RchiOBHm_Chr7g0203381

Protein transport protein sec16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0021485
Physical Location & Seq
Reverse (-)
21083699 .. 21085458
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18203

Sequence Viewer

Length: 546 bp
ATGGGTATTAGATCCAGATATGTTGACACTTTCAACCAAGCTGGAGGAATGCCAGCAAACTTGTTCCAGTCACCTTCTGTTCCATCTACTAAGCCTGCTGTTGCTGCCAATGCAAAGTTTTTCATTCCCACTCCAGCGTTATCAGGTGACCAGACTATGGAGGCTATTGCAGAACATGTACAAGAAGATGCTACAACAACTAAAGAAGATCCTTCAACATCAGCCAGGAATGACTCTTTTCATGCTCCACCTTCATCATCACCAATGAGTATGCAAAGGTACCCAAGCATGAGTAATATCCAAAGCATGGGAGTTATGTCAAATGCCAATGGTCCCCTTCCAGCTCACTCACGAAGGACGGCATCATGGGGTGGGAGCTCCAATGATATATTTAGCCCTCCAAAGACGGGAGAAATAAAACCTCTAGGGGAGGCATTAGGCATGTCCCCTACTTTATATAGGCCTAGTGAGCCGCCTTCTCAAATGCATGCGCCAATGAATGGTGGCAGCAGTTTTGGTGACGATCTTCATGAAGTGGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec16 Sec16_C

Protein Analysis

181

Amino Acids

19.2

Weight (kDa)

5.44

Isoelectric Point (pI)

