Rh7CG160300

Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018099
Physical Location & Seq
Forward (+)
13192486 .. 13194464
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG160300.1

Sequence Viewer

Length: 1089 bp
ATGGAAGCAGAAGCTTTGGAGATATTTGAGGTTGGTCCTTGTGAAGATGCTTACACAATGGGCTACATGATAGGCCAGAGGTTTTCAAACAAGATAAAGAGCAGGTTGGCCAGAGACCTCATTCTTCAAGACCAGCTCCTCCCTTTTGCTCAGACCCCAGAGTCACAGCCACTCATTCAGTCTCTTACTGAAAATCACCGGAGCAAGTTTCCAAGGTATTGGGACGAGCTCGTAGGAACTGCAGAGGGAAGTGGTGTGCCAGTTCTTGAAATAATGCTGATCAACTTTAGGAAGGAGATTCTTCCATTTCTTCCAAAGACGGTGATGAATTGCAAAATAGATACCCCGGATGACTGCTCTGATGTTCTTGTTGCTAGTGATTCCATGGCAATTGTGGCTCACAATGAGGATGCAAATGTTGCTCTGGTTGGCCATACCTATTTGGTAAAAGGAACTCTGTCATATGGGATATCATTCATTGCTTATACATATGCCGGAGAGCTCCCTAGCTGTGCATTCGGCCTCAACAGTCATGGTCTGGCATTTACGTTGAATTCGGTACCCCCATCTGAAAGTGAGATTGTTCCTGGAGGCATTGGGCGAAACTTTATTTCACGAGACCTGCTTGAAGCAAAGAGCATTATTGATGCATTATGTAGAATTGAATCAGCAGAAGTTTCTGCAGGACATAGTTACAATCTGATTGAGACAAGGAAACGAAGAATTATCAATGTAGAAACTGCATCAAAGAACCGAGTTTCAGTTTATGAGGTTGGAGAAACACCATTCTTCCATGCAAACATGTATCTTCATCTCCAGGTTAATCAGGTACATGATGAAAATTCATTAACAAGACAAAGGAAAGCAACTATGCTACCTAAAGGCTCCAAAGAAGATGTCCTGTCACTTCTAGGAGATACAGACGAGCCAACATACCCCATCTACATGACAGGTCCAACGCTTTACACTCTATGCACAGCAGTGATAGACCTCGACGAACAAACCCTATCAATTGTTGAAGGAAACCCGAAAAAAGGAGAAATCTCTCACATCTTCTCTACGTGTTCAGAAGATTTCAAGATGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAT

Protein Analysis

362

Amino Acids

40.15

Weight (kDa)

4.97

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAT PF03417 127 - 344 5e-26 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018099)

