Rmu_sc0003347.1_g000017

Protein transport protein sec16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003347.1
OG0021485
Physical Location & Seq
Reverse (-)
109956 .. 110345
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003347.1_g000017.1.cds

Sequence Viewer

Length: 390 bp
atggaggctattgccgaacatgtacaagaagatgctacaacaactaaagaagatccttcaacatcagccaggaatgactcttttcatgctccaccttcatcatcaccaatgagtatgcaaaggtacccaagcatgagtaatatccaaagcatgggagttatgtcaaatgccaatggtccccttccagctcactcacgaaggacggcatcatggggtgggagctccaatgatatatttagccctccaaagacgggagaaataaaacctctaggggaggcattaggcatgtcccctactttatataggcctagtgagccgccttctcaaatgcatgcgccaatgaatggcagcagcagttttggtgacgatcttcatgaagtggaactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec16 Sec16_C

Protein Analysis

129

Amino Acids

13.79

Weight (kDa)

5.02

Isoelectric Point (pI)

81.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021485)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0203381
rosa_laevigata RLG00000003531
rosa_multiflora Rmu_sc0003347.1_g000006 Rmu_sc0003347.1_g000017
rosa_samantha Rh7DG211900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 123
AccB7I CCANNNNNTGG 2 cut(s) 151, 344
AciI CCGC 1 cut(s) 317
AclWI GGATC 1 cut(s) 47
AfaI GTAC 2 cut(s) 24, 125
AfiI CCNNNNNNNGG 3 cut(s) 151, 251, 344
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 1 cut(s) 60
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 2 cut(s) 188, 222
AluI AGCT 2 cut(s) 188, 222
Alw21I GWGCWC 1 cut(s) 224
AlwI GGATC 1 cut(s) 47
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 348, 351
Asp718I GGTACC 1 cut(s) 123
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 96, 374
AvaII GGWCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 360, 363
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 70
BfaI CTAG 2 cut(s) 269, 309
BisI GCNGC 3 cut(s) 317, 349, 352
BlsI GCNGC 3 cut(s) 318, 350, 353
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 125, 178
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 22, 215
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 251, 344
BseBI CCWGG 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 151, 251, 344
BseXI GCAGC 2 cut(s) 360, 363
BshFI GGCC 1 cut(s) 307
BshNI GGYRCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 224
BslFI GGGAC 2 cut(s) 162, 274
BslI CCNNNNNNNGG 3 cut(s) 151, 251, 344
BsmFI GGGAC 2 cut(s) 162, 274
BsnI GGCC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 2 cut(s) 52, 367
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 307
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 125, 178
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 123
BsrGI TGTACA 1 cut(s) 22
BssMI GATC 2 cut(s) 52, 367
Bst2UI CCWGG 1 cut(s) 70
BstAUI TGTACA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 333
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 2 cut(s) 55, 370
BstMBI GATC 2 cut(s) 52, 367
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 3 cut(s) 23, 289, 335
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 360, 363
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 1 cut(s) 373
CfoI GCGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 23, 124
CviAII CATG 8 cut(s) 20, 86, 133, 151, 210, 286, 332, 374
CviJI RGCY 7 cut(s) 8, 68, 188, 222, 240, 307, 316
CviKI_1 RGCY 7 cut(s) 8, 68, 188, 222, 240, 307, 316
CviQI GTAC 2 cut(s) 23, 124
DpnI GATC 2 cut(s) 54, 369
DpnII GATC 2 cut(s) 52, 367
Ecl136II GAGCTC 1 cut(s) 222
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 224
FaeI CATG 8 cut(s) 23, 89, 136, 154, 213, 289, 335, 377
FalI AAGNNNNNCTT 1 cut(s) 369
FaqI GGGAC 2 cut(s) 162, 274
FatI CATG 8 cut(s) 19, 85, 132, 150, 209, 285, 331, 373
Fnu4HI GCNGC 3 cut(s) 317, 349, 352
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 317, 349, 352
FspBI CTAG 2 cut(s) 269, 309
GlaI GCGC 1 cut(s) 336
GluI GCNGC 3 cut(s) 317, 349, 352
HaeIII GGCC 1 cut(s) 307
HhaI GCGC 1 cut(s) 337
Hin1II CATG 8 cut(s) 23, 89, 136, 154, 213, 289, 335, 377
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HinfI GANTC 1 cut(s) 77
HphI GGTGA 2 cut(s) 96, 374
Hpy188III TCNNGA 2 cut(s) 195, 374
HpyAV CCTTC 5 cut(s) 66, 105, 191, 192, 330
HpyCH4V TGCA 2 cut(s) 118, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
Hsp92II CATG 8 cut(s) 23, 89, 136, 154, 213, 289, 335, 377
HspAI GCGC 1 cut(s) 335
KpnI GGTACC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 52, 367
LmnI GCTCC 3 cut(s) 94, 219, 227
LpnPI CCDG 3 cut(s) 55, 82, 198
Lsp1109I GCAGC 2 cut(s) 360, 363
LweI GCATC 2 cut(s) 22, 215
MaeI CTAG 2 cut(s) 269, 309
MaeIII GTNAC 1 cut(s) 362
MalI GATC 2 cut(s) 54, 369
MboI GATC 2 cut(s) 52, 367
MboII GAAGA 3 cut(s) 41, 62, 362
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 224
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 3 cut(s) 252, 268, 276
Mph1103I ATGCAT 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 313
NdeII GATC 2 cut(s) 52, 367
NlaIII CATG 8 cut(s) 23, 89, 136, 154, 213, 289, 335, 377
NlaIV GGNNCC 2 cut(s) 125, 178
NmuCI GTSAC 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 333
NspI RCATGY 3 cut(s) 23, 289, 335
PaeI GCATGC 1 cut(s) 335
PagI TCATGA 1 cut(s) 373
PceI AGGCCT 1 cut(s) 307
PciI ACATGT 1 cut(s) 19
PflMI CCANNNNNTGG 2 cut(s) 151, 344
PkrI GCNGC 3 cut(s) 318, 350, 353
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PscI ACATGT 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 125, 178
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 2 cut(s) 24, 125
RsaNI GTAC 2 cut(s) 23, 124
SacI GAGCTC 1 cut(s) 224
SatI GCNGC 3 cut(s) 317, 349, 352
Sau3AI GATC 2 cut(s) 52, 367
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 224
SetI ASST 5 cut(s) 97, 125, 190, 224, 268
SfaNI GCATC 2 cut(s) 22, 215
SinI GGWCC 1 cut(s) 176
SphI GCATGC 1 cut(s) 335
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 1 cut(s) 317
SspMI CTAG 2 cut(s) 269, 309
SstI GAGCTC 1 cut(s) 224
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 68
TatI WGTACW 1 cut(s) 22
TauI GCSGC 1 cut(s) 319
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 2 cut(s) 348, 351
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 5 cut(s) 74, 87, 356, 362, 390
Van91I CCANNNNNTGG 2 cut(s) 151, 344
VpaK11BI GGWCC 1 cut(s) 176
XceI RCATGY 3 cut(s) 23, 289, 335
XspI CTAG 2 cut(s) 269, 309
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.