75.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021485)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0203381
rosa_laevigata RLG00000003531
rosa_multiflora Rmu_sc0003347.1_g000006 Rmu_sc0003347.1_g000017
rosa_samantha Rh7DG211900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 279
AccB7I CCANNNNNTGG 3 cut(s) 157, 307, 500
AciI CCGC 1 cut(s) 473
AclWI GGATC 2 cut(s) 6, 203
AfaI GTAC 2 cut(s) 180, 281
AfiI CCNNNNNNNGG 4 cut(s) 157, 307, 407, 500
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 2 cut(s) 34, 216
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 41, 344, 378
AluI AGCT 3 cut(s) 41, 344, 378
Alw21I GWGCWC 1 cut(s) 380
AlwI GGATC 2 cut(s) 6, 203
AoxI GGCC 1 cut(s) 461
ApeKI GCWGC 2 cut(s) 104, 507
Asp718I GGTACC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 493
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 4 cut(s) 63, 158, 252, 530
AvaII GGWCC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 380
BbvI GCAGC 2 cut(s) 91, 519
BccI CCATC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 226
BfaI CTAG 2 cut(s) 425, 465
BisI GCNGC 3 cut(s) 105, 473, 508
BlsI GCNGC 3 cut(s) 106, 474, 509
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 2 cut(s) 281, 334
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 178, 371
BpmI CTGGAG 2 cut(s) 63, 117
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 307, 407, 500
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 226
BseLI CCNNNNNNNGG 4 cut(s) 157, 307, 407, 500
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 91, 519
BshFI GGCC 1 cut(s) 463
BshNI GGYRCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 380
BslFI GGGAC 2 cut(s) 318, 430
BslI CCNNNNNNNGG 4 cut(s) 157, 307, 407, 500
BsmFI GGGAC 2 cut(s) 318, 430
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 380
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 3 cut(s) 11, 208, 523
BspACI CCGC 1 cut(s) 473
BspANI GGCC 1 cut(s) 463
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 2 cut(s) 281, 334
BspPI GGATC 2 cut(s) 6, 203
BspT107I GGYRCC 1 cut(s) 279
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 1 cut(s) 67
BssMI GATC 3 cut(s) 11, 208, 523
Bst2UI CCWGG 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 54, 96, 489
BstDEI CTNAG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 146
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 3 cut(s) 14, 211, 526
BstMBI GATC 3 cut(s) 11, 208, 523
BstMWI GCNNNNNNNGC 3 cut(s) 104, 110, 469
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 3 cut(s) 179, 445, 491
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 91, 519
BstX2I RGATCY 2 cut(s) 11, 208
BstYI RGATCY 2 cut(s) 11, 208
BsuRI GGCC 1 cut(s) 463
Cac8I GCNNGC 3 cut(s) 54, 96, 489
CciI TCATGA 1 cut(s) 529
CfoI GCGC 1 cut(s) 493
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 179, 280
CviAII CATG 8 cut(s) 176, 242, 289, 307, 366, 442, 488, 530
CviJI RGCY 9 cut(s) 41, 94, 164, 224, 344, 378, 396, 463, 472
CviKI_1 RGCY 9 cut(s) 41, 94, 164, 224, 344, 378, 396, 463, 472
CviQI GTAC 2 cut(s) 179, 280
DdeI CTNAG 1 cut(s) 90
DpnI GATC 3 cut(s) 13, 210, 525
DpnII GATC 3 cut(s) 11, 208, 523
Ecl136II GAGCTC 1 cut(s) 378
Eco147I AGGCCT 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 332
Eco53kI GAGCTC 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 378
EcoO65I GGTNACC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 380
FaeI CATG 8 cut(s) 179, 245, 292, 310, 369, 445, 491, 533
FalI AAGNNNNNCTT 1 cut(s) 525
FaqI GGGAC 2 cut(s) 318, 430
FatI CATG 8 cut(s) 175, 241, 288, 306, 365, 441, 487, 529
Fnu4HI GCNGC 3 cut(s) 105, 473, 508
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 3 cut(s) 105, 473, 508
FspBI CTAG 2 cut(s) 425, 465
GlaI GCGC 1 cut(s) 492
GluI GCNGC 3 cut(s) 105, 473, 508
GsuI CTGGAG 2 cut(s) 63, 117
HaeIII GGCC 1 cut(s) 463
HhaI GCGC 1 cut(s) 493
Hin1II CATG 8 cut(s) 179, 245, 292, 310, 369, 445, 491, 533
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 233
HphI GGTGA 4 cut(s) 63, 158, 252, 530
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 15, 351, 530
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 6 cut(s) 84, 222, 261, 347, 348, 486
HpyCH4V TGCA 4 cut(s) 113, 170, 274, 487
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 110, 469
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 8 cut(s) 179, 245, 292, 310, 369, 445, 491, 533
HspAI GCGC 1 cut(s) 491
KpnI GGTACC 1 cut(s) 283
Kzo9I GATC 3 cut(s) 11, 208, 523
LmnI GCTCC 3 cut(s) 250, 375, 383
Lsp1109I GCAGC 2 cut(s) 91, 519
LweI GCATC 2 cut(s) 178, 371
MaeI CTAG 2 cut(s) 425, 465
MaeIII GTNAC 3 cut(s) 69, 146, 518
MalI GATC 3 cut(s) 13, 210, 525
MboI GATC 3 cut(s) 11, 208, 523
MboII GAAGA 3 cut(s) 197, 218, 518
MflI RGATCY 2 cut(s) 11, 208
MhlI GDGCHC 1 cut(s) 380
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 5 cut(s) 38, 154, 408, 424, 432
Mph1103I ATGCAT 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 54
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 104, 110, 469
NdeII GATC 3 cut(s) 11, 208, 523
NlaIII CATG 8 cut(s) 179, 245, 292, 310, 369, 445, 491, 533
NlaIV GGNNCC 2 cut(s) 281, 334
NmuCI GTSAC 3 cut(s) 69, 146, 518
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 3 cut(s) 179, 445, 491
PaeI GCATGC 1 cut(s) 491
PagI TCATGA 1 cut(s) 529
PceI AGGCCT 1 cut(s) 463
PciI ACATGT 1 cut(s) 175
PctI GAATGC 1 cut(s) 54
PflMI CCANNNNNTGG 3 cut(s) 157, 307, 500
PkrI GCNGC 3 cut(s) 106, 474, 509
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 146
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 281, 334
PspPI GGNCC 1 cut(s) 332
PsuI RGATCY 2 cut(s) 11, 208
RsaI GTAC 2 cut(s) 180, 281
RsaNI GTAC 2 cut(s) 179, 280
SacI GAGCTC 1 cut(s) 380
SatI GCNGC 3 cut(s) 105, 473, 508
Sau3AI GATC 3 cut(s) 11, 208, 523
Sau96I GGNCC 1 cut(s) 332
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 380
SetI ASST 8 cut(s) 43, 76, 148, 253, 281, 346, 380, 424
SfaNI GCATC 2 cut(s) 178, 371
SinI GGWCC 1 cut(s) 332
SphI GCATGC 1 cut(s) 491
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 1 cut(s) 473
SspMI CTAG 2 cut(s) 425, 465
SstI GAGCTC 1 cut(s) 380
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 1 cut(s) 224
TatI WGTACW 1 cut(s) 178
TauI GCSGC 1 cut(s) 475
TseFI GTSAC 3 cut(s) 69, 146, 518
TseI GCWGC 2 cut(s) 104, 507
Tsp45I GTSAC 3 cut(s) 69, 146, 518
TspDTI ATGAA 6 cut(s) 112, 230, 243, 512, 518, 546
Van91I CCANNNNNTGG 3 cut(s) 157, 307, 500
VpaK11BI GGWCC 1 cut(s) 332
XceI RCATGY 3 cut(s) 179, 445, 491
XspI CTAG 2 cut(s) 425, 465
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.