Rh7DG211900

Protein transport protein sec16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0021485
Physical Location & Seq
Reverse (-)
20431537 .. 20431857
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG211900.1

Sequence Viewer

Length: 321 bp
ATGCCAGCAAACTTGTTCCAGTCACCTTCTGTTCCATCGACTAAGCCTGCTGTTGCTGCCAATGCAAAGTTTTTCATTCCCACTCCAGCATCATCAGGTGACCAGACCATGGAGGCTATTGCCGAACATGTACAAGAAGATGCTACAACAACTAAAGAAGATCCTTCAACATCATCACCAATGAGTATGCAAAGGTACCCAAGCATGAATAATATCCAAAGAATTATGCCAATGGTCCCCTTCCAGCTCACTCATGAAGGACGACATCATGGGGTGGGAGCTCCAATGATATATTTAGCCCTCCAAAGACTGGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec16 Sec16_C

Protein Analysis

106

Amino Acids

11.62

Weight (kDa)

6.39

Isoelectric Point (pI)

66.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021485)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0203381
rosa_laevigata RLG00000003531
rosa_multiflora Rmu_sc0003347.1_g000006 Rmu_sc0003347.1_g000017
rosa_samantha Rh7DG211900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 195
AccB7I CCANNNNNTGG 2 cut(s) 109, 310
AclWI GGATC 1 cut(s) 155
AfaI GTAC 2 cut(s) 132, 197
AfiI CCNNNNNNNGG 2 cut(s) 109, 310
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 1 cut(s) 168
AluBI AGCT 2 cut(s) 247, 281
AluI AGCT 2 cut(s) 247, 281
Alw21I GWGCWC 1 cut(s) 283
AlwI GGATC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 3 cut(s) 15, 110, 168
AvaII GGWCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 43
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 197, 237
BmsI GCATC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 310
Bse1I ACTGG 2 cut(s) 19, 315
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 109, 310
BseNI ACTGG 2 cut(s) 19, 315
BseXI GCAGC 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 283
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 109, 310
BsmFI GGGAC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 283
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 197, 237
BspPI GGATC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 130
BsrI ACTGG 2 cut(s) 19, 315
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 6, 48
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 98
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 56, 62
BstNSI RCATGY 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtgI CCRYGG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 6, 48
CciI TCATGA 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 2 cut(s) 131, 196
CviAII CATG 5 cut(s) 109, 128, 205, 254, 269
CviJI RGCY 5 cut(s) 46, 116, 247, 281, 299
CviKI_1 RGCY 5 cut(s) 46, 116, 247, 281, 299
CviQI GTAC 2 cut(s) 131, 196
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 281
Eco91I GGTNACC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 5 cut(s) 112, 131, 208, 257, 272
FaiI YATR 8 cut(s) 110, 129, 188, 206, 227, 255, 270, 292
FaqI GGGAC 1 cut(s) 221
FatI CATG 5 cut(s) 108, 127, 204, 253, 268
Fnu4HI GCNGC 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 69
Hin1II CATG 5 cut(s) 112, 131, 208, 257, 272
HphI GGTGA 3 cut(s) 15, 110, 168
Hpy188III TCNNGA 1 cut(s) 254
HpyAV CCTTC 4 cut(s) 36, 174, 250, 251
HpyCH4V TGCA 2 cut(s) 65, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 62
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 5 cut(s) 112, 131, 208, 257, 272
KpnI GGTACC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 278, 286
LpnPI CCDG 8 cut(s) 18, 32, 60, 81, 99, 116, 257, 296
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 2 cut(s) 98, 130
MaeIII GTNAC 2 cut(s) 21, 98
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 149, 170
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 1 cut(s) 222
MnlI CCTC 2 cut(s) 106, 311
MwoI GCNNNNNNNGC 2 cut(s) 56, 62
NcoI CCATGG 1 cut(s) 108
NdeII GATC 1 cut(s) 160
NlaIII CATG 5 cut(s) 112, 131, 208, 257, 272
NlaIV GGNNCC 2 cut(s) 197, 237
NmuCI GTSAC 2 cut(s) 21, 98
NspI RCATGY 1 cut(s) 131
PagI TCATGA 1 cut(s) 253
PciI ACATGT 1 cut(s) 127
PflMI CCANNNNNTGG 2 cut(s) 109, 310
PkrI GCNGC 1 cut(s) 58
PscI ACATGT 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 283
PspEI GGTNACC 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 197, 237
PspPI GGNCC 1 cut(s) 235
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 2 cut(s) 132, 197
RsaNI GTAC 2 cut(s) 131, 196
SacI GAGCTC 1 cut(s) 283
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 283
SetI ASST 5 cut(s) 28, 100, 197, 249, 283
SfaNI GCATC 2 cut(s) 98, 130
SinI GGWCC 1 cut(s) 235
Sse9I AATT 1 cut(s) 222
SstI GAGCTC 1 cut(s) 283
StyI CCWWGG 1 cut(s) 108
TaqI TCGA 1 cut(s) 38
TasI AATT 1 cut(s) 222
TatI WGTACW 1 cut(s) 130
TseFI GTSAC 2 cut(s) 21, 98
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 2 cut(s) 21, 98
TspDTI ATGAA 3 cut(s) 64, 221, 270
Van91I CCANNNNNTGG 2 cut(s) 109, 310
VpaK11BI GGWCC 1 cut(s) 235
XceI RCATGY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.