Rmu_sc0004080.1_g000010

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004080.1
OG0020605
Physical Location & Seq
Reverse (-)
41863 .. 44635
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004080.1_g000010.1.cds

Sequence Viewer

Length: 420 bp
atgaaagttgctctactcttcatgatgaacatttctggatggcttgattgttgtggttttgagttttggcaggtggtggttgtggtggttgcaccgccgactgtggcggtgttatggtggccttccggccatggaatggactttcagagaagattcaaagcaacaaatgccattaacttggaaagggctacatcgtttgttaatattcttgatcccattattgatgatgctgacaatgtgaacctcttaaaacctgtaacaatggatgagatccagctagctgttaactctattggagccctaaaagctcctagacctgatggcattaatgccatgttttatcagaagcactgggacttggtcaaagacaagataagtaacattgttatggatttctttcaaaataatactccactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

139

Amino Acids

15.73

Weight (kDa)

5.17

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020605)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0205481
rosa_multiflora Rmu_co8129578.1_g000001 Rmu_sc0002769.1_g000011 Rmu_sc0004080.1_g000010 Rmu_sc0010099.1_g000004
rosa_samantha Rh5DG183700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 61
Acc36I ACCTGC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 136
AciI CCGC 2 cut(s) 95, 107
AclWI GGATC 2 cut(s) 206, 265
AcoI YGGCCR 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 2 cut(s) 157, 401
AluBI AGCT 3 cut(s) 277, 281, 308
AluI AGCT 3 cut(s) 277, 281, 308
AlwI GGATC 2 cut(s) 206, 265
AoxI GGCC 2 cut(s) 119, 127
AseI ATTAAT 1 cut(s) 327
AsuNHI GCTAGC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 301
BccI CCATC 2 cut(s) 33, 314
BfaI CTAG 2 cut(s) 278, 312
BfuAI ACCTGC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 1 cut(s) 217
BmtI GCTAGC 1 cut(s) 281
BmuI ACTGGG 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 44, 271
BseLI CCNNNNNNNGG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 356
BshFI GGCC 2 cut(s) 121, 129
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 2 cut(s) 121, 129
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 2 cut(s) 211, 270
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 2 cut(s) 95, 107
BspANI GGCC 2 cut(s) 121, 129
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 61
BspOI GCTAGC 1 cut(s) 281
BspPI GGATC 2 cut(s) 206, 265
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 211, 270
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 2 cut(s) 44, 271
BstKTI GATC 2 cut(s) 214, 273
BstMBI GATC 2 cut(s) 211, 270
BstMWI GCNNNNNNNGC 2 cut(s) 167, 305
BstX2I RGATCY 1 cut(s) 270
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 2 cut(s) 121, 129
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 2 cut(s) 44, 271
BtsIMutI CAGTG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 279
CciI TCATGA 1 cut(s) 21
CviAII CATG 3 cut(s) 22, 131, 334
CviJI RGCY 8 cut(s) 43, 121, 129, 188, 277, 281, 299, 308
CviKI_1 RGCY 8 cut(s) 43, 121, 129, 188, 277, 281, 299, 308
DpnI GATC 2 cut(s) 213, 272
DpnII GATC 2 cut(s) 211, 270
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 3 cut(s) 25, 134, 337
FaiI YATR 6 cut(s) 23, 115, 132, 335, 389, 418
FaqI GGGAC 1 cut(s) 368
FatI CATG 3 cut(s) 21, 130, 333
FokI GGATG 2 cut(s) 51, 278
FriOI GRGCYC 1 cut(s) 301
FspBI CTAG 2 cut(s) 278, 312
HaeIII GGCC 2 cut(s) 121, 129
HapII CCGG 1 cut(s) 126
Hin1II CATG 3 cut(s) 25, 134, 337
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 1 cut(s) 153
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 2 cut(s) 241, 286
Hpy188I TCNGA 2 cut(s) 147, 345
Hpy188III TCNNGA 3 cut(s) 22, 36, 209
Hpy8I GTNNAC 2 cut(s) 241, 286
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 305
Hsp92II CATG 3 cut(s) 25, 134, 337
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 211, 270
LmnI GCTCC 2 cut(s) 296, 313
LpnPI CCDG 7 cut(s) 21, 56, 139, 267, 287, 330, 337
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 278, 312
MaeIII GTNAC 2 cut(s) 256, 377
MalI GATC 2 cut(s) 213, 272
MboI GATC 2 cut(s) 211, 270
MboII GAAGA 2 cut(s) 10, 162
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 301
MnlI CCTC 1 cut(s) 254
MseI TTAA 5 cut(s) 174, 201, 248, 285, 327
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 167, 305
NcoI CCATGG 1 cut(s) 130
NdeII GATC 2 cut(s) 211, 270
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 3 cut(s) 25, 134, 337
NlaIV GGNNCC 1 cut(s) 298
PagI TCATGA 1 cut(s) 21
PaqCI CACCTGC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 270
PsyI GACNNNGTC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 5 cut(s) 174, 201, 248, 285, 327
Sau3AI GATC 2 cut(s) 211, 270
SduI GDGCHC 1 cut(s) 301
SetI ASST 7 cut(s) 75, 246, 256, 279, 283, 310, 319
SfaNI GCATC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 386
SsiI CCGC 2 cut(s) 95, 107
SspI AATATT 1 cut(s) 205
SspMI CTAG 2 cut(s) 278, 312
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 103
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 5 cut(s) 174, 201, 248, 285, 327
Tru9I TTAA 5 cut(s) 174, 201, 248, 285, 327
TscAI CASTG 1 cut(s) 356
TspDTI ATGAA 3 cut(s) 10, 17, 41
TspRI CASTG 1 cut(s) 356
Tth111I GACNNNGTC 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 136
VspI ATTAAT 1 cut(s) 327
XspI CTAG 2 cut(s) 278, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.