Rmu_sc0003347.1_g000006

Protein transport protein sec16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003347.1
OG0021485
Physical Location & Seq
Reverse (-)
36788 .. 41236
4449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003347.1_g000006.1.cds

Sequence Viewer

Length: 1011 bp
atgctccgggatatggccggacctgcaatcgtagatgttgaagcgagcattattgtaatcggagaagcaagtccagaggctaagttgggtgaaacaaataagttctactatgacgaaaaacttaagagatgggttgaggaaggtgctgaacctccagctgaagaacctgcattgcctcctcccccaacaactgcagtcttccagaatggtgtttctgattacaacttaaggtctgctttaaagagagaaggggggtcccccactaaagggggcccagatttacgtacttcaactcctccaggaccaacttcagggacacctcccattccacccagctcaaatcaattctcagctcgtggacgaatgggtattagatccagatatgttgacactttcaaccaagctggaggaatgccagcaaacttgttccagtcaccttctgttccatctattaagcctgctgttgctgccaatgcaaagtttttcattcccactccagcgtcatcaggtgaccagactatggaggctattgccgaacatgtacaagaagatgctacaacaactaaagaagatccttcaacatcatcgccaatgagtatgcaaaggtacccaagcatgaataatatccaaagaactatgccaatggtccccttccagctcactcacgaaggacggcatcatgggaatctagaagggctcaatccacctgaaaagaaacttggcacacccagaggcatcatccaaggtaacaaaggagtagccaaagattcacccgggtcccagatccagacccatggaaaagtctggcccagcatatgtgtggcgtcggcccagccccagcccatctggataacccagattactctgggtacccaacgcagagaactcaagctccaccaccggccatcacctgacgtgatctgcaaccatccccaccaccagaacaagatcagccaccaagtaagtacccagccaccactttgcaagaaagcagaacccagcctagcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec16 Sec16_C

Protein Analysis

336

Amino Acids

36.31

Weight (kDa)

