RchiOBHm_Chr7g0195891

Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018099
Physical Location & Seq
Forward (+)
13755744 .. 13757733
1990 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17519

Sequence Viewer

Length: 978 bp
ATGGAGAGCTCTAGCATGGAAGCAGAAGCTTTGGAGATATTTGAGGTTGGTCCTTGTGAAGATGCTTACACAATGGGCTACATGATAGGCCAGAGGTTTTCAAACAAGATAAAGAGCAGGTTGGCCAGAGACCTCATTCTTCAAGACCAGCTCCTCCCTTTTGCTCAGACCCCAGAGTCACAGCCACTCATTCAGTCTCTTACTGAAAATCACCGGAGCAAGTTTCCAAGGTATTGGGACGAGCTCGTAGGAACTGCAGAGGGAAGTGGTGTGCCAGTTCTTGAAATAATGATGATCAACTTTAGGAAGGAGATTCTTCCATTTCTTCCAAAGACGGTGATGAATTGCAAAATAGATACCCCGGATGACTGCTCTGATGTTCTTGTTGCTAGCGATTCCATGGCAATTGTGGCTCACAATGAGGATGCAAATGTTGCTCTGGTTGGCCATACCTATTTGGTAAAAGGAACTCTGTCAAATGGGATATCATTCATTGCTTATACATATGCCGGAGAGCTCCCTAGCTGTGCATTCGGCATCAACAGTCATGGTCTGGCATTTACGTTGAATTCGGTACCCCCATCTGAAAGTGAGATTGTTCCTGGAGGCATTGGGCGGAACTTTATTTCACGAGACCTGCTTGAAGCAAAGAGCATTATTGATGCATTATGTAGAATTGAATCAGCAGAAGTTTCTGCAGGACATAGTTACAATCTGATTGAGACAAGGACACGAAGAATTATCAATGTAGAAACTGCATCAAAGAACCGGGTTTCAGTTTATGAGGTTGGAGAAACACCATTCTTCCATGCAAACATGTATCTTCATCTCCAGGTTAATCAGGTACATGATGAAAATTCATTAACAAGGCAAAGGAAAGCAACTATGCTACCTAAAGGCTCCAAAGAAGATGTCCTGTCACTTCTAGGAGATACAGACGAGCCAACATACCCCATCTACATGACAGGTGTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAT

Protein Analysis

325

Amino Acids

36.02

Weight (kDa)

4.97

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAT PF03417 132 - 320 2.9e-22 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018099)

