RchiOBHm_Chr7g0205481

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
23203584 .. 23203955
372 bp
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UTR
Exon/CDS
Intron
PRQ18387

Sequence Viewer

Length: 162 bp
ATGGCTCCTGTTGTAATGGAGGAAGTTTATCAAGCTGTTCATAGTATTGGACCCTTGAAAGCACCTGGACCGGACGGTCTACATGCAGTCTTCTACCATTTCTACTGGAATCAGGTAAGAGAACCTTTGTTCAAACTTGTGTCGGATTTTTTTCACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

53

Amino Acids

6.12

Weight (kDa)

5.99

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020605)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 79
AgsI TTSAA 2 cut(s) 58, 133
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 50, 68
AvaII GGWCC 2 cut(s) 50, 68
BbsI GAAGAC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 2 cut(s) 50, 68
BmgT120I GGNCC 2 cut(s) 50, 68
BmiI GGNNCC 2 cut(s) 6, 52
BmrFI CCNGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 6, 52
BsrI ACTGG 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 77
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 50, 68
CviAII CATG 1 cut(s) 83
CviJI RGCY 2 cut(s) 5, 35
CviKI_1 RGCY 2 cut(s) 5, 35
DrdI GACNNNNNNGTC 1 cut(s) 75
DseDI GACNNNNNNGTC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 50, 68
EcoRII CCWGG 1 cut(s) 64
FaeI CATG 1 cut(s) 86
FaiI YATR 3 cut(s) 42, 84, 160
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FatI CATG 1 cut(s) 82
FblI GTMKAC 1 cut(s) 79
HapII CCGG 1 cut(s) 71
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 109
HpaII CCGG 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 86
Hsp92II CATG 1 cut(s) 86
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 6 cut(s) 21, 51, 78, 84, 91, 98
MboII GAAGA 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 1 cut(s) 13
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 2 cut(s) 6, 52
NspI RCATGY 1 cut(s) 86
PfeI GAWTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 6, 52
PspPI GGNCC 2 cut(s) 50, 68
Sau96I GGNCC 2 cut(s) 50, 68
ScrFI CCNGG 1 cut(s) 66
SetI ASST 4 cut(s) 37, 67, 117, 127
SinI GGWCC 2 cut(s) 50, 68
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 1 cut(s) 77
TfiI GAWTC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 50, 68
XceI RCATGY 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.