8.68

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021485)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0203381
rosa_laevigata RLG00000003531
rosa_multiflora Rmu_sc0003347.1_g000006 Rmu_sc0003347.1_g000017
rosa_samantha Rh7DG211900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 31, 175
Acc65I GGTACC 2 cut(s) 606, 869
AccB1I GGYRCC 2 cut(s) 606, 869
AccB7I CCANNNNNTGG 1 cut(s) 520
AclWI GGATC 3 cut(s) 369, 566, 778
AcoI YGGCCR 2 cut(s) 15, 902
AcuI CTGAAG 2 cut(s) 180, 294
AcyI GRCGYC 1 cut(s) 824
AfaI GTAC 5 cut(s) 286, 543, 608, 871, 967
AfiI CCNNNNNNNGG 5 cut(s) 13, 266, 267, 311, 520
AflII CTTAAG 2 cut(s) 122, 226
AflIII ACRYGT 1 cut(s) 538
AgsI TTSAA 4 cut(s) 41, 291, 397, 579
AjiI CACGTC 1 cut(s) 916
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 702, 734
AloI GAACNNNNNNTCC 2 cut(s) 876, 908
AluBI AGCT 6 cut(s) 158, 336, 353, 404, 658, 892
AluI AGCT 6 cut(s) 158, 336, 353, 404, 658, 892
AlwI GGATC 3 cut(s) 369, 566, 778
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 5 cut(s) 15, 271, 806, 828, 902
ApaI GGGCCC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 467
Asp718I GGTACC 2 cut(s) 606, 869
AspS9I GGNCC 9 cut(s) 20, 255, 271, 272, 302, 646, 777, 807, 829
AsuC2I CCSGG 3 cut(s) 8, 774, 775
AsuHPI GGTGA 5 cut(s) 101, 426, 521, 762, 900
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 5 cut(s) 20, 255, 302, 646, 777
BaeGI GKGCMC 1 cut(s) 275
BanI GGYRCC 2 cut(s) 606, 869
BanII GRGCYC 2 cut(s) 275, 699
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 454
BccI CCATC 5 cut(s) 123, 454, 851, 913, 936
BceAI ACGGC 1 cut(s) 689
BciT130I CCWGG 1 cut(s) 300
BcnI CCSGG 3 cut(s) 8, 774, 775
BfaI CTAG 2 cut(s) 689, 1004
BfmI CTRYAG 1 cut(s) 192
BfrI CTTAAG 2 cut(s) 122, 226
BfuAI ACCTGC 2 cut(s) 31, 175
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 4 cut(s) 8, 300, 774, 775
Bme18I GGWCC 5 cut(s) 20, 255, 302, 646, 777
BmeT110I CYCGRG 1 cut(s) 773
BmgBI CACGTC 1 cut(s) 916
BmgT120I GGNCC 9 cut(s) 20, 255, 271, 272, 302, 646, 777, 807, 829
BmiI GGNNCC 9 cut(s) 256, 257, 272, 273, 608, 648, 778, 779, 871
BmrFI CCNGG 4 cut(s) 8, 300, 774, 775
BmsI GCATC 3 cut(s) 541, 685, 744
BpiI GAAGAC 1 cut(s) 190
BpmI CTGGAG 4 cut(s) 138, 282, 426, 480
BpuEI CTTGAG 1 cut(s) 872
BpuMI CCSGG 3 cut(s) 8, 774, 775
BsaAI YACGTR 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 824
BsaJI CCNNGG 3 cut(s) 742, 773, 793
BsaXI ACNNNNNCTCC 4 cut(s) 277, 307, 876, 906
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 266, 267, 311, 520
Bse118I RCCGGY 1 cut(s) 900
Bse1I ACTGG 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 742, 773, 793
BseGI GGATG 2 cut(s) 738, 928
BseLI CCNNNNNNNGG 5 cut(s) 13, 266, 267, 311, 520
BseMI GCAATG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 430
BseRI GAGGAG 2 cut(s) 168, 285
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 1 cut(s) 454
BseYI CCCAGC 6 cut(s) 332, 809, 831, 837, 969, 998
BshFI GGCC 5 cut(s) 17, 273, 808, 830, 904
BshNI GGYRCC 2 cut(s) 606, 869
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 4 cut(s) 7, 18, 774, 901
BslFI GGGAC 4 cut(s) 241, 328, 632, 763
BslI CCNNNNNNNGG 5 cut(s) 13, 266, 267, 311, 520
BsmFI GGGAC 4 cut(s) 241, 328, 632, 763
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 5 cut(s) 17, 273, 808, 830, 904
BsoBI CYCGRG 1 cut(s) 773
Bsp120I GGGCCC 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 275, 699
Bsp1407I TGTACA 1 cut(s) 541
Bsp143I GATC 5 cut(s) 374, 571, 783, 918, 948
Bsp19I CCATGG 1 cut(s) 793
BspANI GGCC 5 cut(s) 17, 273, 808, 830, 904