Species Orthologous Gene IDs
malus_domestica MD14G1117300.v1.1
prunus_persica Prupe.5G112000_v2.0.a1 Prupe.5G112000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195891
rosa_laevigata RLG00000004082
rosa_multiflora Rmu_sc0004016.1_g000008
rosa_roxburghii Rroxscaffold_3G00260020
rosa_rugosa Rorug07G0027100
rosa_samantha Rh7AG154800 Rh7CG160300
rosa_wichuraiana Rw7G013230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 175
Acc36I ACCTGC 2 cut(s) 108, 645
Acc65I GGTACC 1 cut(s) 574
AccB1I GGYRCC 1 cut(s) 574
AciI CCGC 1 cut(s) 616
AcoI YGGCCR 2 cut(s) 123, 445
AcsI RAATTY 2 cut(s) 568, 856
AfaI GTAC 2 cut(s) 576, 846
AflIII ACRYGT 1 cut(s) 816
AgsI TTSAA 6 cut(s) 102, 143, 284, 568, 644, 680
AjnI CCWGG 2 cut(s) 601, 831
AluBI AGCT 6 cut(s) 9, 29, 151, 244, 517, 525
AluI AGCT 6 cut(s) 9, 29, 151, 244, 517, 525
Alw21I GWGCWC 3 cut(s) 11, 246, 519
Alw26I GTCTC 4 cut(s) 123, 201, 627, 716
AoxI GGCC 3 cut(s) 88, 123, 445
ApoI RAATTY 2 cut(s) 568, 856
ArsI GACNNNNNNTTYG 2 cut(s) 897, 929
Asp718I GGTACC 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 2 cut(s) 362, 770
AsuHPI GGTGA 2 cut(s) 203, 349
AsuNHI GCTAGC 1 cut(s) 389
AvaII GGWCC 1 cut(s) 50
BalI TGGCCA 2 cut(s) 125, 447
BanI GGYRCC 1 cut(s) 574
BanII GRGCYC 3 cut(s) 11, 246, 519
BauI CACGAG 1 cut(s) 630
Bbv12I GWGCWC 3 cut(s) 11, 246, 519
BccI CCATC 2 cut(s) 589, 962
BciT130I CCWGG 2 cut(s) 603, 833
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 2 cut(s) 362, 770
BcoDI GTCTC 4 cut(s) 123, 201, 627, 716
BfaI CTAG 4 cut(s) 12, 390, 522, 926
BfmI CTRYAG 2 cut(s) 255, 696
BfuAI ACCTGC 2 cut(s) 108, 645
Bme1390I CCNGG 4 cut(s) 362, 603, 770, 833
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 576, 901
BmrFI CCNGG 4 cut(s) 362, 603, 770, 833
BmsI GCATC 5 cut(s) 52, 415, 546, 652, 767
BmtI GCTAGC 1 cut(s) 393
BpmI CTGGAG 2 cut(s) 624, 815
BpuMI CCSGG 2 cut(s) 362, 770
BsaI GGTCTC 2 cut(s) 123, 627
BsaJI CCNNGG 3 cut(s) 227, 360, 399
BsaWI WCCGGW 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 2 cut(s) 603, 833
BseDI CCNNGG 3 cut(s) 227, 360, 399
BseGI GGATG 2 cut(s) 370, 430
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 143
BshFI GGCC 3 cut(s) 90, 125, 447
BshNI GGYRCC 1 cut(s) 574
BsiHKAI GWGCWC 3 cut(s) 11, 246, 519
BsiSI CCGG 4 cut(s) 214, 362, 510, 769
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 4 cut(s) 123, 201, 627, 716
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 530
BsnI GGCC 3 cut(s) 90, 125, 447
Bso31I GGTCTC 2 cut(s) 123, 627
Bsp1286I GDGCHC 3 cut(s) 11, 246, 519
Bsp143I GATC 1 cut(s) 294
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 1 cut(s) 616
BspANI GGCC 3 cut(s) 90, 125, 447
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 576, 901
BspMAI CTGCAG 2 cut(s) 259, 700
BspMI ACCTGC 2 cut(s) 108, 645
BspOI GCTAGC 1 cut(s) 393
BspT107I GGYRCC 1 cut(s) 574
BspTNI GGTCTC 2 cut(s) 123, 627
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 227, 360, 399
BssMI GATC 1 cut(s) 294
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 2 cut(s) 227, 399
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 603, 833
Bst4CI ACNGT 2 cut(s) 337, 545
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 370, 430
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 4 cut(s) 123, 201, 627, 716
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 410, 434
BstNI CCWGG 2 cut(s) 603, 833
BstNSI RCATGY 1 cut(s) 820
BstSCI CCNGG 4 cut(s) 360, 601, 768, 831
BstSFI CTRYAG 2 cut(s) 255, 696
BstXI CCANNNNNNTGG 1 cut(s) 234
BsuRI GGCC 3 cut(s) 90, 125, 447
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 2 cut(s) 370, 430
BveI ACCTGC 2 cut(s) 108, 645
Cac8I GCNNGC 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 575, 845
CviAII CATG 8 cut(s) 16, 82, 400, 548, 809, 817, 848, 961
CviQI GTAC 2 cut(s) 575, 845
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
DrdI GACNNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 123, 445
EciI GGCGGA 1 cut(s) 631
Ecl136II GAGCTC 3 cut(s) 9, 244, 517
Eco130I CCWWGG 2 cut(s) 227, 399
Eco24I GRGCYC 3 cut(s) 11, 246, 519
Eco31I GGTCTC 2 cut(s) 123, 627
Eco32I GATATC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 3 cut(s) 9, 244, 517
