Rh5DG183700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
20360595 .. 20365044
4450 bp
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UTR
Exon/CDS
Intron
Rh5DG183700.1

Sequence Viewer

Length: 222 bp
ATGAGGATCTCGTCACTTTCCATTTGGGCTCAGTTCTTACTTACCTTTCAGAGAAGATTCAAAGCAACAAATGCCATTAACTTGGAAAATGCTGCATCCTTTGTCAATATTCTTGATCCTATTATTGATGATGCTGACAATGTGAACCTCTTAAAGCCTGAAGGATTACTGAAAATCTTCTCCTTCTTTGTTGGAACATTTGGGAGGCGAGGAATAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.26

Weight (kDa)

9.68

Isoelectric Point (pI)

24.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020605)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 14, 110
AcuI CTGAAG 1 cut(s) 180
AgsI TTSAA 1 cut(s) 61
AlwI GGATC 2 cut(s) 14, 110
ApeKI GCWGC 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmsI GCATC 2 cut(s) 104, 121
BseGI GGATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 6, 115
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 2 cut(s) 14, 110
BssMI GATC 2 cut(s) 6, 115
BstAPI GCANNNNNTGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 2 cut(s) 9, 118
BstMBI GATC 2 cut(s) 6, 115
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 1 cut(s) 6
BtsCI GGATG 1 cut(s) 95
CviJI RGCY 2 cut(s) 29, 157
CviKI_1 RGCY 2 cut(s) 29, 157
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 8, 117
DpnII GATC 2 cut(s) 6, 115
Eco24I GRGCYC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
HinfI GANTC 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 155, 193
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 30
Kzo9I GATC 2 cut(s) 6, 115
LpnPI CCDG 1 cut(s) 171
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 2 cut(s) 104, 121
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 8, 117
MboI GATC 2 cut(s) 6, 115
MboII GAAGA 2 cut(s) 66, 169
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 3 cut(s) 158, 198, 203
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 2 cut(s) 78, 152
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 2 cut(s) 6, 115
NmuCI GTSAC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 6
SaqAI TTAA 2 cut(s) 78, 152
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 2 cut(s) 6, 115
SduI GDGCHC 1 cut(s) 31
SetI ASST 2 cut(s) 47, 150
SfaNI GCATC 2 cut(s) 104, 121
SgeI CNNG 4 cut(s) 22, 94, 125, 170
SspI AATATT 1 cut(s) 109
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 2 cut(s) 78, 152
Tru9I TTAA 2 cut(s) 78, 152
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.