BspCNI CTCAG 1 cut(s) 362
BspLI GGNNCC 9 cut(s) 256, 257, 272, 273, 608, 648, 778, 779, 871
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 2 cut(s) 31, 175
BspPI GGATC 3 cut(s) 369, 566, 778
BspT107I GGYRCC 2 cut(s) 606, 869
BspTI CTTAAG 2 cut(s) 122, 226
BsrDI GCAATG 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 900
BsrGI TGTACA 1 cut(s) 541
BsrI ACTGG 1 cut(s) 430
BssAI RCCGGY 1 cut(s) 900
BssECI CCNNGG 3 cut(s) 742, 773, 793
BssMI GATC 5 cut(s) 374, 571, 783, 918, 948
BssNI GRCGYC 1 cut(s) 824
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 2 cut(s) 742, 793
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 300
BstACI GRCGYC 1 cut(s) 824
BstAFI CTTAAG 2 cut(s) 122, 226
BstAUI TGTACA 1 cut(s) 541
BstBAI YACGTR 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 46, 417, 459
BstDEI CTNAG 2 cut(s) 81, 349
BstDSI CCRYGG 1 cut(s) 793
BstEII GGTNACC 1 cut(s) 509
BstF5I GGATG 2 cut(s) 738, 928
BstKTI GATC 5 cut(s) 377, 574, 786, 921, 951
BstMBI GATC 5 cut(s) 374, 571, 783, 918, 948
BstMWI GCNNNNNNNGC 3 cut(s) 23, 467, 473
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 542
BstPI GGTNACC 1 cut(s) 509
BstSCI CCNGG 4 cut(s) 6, 298, 772, 773
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 275
BstSNI TACGTA 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 3 cut(s) 374, 571, 783
BstXI CCANNNNNNTGG 1 cut(s) 794
BstYI RGATCY 3 cut(s) 374, 571, 783
BsuRI GGCC 5 cut(s) 17, 273, 808, 830, 904
BtgI CCRYGG 1 cut(s) 793
BtgZI GCGATG 1 cut(s) 570
BtrI CACGTC 1 cut(s) 916
BtsCI GGATG 2 cut(s) 738, 928
BveI ACCTGC 2 cut(s) 31, 175
Cac8I GCNNGC 3 cut(s) 46, 417, 459
Cfr10I RCCGGY 1 cut(s) 900
Cfr13I GGNCC 9 cut(s) 20, 255, 271, 272, 302, 646, 777, 807, 829
Cfr9I CCCGGG 1 cut(s) 773
CseI GACGC 2 cut(s) 489, 813
Csp6I GTAC 5 cut(s) 285, 542, 607, 870, 966
CviAII CATG 4 cut(s) 539, 616, 680, 794
CviQI GTAC 5 cut(s) 285, 542, 607, 870, 966
DdeI CTNAG 2 cut(s) 81, 349
DpnI GATC 5 cut(s) 376, 573, 785, 920, 950
DpnII GATC 5 cut(s) 374, 571, 783, 918, 948
DraI TTTAAA 1 cut(s) 240
EaeI YGGCCR 2 cut(s) 15, 902
Eco105I TACGTA 1 cut(s) 284
Eco130I CCWWGG 2 cut(s) 742, 793
Eco24I GRGCYC 2 cut(s) 275, 699
Eco47I GGWCC 5 cut(s) 20, 255, 302, 646, 777
Eco57I CTGAAG 2 cut(s) 180, 294
Eco88I CYCGRG 1 cut(s) 773
Eco91I GGTNACC 1 cut(s) 509
EcoO109I RGGNCCY 3 cut(s) 255, 271, 777
EcoO65I GGTNACC 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 2 cut(s) 742, 793
EcoT38I GRGCYC 2 cut(s) 275, 699
ErhI CCWWGG 2 cut(s) 742, 793
FaeI CATG 4 cut(s) 542, 619, 683, 797
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FaqI GGGAC 4 cut(s) 241, 328, 632, 763
FatI CATG 4 cut(s) 538, 615, 679, 793
FauNDI CATATG 1 cut(s) 815
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 2 cut(s) 725, 915
FriOI GRGCYC 2 cut(s) 275, 699
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 2 cut(s) 689, 1004
GluI GCNGC 1 cut(s) 468
GsaI CCCAGC 6 cut(s) 336, 813, 835, 841, 973, 1002
GsuI CTGGAG 4 cut(s) 138, 282, 426, 480
HaeIII GGCC 5 cut(s) 17, 273, 808, 830, 904
HapII CCGG 4 cut(s) 7, 18, 774, 901
HgaI GACGC 2 cut(s) 489, 813
Hin1I GRCGYC 1 cut(s) 824
Hin1II CATG 4 cut(s) 542, 619, 683, 797
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 2 cut(s) 685, 767
HpaII CCGG 4 cut(s) 7, 18, 774, 901
HphI GGTGA 5 cut(s) 101, 426, 521, 762, 900
Hpy166II GTNNAC 2 cut(s) 359, 388
Hpy188I TCNGA 2 cut(s) 62, 217
Hpy188III TCNNGA 7 cut(s) 74, 202, 378, 665, 689, 787, 847
Hpy8I GTNNAC 2 cut(s) 359, 388
Hpy99I CGWCG 1 cut(s) 829
HpyAV CCTTC 7 cut(s) 134, 242, 447, 585, 661, 662, 686