Species Orthologous Gene IDs
malus_domestica MD14G1117300.v1.1
prunus_persica Prupe.5G112000_v2.0.a1 Prupe.5G112000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195891
rosa_laevigata RLG00000004082
rosa_multiflora Rmu_sc0004016.1_g000008
rosa_roxburghii Rroxscaffold_3G00260020
rosa_rugosa Rorug07G0027100
rosa_samantha Rh7AG154800 Rh7CG160300
rosa_wichuraiana Rw7G013230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
Acc36I ACCTGC 2 cut(s) 93, 630
Acc65I GGTACC 1 cut(s) 559
AccB1I GGYRCC 1 cut(s) 559
AcoI YGGCCR 2 cut(s) 108, 430
AcsI RAATTY 2 cut(s) 553, 841
AfaI GTAC 2 cut(s) 561, 831
AfiI CCNNNNNNNGG 1 cut(s) 1034
AflIII ACRYGT 2 cut(s) 801, 1061
AgsI TTSAA 8 cut(s) 87, 128, 269, 553, 629, 665, 1019, 1078
AjnI CCWGG 2 cut(s) 586, 816
AleI CACNNNNGTG 1 cut(s) 980
AluBI AGCT 5 cut(s) 14, 136, 229, 502, 510
AluI AGCT 5 cut(s) 14, 136, 229, 502, 510
Alw21I GWGCWC 2 cut(s) 231, 504
Alw26I GTCTC 4 cut(s) 108, 186, 612, 701
AoxI GGCC 4 cut(s) 73, 108, 430, 520
ApoI RAATTY 2 cut(s) 553, 841
ArsI GACNNNNNNTTYG 2 cut(s) 882, 914
Asp718I GGTACC 1 cut(s) 559
AspS9I GGNCC 2 cut(s) 35, 953
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 188, 334
AvaII GGWCC 2 cut(s) 35, 953
BalI TGGCCA 2 cut(s) 110, 432
BanI GGYRCC 1 cut(s) 559
BanII GRGCYC 2 cut(s) 231, 504
BauI CACGAG 1 cut(s) 615
Bbv12I GWGCWC 2 cut(s) 231, 504
BccI CCATC 2 cut(s) 574, 947
BceAI ACGGC 1 cut(s) 1069
BciT130I CCWGG 2 cut(s) 588, 818
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 4 cut(s) 108, 186, 612, 701
BfaI CTAG 3 cut(s) 375, 507, 911
BfmI CTRYAG 2 cut(s) 240, 681
BfuAI ACCTGC 2 cut(s) 93, 630
Bme1390I CCNGG 3 cut(s) 347, 588, 818
Bme18I GGWCC 2 cut(s) 35, 953
BmgT120I GGNCC 2 cut(s) 35, 953
BmiI GGNNCC 2 cut(s) 561, 886
BmrFI CCNGG 3 cut(s) 347, 588, 818
BmsI GCATC 5 cut(s) 37, 400, 637, 752, 1071
BpmI CTGGAG 2 cut(s) 609, 800
BpuMI CCSGG 1 cut(s) 347
BsaAI YACGTR 1 cut(s) 1062
BsaI GGTCTC 2 cut(s) 108, 612
BsaJI CCNNGG 3 cut(s) 212, 345, 384
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 1034
Bse1I ACTGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 477
BseBI CCWGG 2 cut(s) 588, 818
BseDI CCNNGG 3 cut(s) 212, 345, 384
BseGI GGATG 2 cut(s) 355, 415
BseLI CCNNNNNNNGG 1 cut(s) 1034
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 128
BshFI GGCC 4 cut(s) 75, 110, 432, 522
BshNI GGYRCC 1 cut(s) 559
BsiHKAI GWGCWC 2 cut(s) 231, 504
BsiSI CCGG 3 cut(s) 199, 347, 495
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 1034
BsmAI GTCTC 4 cut(s) 108, 186, 612, 701
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 515
BsnI GGCC 4 cut(s) 75, 110, 432, 522
Bso31I GGTCTC 2 cut(s) 108, 612
Bsp1286I GDGCHC 2 cut(s) 231, 504
Bsp143I GATC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 384
BspANI GGCC 4 cut(s) 75, 110, 432, 522
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 561, 886
BspMAI CTGCAG 2 cut(s) 244, 685
BspMI ACCTGC 2 cut(s) 93, 630
BspT107I GGYRCC 1 cut(s) 559
BspTNI GGTCTC 2 cut(s) 108, 612
BsrDI GCAATG 1 cut(s) 477
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 212, 345, 384
BssMI GATC 1 cut(s) 279
BssSI CACGAG 1 cut(s) 615
BssT1I CCWWGG 2 cut(s) 212, 384
Bst2BI CACGAG 1 cut(s) 615
Bst2UI CCWGG 2 cut(s) 588, 818
Bst4CI ACNGT 2 cut(s) 322, 530
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 1062
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 2 cut(s) 355, 415
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 4 cut(s) 108, 186, 612, 701
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 395, 419
BstNI CCWGG 2 cut(s) 588, 818
BstNSI RCATGY 1 cut(s) 805
BstSCI CCNGG 3 cut(s) 345, 586, 816
BstSFI CTRYAG 2 cut(s) 240, 681
BstXI CCANNNNNNTGG 1 cut(s) 219
BsuRI GGCC 4 cut(s) 75, 110, 432, 522
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 2 cut(s) 355, 415
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 1 cut(s) 987
BveI ACCTGC 2 cut(s) 93, 630
Cfr13I GGNCC 2 cut(s) 35, 953
Csp6I GTAC 2 cut(s) 560, 830
CviAII CATG 7 cut(s) 67, 385, 533, 794, 802, 833, 946
CviQI GTAC 2 cut(s) 560, 830
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 2 cut(s) 108, 430
Ecl136II GAGCTC 2 cut(s) 229, 502
Eco130I CCWWGG 2 cut(s) 212, 384
Eco24I GRGCYC 2 cut(s) 231, 504
Eco31I GGTCTC 2 cut(s) 108, 612
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 35, 953
