: 309 bp
ATGGCAATGGAGCTAACAGCAGAGGAGGTGAGACAGTACAACGGCTCAGACCCATCGAAGCCGATATACGTGGCAGTGAAGAGCCGCATCTTCGACGTGACCAACGGCAAGTCGTTTTACGGTCCTGGAGGTCCCTACGCCATGTTCGCAGGCAAGGACGCCAGCCGAGCTCTGGCCAAGATGACCAAGAACGAAGAAGACATCACCGCCGACCTCCAAGGCCTCTCCGACAAGGAGATCGGCGTCCTCACCGACTGGGAGAACAAGTTCGAGGCTAAGTACCCCATTGTTGGCCGTGTTGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MULE SWIM

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

5.11

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 6 - 72 5.7e-13 Cytochrome b5-like Heme/Steroid binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30231 FvH4_2g30231
malus_domestica MD08G1135300.v1.1
prunus_persica Prupe.1G465300_v2.0.a1
pyrus_communis pycom08g11430
rosa_chinensis RchiOBHm_Chr6g0312571 RchiOBHm_Chr6g0312641
rosa_laevigata RLG00000010308
rosa_multiflora Rmu_sc0002859.1_g000006 Rmu_ssc0000412.1_g000004
rosa_roxburghii Rroxscaffold_7G00156620
rosa_rugosa Rorug06G0397900
rosa_samantha Rh6AG515200 Rh6CG530100
rosa_wichuraiana Rw6G044770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 85, 207
AcoI YGGCCR 2 cut(s) 174, 292
AcyI GRCGYC 2 cut(s) 159, 243
AfaI GTAC 2 cut(s) 38, 281
AfiI CCNNNNNNNGG 2 cut(s) 172, 290
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 124
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 2 cut(s) 13, 170
AluI AGCT 2 cut(s) 13, 170
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 25
AoxI GGCC 3 cut(s) 174, 220, 292
Asp700I GAANNNNTTC 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 122, 131
AsuHPI GGTGA 3 cut(s) 40, 196, 241
AvaII GGWCC 2 cut(s) 122, 131
BalI TGGCCA 1 cut(s) 176
BanII GRGCYC 1 cut(s) 172
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 172
BccI CCATC 1 cut(s) 61
BceAI ACGGC 3 cut(s) 58, 121, 279
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 25
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 122, 131
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 122, 131
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 147
BsaAI YACGTR 1 cut(s) 70
BsaHI GRCGYC 2 cut(s) 159, 243
BsaJI CCNNGG 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 290
Bse1I ACTGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 172, 290
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 38
BshFI GGCC 3 cut(s) 176, 222, 294
BsiHKAI GWGCWC 1 cut(s) 172
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 172, 290
BsmAI GTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 3 cut(s) 176, 222, 294
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 2 cut(s) 85, 207
BspANI GGCC 3 cut(s) 176, 222, 294
BspCNI CTCAG 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 237
BssNI GRCGYC 2 cut(s) 159, 243
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 36, 122
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 2 cut(s) 159, 243
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 151, 163
BstDEI CTNAG 2 cut(s) 46, 276
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 146, 167
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 204
BsuRI GGCC 3 cut(s) 176, 222, 294
BtrI CACGTC 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 151, 163
Cfr13I GGNCC 2 cut(s) 122, 131
CseI GACGC 2 cut(s) 167, 232
Csp6I GTAC 2 cut(s) 37, 280
CviAII CATG 1 cut(s) 142
CviQI GTAC 2 cut(s) 37, 280
DdeI CTNAG 2 cut(s) 46, 276
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 2 cut(s) 174, 292
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Ecl136II GAGCTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 122, 131
Eco53kI GAGCTC 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 145
FaiI YATR 2 cut(s) 67, 143
FaqI GGGAC 1 cut(s) 117
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 3 cut(s) 176, 222, 294
HgaI GACGC 2 cut(s) 167, 232
Hin1I GRCGYC 2 cut(s) 159, 243
Hin1II CATG 1 cut(s) 145
HphI GGTGA 3 cut(s) 40, 196, 241
Hpy188I TCNGA 2 cut(s) 49, 229
Hpy188III TCNNGA 1 cut(s) 306
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 36, 122
HpyCH4IV ACGT 2 cut(s) 69, 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 167
HpyF3I CTNAG 2 cut(s) 46, 276
HpySE526I ACGT 2 cut(s) 69, 96
Hsp92I GRCGYC 2 cut(s) 159, 243
Hsp92II CATG 1 cut(s) 145
Kzo9I GATC 1 cut(s) 237
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 6 cut(s) 111, 135, 138, 158, 175, 241
LweI GCATC 1 cut(s) 96
MaeII ACGT 2 cut(s) 69, 96
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 4 cut(s) 82, 91, 206, 209
MhlI GDGCHC 1 cut(s) 172
MlsI TGGCCA 1 cut(s) 176
MluNI TGGCCA 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 7 cut(s) 16, 19, 122, 224, 233, 257, 265
Mox20I TGGCCA 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 266
MscI TGGCCA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 146, 167
NdeII GATC 1 cut(s) 237
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 1 cut(s) 133
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 97
PceI AGGCCT 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 266
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 122, 131
PspPPI RGGWCCY 1 cut(s) 131
RsaI GTAC 2 cut(s) 38, 281
RsaNI GTAC 2 cut(s) 37, 280
SacI GAGCTC 1 cut(s) 172
SapI GCTCTTC 1 cut(s) 74
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 2 cut(s) 122, 131
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 172
SetI ASST 7 cut(s) 15, 30, 72, 99, 133, 172, 216
SfaNI GCATC 1 cut(s) 96
SinI GGWCC 2 cut(s) 122, 131
SseBI AGGCCT 1 cut(s) 222
SsiI CCGC 2 cut(s) 85, 207
SstI GAGCTC 1 cut(s) 172
StuI AGGCCT 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 2 cut(s) 36, 122
TaiI ACGT 2 cut(s) 72, 99
TaqI TCGA 3 cut(s) 56, 93, 270
TatI WGTACW 1 cut(s) 36
TauI GCSGC 1 cut(s) 87
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 2 cut(s) 122, 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.