HpyCH4IV ACGT 2 cut(s) 283, 915
HpyCH4V TGCA 7 cut(s) 26, 170, 194, 476, 601, 924, 984
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 467, 473
HpyF3I CTNAG 2 cut(s) 81, 349
HpySE526I ACGT 2 cut(s) 283, 915
Hsp92I GRCGYC 1 cut(s) 824
Hsp92II CATG 4 cut(s) 542, 619, 683, 797
KflI GGGWCCC 2 cut(s) 255, 777
KpnI GGTACC 2 cut(s) 610, 873
Kzo9I GATC 5 cut(s) 374, 571, 783, 918, 948
LmnI GCTCC 2 cut(s) 9, 897
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 3 cut(s) 541, 685, 744
MaeI CTAG 2 cut(s) 689, 1004
MaeII ACGT 2 cut(s) 283, 915
MaeIII GTNAC 3 cut(s) 432, 509, 746
MalI GATC 5 cut(s) 376, 573, 785, 920, 950
MboI GATC 5 cut(s) 374, 571, 783, 918, 948
MboII GAAGA 4 cut(s) 173, 190, 560, 581
MflI RGATCY 3 cut(s) 374, 571, 783
MhlI GDGCHC 2 cut(s) 275, 699
MluCI AATT 1 cut(s) 344
MseI TTAA 4 cut(s) 123, 227, 239, 453
MslI CAYNNNNRTG 1 cut(s) 818
MspA1I CMGCKG 1 cut(s) 158
MspCI CTTAAG 2 cut(s) 122, 226
MspI CCGG 4 cut(s) 7, 18, 774, 901
MspR9I CCNGG 4 cut(s) 8, 300, 774, 775
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 3 cut(s) 23, 467, 473
NciI CCSGG 3 cut(s) 8, 774, 775
NcoI CCATGG 1 cut(s) 793
NdeI CATATG 1 cut(s) 815
NdeII GATC 5 cut(s) 374, 571, 783, 918, 948
NlaIII CATG 4 cut(s) 542, 619, 683, 797
NlaIV GGNNCC 9 cut(s) 256, 257, 272, 273, 608, 648, 778, 779, 871
NmuCI GTSAC 2 cut(s) 432, 509
NspI RCATGY 1 cut(s) 542
PciI ACATGT 1 cut(s) 538
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 685, 767
PflMI CCANNNNNTGG 1 cut(s) 520
PfoI TCCNGGA 2 cut(s) 6, 298
PkrI GCNGC 1 cut(s) 469
Ppu21I YACGTR 1 cut(s) 284
PpuMI RGGWCCY 2 cut(s) 255, 777
PscI ACATGT 1 cut(s) 538
Psp5II RGGWCCY 2 cut(s) 255, 777
Psp6I CCWGG 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 509
PspFI CCCAGC 6 cut(s) 332, 809, 831, 837, 969, 998
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 9 cut(s) 256, 257, 272, 273, 608, 648, 778, 779, 871
PspOMI GGGCCC 1 cut(s) 271
PspPI GGNCC 9 cut(s) 20, 255, 271, 272, 302, 646, 777, 807, 829
PspPPI RGGWCCY 2 cut(s) 255, 777
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 3 cut(s) 374, 571, 783
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 5 cut(s) 286, 543, 608, 871, 967
RsaNI GTAC 5 cut(s) 285, 542, 607, 870, 966
RseI CAYNNNNRTG 1 cut(s) 818
SaqAI TTAA 4 cut(s) 123, 227, 239, 453
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 5 cut(s) 374, 571, 783, 918, 948
Sau96I GGNCC 9 cut(s) 20, 255, 271, 272, 302, 646, 777, 807, 829
ScrFI CCNGG 4 cut(s) 8, 300, 774, 775
SduI GDGCHC 2 cut(s) 275, 699
SfaNI GCATC 3 cut(s) 541, 685, 744
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 5 cut(s) 20, 255, 302, 646, 777
SmaI CCCGGG 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 3 cut(s) 122, 226, 887
SmoI CTYRAG 3 cut(s) 122, 226, 887
SnaBI TACGTA 1 cut(s) 284
Sse9I AATT 1 cut(s) 344
SspMI CTAG 2 cut(s) 689, 1004
StyD4I CCNGG 4 cut(s) 6, 298, 772, 773
StyI CCWWGG 2 cut(s) 742, 793
TaiI ACGT 2 cut(s) 286, 918
TasI AATT 1 cut(s) 344
TatI WGTACW 1 cut(s) 541
TfiI GAWTC 2 cut(s) 685, 767
Tru1I TTAA 4 cut(s) 123, 227, 239, 453
Tru9I TTAA 4 cut(s) 123, 227, 239, 453
TseFI GTSAC 2 cut(s) 432, 509
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 2 cut(s) 432, 509
TspDTI ATGAA 2 cut(s) 475, 632
TspMI CCCGGG 1 cut(s) 773
Van91I CCANNNNNTGG 1 cut(s) 520
Vha464I CTTAAG 2 cut(s) 122, 226
VpaK11BI GGWCC 5 cut(s) 20, 255, 302, 646, 777
XbaI TCTAGA 1 cut(s) 688
XceI RCATGY 1 cut(s) 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 817
XmaI CCCGGG 1 cut(s) 773
XspI CTAG 2 cut(s) 689, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.