RLG00000003531

Protein transport protein sec16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0021485
Physical Location & Seq
Forward (+)
49740899 .. 49741383
485 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003531

Sequence Viewer

Length: 315 bp
ATGCCAGCAAACTTGTTCCAGTCACCTTCTGTTCCATCTATTAAGCCTGATGTTGCTGCCAATGCAAAGTTTTTCATTCCCACTCCAGCGTCATCAGGTGACCAGACTATGGAGGCTATTGCCGAACATGTACAAGAAGATGCTACAACAACTAAAGAAGATCCTTCAACATCAGCCAGGAATGACTCTTTTCATGCTCCATCTTCATCATCACCAATGAGTATGCAAAGGCCTAGTGAGCCGCCTTCTCAAATGCATGCGCCAATGAATGGCAGCGGCAGTTTTGGTGACGATCTTCATGAAGTGGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec16 Sec16_C

Protein Analysis

105

Amino Acids

11.03

Weight (kDa)

4.51

Isoelectric Point (pI)

75.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021485)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0203381
rosa_laevigata RLG00000003531
rosa_multiflora Rmu_sc0003347.1_g000006 Rmu_sc0003347.1_g000017
rosa_samantha Rh7DG211900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 109, 269
AciI CCGC 2 cut(s) 242, 276
AclWI GGATC 1 cut(s) 155
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 2 cut(s) 109, 269
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 1 cut(s) 168
AjnI CCWGG 1 cut(s) 176
AlwI GGATC 1 cut(s) 155
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 56, 273
AspLEI GCGC 1 cut(s) 262
AsuHPI GGTGA 4 cut(s) 15, 110, 204, 299
BbvI GCAGC 2 cut(s) 43, 285
BccI CCATC 2 cut(s) 43, 208
BciT130I CCWGG 1 cut(s) 178
BfaI CTAG 1 cut(s) 234
BisI GCNGC 4 cut(s) 57, 242, 274, 277
BlsI GCNGC 4 cut(s) 58, 243, 275, 278
Bme1390I CCNGG 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 269
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 109, 269
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 43, 285
BshFI GGCC 1 cut(s) 232
BslI CCNNNNNNNGG 2 cut(s) 109, 269
BsnI GGCC 1 cut(s) 232
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 2 cut(s) 160, 292
BspACI CCGC 2 cut(s) 242, 276
BspANI GGCC 1 cut(s) 232
BspHI TCATGA 1 cut(s) 298
BspPI GGATC 1 cut(s) 155
BsrGI TGTACA 1 cut(s) 130
BsrI ACTGG 1 cut(s) 19
BssMI GATC 2 cut(s) 160, 292
Bst2UI CCWGG 1 cut(s) 178
BstAUI TGTACA 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 6, 258
BstEII GGTNACC 1 cut(s) 98
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 2 cut(s) 163, 295
BstMBI GATC 2 cut(s) 160, 292
BstMWI GCNNNNNNNGC 2 cut(s) 62, 238
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 2 cut(s) 131, 260
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 43, 285
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 6, 258
CciI TCATGA 1 cut(s) 298
CfoI GCGC 1 cut(s) 262
CseI GACGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 131
CviAII CATG 4 cut(s) 128, 194, 257, 299
CviJI RGCY 5 cut(s) 46, 116, 176, 232, 241
CviKI_1 RGCY 5 cut(s) 46, 116, 176, 232, 241
CviQI GTAC 1 cut(s) 131
DpnI GATC 2 cut(s) 162, 294
DpnII GATC 2 cut(s) 160, 292
Eco147I AGGCCT 1 cut(s) 232
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 176
EcoT22I ATGCAT 1 cut(s) 258
FaeI CATG 4 cut(s) 131, 197, 260, 302
FaiI YATR 6 cut(s) 110, 129, 195, 224, 258, 300
FalI AAGNNNNNCTT 1 cut(s) 294
FatI CATG 4 cut(s) 127, 193, 256, 298
Fnu4HI GCNGC 4 cut(s) 57, 242, 274, 277
Fsp4HI GCNGC 4 cut(s) 57, 242, 274, 277
FspBI CTAG 1 cut(s) 234
GlaI GCGC 1 cut(s) 261
GluI GCNGC 4 cut(s) 57, 242, 274, 277
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 232
HgaI GACGC 1 cut(s) 78
HhaI GCGC 1 cut(s) 262
Hin1II CATG 4 cut(s) 131, 197, 260, 302
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 1 cut(s) 185
HphI GGTGA 4 cut(s) 15, 110, 204, 299
Hpy188III TCNNGA 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 36, 174, 255
HpyCH4V TGCA 3 cut(s) 65, 226, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 238
Hsp92II CATG 4 cut(s) 131, 197, 260, 302
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 2 cut(s) 160, 292
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 8 cut(s) 18, 32, 60, 81, 99, 116, 163, 190
Lsp1109I GCAGC 2 cut(s) 43, 285
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 3 cut(s) 21, 98, 287
MalI GATC 2 cut(s) 162, 294
MboI GATC 2 cut(s) 160, 292
MboII GAAGA 4 cut(s) 149, 170, 195, 287
MflI RGATCY 1 cut(s) 160
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 1 cut(s) 106
Mph1103I ATGCAT 1 cut(s) 258
MseI TTAA 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 62, 238
NdeII GATC 2 cut(s) 160, 292
NlaIII CATG 4 cut(s) 131, 197, 260, 302
NmuCI GTSAC 3 cut(s) 21, 98, 287
NsiI ATGCAT 1 cut(s) 258
NspI RCATGY 2 cut(s) 131, 260
PaeI GCATGC 1 cut(s) 260
PagI TCATGA 1 cut(s) 298
PceI AGGCCT 1 cut(s) 232
PciI ACATGT 1 cut(s) 127
PflMI CCANNNNNTGG 2 cut(s) 109, 269
PkrI GCNGC 4 cut(s) 58, 243, 275, 278
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PscI ACATGT 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 176
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 1 cut(s) 176
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 4 cut(s) 57, 242, 274, 277
Sau3AI GATC 2 cut(s) 160, 292
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 178
SetI ASST 2 cut(s) 28, 100
SfaNI GCATC 1 cut(s) 130
SphI GCATGC 1 cut(s) 260
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 2 cut(s) 242, 276
SspMI CTAG 1 cut(s) 234
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 176
TatI WGTACW 1 cut(s) 130
TauI GCSGC 2 cut(s) 244, 279
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 3 cut(s) 21, 98, 287
TseI GCWGC 2 cut(s) 56, 273
Tsp45I GTSAC 3 cut(s) 21, 98, 287
TspDTI ATGAA 6 cut(s) 64, 182, 195, 281, 287, 315
Van91I CCANNNNNTGG 2 cut(s) 109, 269
XceI RCATGY 2 cut(s) 131, 260
XspI CTAG 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.