EcoICRI GAGCTC 3 cut(s) 9, 244, 517
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 2 cut(s) 601, 831
EcoRV GATATC 1 cut(s) 486
EcoT14I CCWWGG 2 cut(s) 227, 399
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 3 cut(s) 11, 246, 519
ErhI CCWWGG 2 cut(s) 227, 399
FaeI CATG 8 cut(s) 19, 85, 403, 551, 812, 820, 851, 964
FaqI GGGAC 1 cut(s) 251
FatI CATG 8 cut(s) 15, 81, 399, 547, 808, 816, 847, 960
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 294
FokI GGATG 2 cut(s) 377, 437
FriOI GRGCYC 3 cut(s) 11, 246, 519
FspBI CTAG 4 cut(s) 12, 390, 522, 926
GsuI CTGGAG 2 cut(s) 624, 815
HaeIII GGCC 3 cut(s) 90, 125, 447
HapII CCGG 4 cut(s) 214, 362, 510, 769
Hin1II CATG 8 cut(s) 19, 85, 403, 551, 812, 820, 851, 964
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 4 cut(s) 176, 313, 395, 680
HpaII CCGG 4 cut(s) 214, 362, 510, 769
HphI GGTGA 2 cut(s) 203, 349
Hpy188I TCNGA 4 cut(s) 168, 376, 586, 717
Hpy188III TCNNGA 3 cut(s) 143, 281, 630
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 2 cut(s) 337, 545
HpyCH4IV ACGT 1 cut(s) 563
HpyCH4V TGCA 8 cut(s) 257, 348, 428, 530, 665, 698, 758, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 434
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 563
Hsp92II CATG 8 cut(s) 19, 85, 403, 551, 812, 820, 851, 964
KpnI GGTACC 1 cut(s) 578
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 4 cut(s) 156, 216, 522, 905
LweI GCATC 5 cut(s) 52, 415, 546, 652, 767
MaeI CTAG 4 cut(s) 12, 390, 522, 926
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 3 cut(s) 177, 707, 918
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 8 cut(s) 71, 131, 308, 317, 747, 796, 815, 920
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 3 cut(s) 11, 246, 519
MlsI TGGCCA 2 cut(s) 125, 447
MluCI AATT 6 cut(s) 343, 405, 568, 675, 738, 856
MluNI TGGCCA 2 cut(s) 125, 447
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 769
MnlI CCTC 8 cut(s) 37, 87, 143, 164, 253, 415, 599, 778
Mox20I TGGCCA 2 cut(s) 125, 447
Mph1103I ATGCAT 1 cut(s) 667
MscI TGGCCA 2 cut(s) 125, 447
MseI TTAA 2 cut(s) 837, 863
MslI CAYNNNNRTG 1 cut(s) 959
Msp20I TGGCCA 2 cut(s) 125, 447
MspI CCGG 4 cut(s) 214, 362, 510, 769
MspR9I CCNGG 4 cut(s) 362, 603, 770, 833
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 530
MvaI CCWGG 2 cut(s) 603, 833
MwoI GCNNNNNNNGC 2 cut(s) 410, 434
NciI CCSGG 2 cut(s) 362, 770
NcoI CCATGG 1 cut(s) 399
NdeI CATATG 1 cut(s) 505
NdeII GATC 1 cut(s) 294
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 8 cut(s) 19, 85, 403, 551, 812, 820, 851, 964
NlaIV GGNNCC 2 cut(s) 576, 901
NmuCI GTSAC 2 cut(s) 177, 918
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 1 cut(s) 820
PciI ACATGT 1 cut(s) 816
PctI GAATGC 1 cut(s) 530
PfeI GAWTC 3 cut(s) 313, 395, 680
PfoI TCCNGGA 1 cut(s) 601
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PscI ACATGT 1 cut(s) 816
Psp124BI GAGCTC 3 cut(s) 11, 246, 519
Psp6I CCWGG 2 cut(s) 601, 831
PspGI CCWGG 2 cut(s) 601, 831
PspN4I GGNNCC 2 cut(s) 576, 901
PspPI GGNCC 1 cut(s) 50
PstI CTGCAG 2 cut(s) 259, 700
RsaI GTAC 2 cut(s) 576, 846
RsaNI GTAC 2 cut(s) 575, 845
RseI CAYNNNNRTG 1 cut(s) 959
SacI GAGCTC 3 cut(s) 11, 246, 519
SaqAI TTAA 2 cut(s) 837, 863
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 4 cut(s) 362, 603, 770, 833
SduI GDGCHC 3 cut(s) 11, 246, 519
SfaNI GCATC 5 cut(s) 52, 415, 546, 652, 767
SfcI CTRYAG 2 cut(s) 255, 696
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 959
Sse9I AATT 6 cut(s) 343, 405, 568, 675, 738, 856
SsiI CCGC 1 cut(s) 616
SspMI CTAG 4 cut(s) 12, 390, 522, 926
SstI GAGCTC 3 cut(s) 11, 246, 519
StyD4I CCNGG 4 cut(s) 360, 601, 768, 831
StyI CCWWGG 2 cut(s) 227, 399
TaaI ACNGT 2 cut(s) 337, 545
TaiI ACGT 1 cut(s) 566
TasI AATT 6 cut(s) 343, 405, 568, 675, 738, 856
TfiI GAWTC 3 cut(s) 313, 395, 680
Tru1I TTAA 2 cut(s) 837, 863
Tru9I TTAA 2 cut(s) 837, 863
TseFI GTSAC 2 cut(s) 177, 918
Tsp45I GTSAC 2 cut(s) 177, 918
TspDTI ATGAA 5 cut(s) 356, 481, 815, 849, 867
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 2 cut(s) 568, 856
XceI RCATGY 1 cut(s) 820
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XspI CTAG 4 cut(s) 12, 390, 522, 926
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.