Eco53kI GAGCTC 2 cut(s) 229, 502
EcoICRI GAGCTC 2 cut(s) 229, 502
EcoRI GAATTC 1 cut(s) 553
EcoRII CCWGG 2 cut(s) 586, 816
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 212, 384
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 2 cut(s) 231, 504
ErhI CCWWGG 2 cut(s) 212, 384
FaeI CATG 7 cut(s) 70, 388, 536, 797, 805, 836, 949
FaqI GGGAC 1 cut(s) 236
FatI CATG 7 cut(s) 66, 384, 532, 793, 801, 832, 945
FauNDI CATATG 2 cut(s) 463, 490
FbaI TGATCA 1 cut(s) 279
FokI GGATG 2 cut(s) 362, 422
FriOI GRGCYC 2 cut(s) 231, 504
FspBI CTAG 3 cut(s) 375, 507, 911
GsuI CTGGAG 2 cut(s) 609, 800
HaeIII GGCC 4 cut(s) 75, 110, 432, 522
HapII CCGG 3 cut(s) 199, 347, 495
Hin1II CATG 7 cut(s) 70, 388, 536, 797, 805, 836, 949
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 4 cut(s) 161, 298, 380, 665
HpaII CCGG 3 cut(s) 199, 347, 495
HphI GGTGA 2 cut(s) 188, 334
Hpy188I TCNGA 5 cut(s) 153, 361, 571, 702, 1069
Hpy188III TCNNGA 4 cut(s) 128, 266, 615, 1078
Hpy99I CGWCG 1 cut(s) 998
HpyAV CCTTC 2 cut(s) 286, 1013
HpyCH4III ACNGT 2 cut(s) 322, 530
HpyCH4IV ACGT 2 cut(s) 548, 1061
HpyCH4V TGCA 9 cut(s) 242, 333, 413, 515, 650, 683, 743, 797, 975
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 419
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 2 cut(s) 548, 1061
Hsp92II CATG 7 cut(s) 70, 388, 536, 797, 805, 836, 949
KpnI GGTACC 1 cut(s) 563
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 1 cut(s) 279
LmnI GCTCC 4 cut(s) 141, 201, 507, 890
LweI GCATC 5 cut(s) 37, 400, 637, 752, 1071
MaeI CTAG 3 cut(s) 375, 507, 911
MaeII ACGT 2 cut(s) 548, 1061
MaeIII GTNAC 3 cut(s) 162, 692, 903
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MfeI CAATTG 2 cut(s) 390, 1011
MhlI GDGCHC 2 cut(s) 231, 504
MlsI TGGCCA 2 cut(s) 110, 432
MluCI AATT 7 cut(s) 328, 390, 553, 660, 723, 841, 1011
MluNI TGGCCA 2 cut(s) 110, 432
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 754, 980
Mox20I TGGCCA 2 cut(s) 110, 432
Mph1103I ATGCAT 1 cut(s) 652
MscI TGGCCA 2 cut(s) 110, 432
MseI TTAA 2 cut(s) 822, 848
MslI CAYNNNNRTG 2 cut(s) 944, 980
Msp20I TGGCCA 2 cut(s) 110, 432
MspI CCGG 3 cut(s) 199, 347, 495
MspR9I CCNGG 3 cut(s) 347, 588, 818
MunI CAATTG 2 cut(s) 390, 1011
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 2 cut(s) 588, 818
MwoI GCNNNNNNNGC 2 cut(s) 395, 419
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 384
NdeI CATATG 2 cut(s) 463, 490
NdeII GATC 1 cut(s) 279
NlaIII CATG 7 cut(s) 70, 388, 536, 797, 805, 836, 949
NlaIV GGNNCC 2 cut(s) 561, 886
NmuCI GTSAC 2 cut(s) 162, 903
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 1 cut(s) 805
OliI CACNNNNGTG 1 cut(s) 980
PciI ACATGT 1 cut(s) 801
PctI GAATGC 1 cut(s) 515
PfeI GAWTC 3 cut(s) 298, 380, 665
PfoI TCCNGGA 1 cut(s) 586
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 1062
PscI ACATGT 1 cut(s) 801
Psp124BI GAGCTC 2 cut(s) 231, 504
Psp6I CCWGG 2 cut(s) 586, 816
PspGI CCWGG 2 cut(s) 586, 816
PspN4I GGNNCC 2 cut(s) 561, 886
PspPI GGNCC 2 cut(s) 35, 953
PstI CTGCAG 2 cut(s) 244, 685
RsaI GTAC 2 cut(s) 561, 831
RsaNI GTAC 2 cut(s) 560, 830
RseI CAYNNNNRTG 2 cut(s) 944, 980
SacI GAGCTC 2 cut(s) 231, 504
SaqAI TTAA 2 cut(s) 822, 848
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 2 cut(s) 35, 953
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 347, 588, 818
SduI GDGCHC 2 cut(s) 231, 504
SfaNI GCATC 5 cut(s) 37, 400, 637, 752, 1071
SfcI CTRYAG 2 cut(s) 240, 681
SinI GGWCC 2 cut(s) 35, 953
SmiMI CAYNNNNRTG 2 cut(s) 944, 980
Sse9I AATT 7 cut(s) 328, 390, 553, 660, 723, 841, 1011
SspMI CTAG 3 cut(s) 375, 507, 911
SstI GAGCTC 2 cut(s) 231, 504
StyD4I CCNGG 3 cut(s) 345, 586, 816
StyI CCWWGG 2 cut(s) 212, 384
TaaI ACNGT 2 cut(s) 322, 530
TaiI ACGT 2 cut(s) 551, 1064
TaqI TCGA 1 cut(s) 993
TasI AATT 7 cut(s) 328, 390, 553, 660, 723, 841, 1011
TfiI GAWTC 3 cut(s) 298, 380, 665
Tru1I TTAA 2 cut(s) 822, 848
Tru9I TTAA 2 cut(s) 822, 848
TscAI CASTG 1 cut(s) 987
TseFI GTSAC 2 cut(s) 162, 903
Tsp45I GTSAC 2 cut(s) 162, 903
TspDTI ATGAA 5 cut(s) 341, 466, 800, 834, 852
TspRI CASTG 1 cut(s) 987
VpaK11BI GGWCC 2 cut(s) 35, 953
XapI RAATTY 2 cut(s) 553, 841
XceI RCATGY 1 cut(s) 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 3 cut(s) 375, 507, 911
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.