Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020607

Physical Location & Seq

Genomic Coordinates Reverse (-)

29780030 .. 29780638

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19017

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAAAATCTGCTGTATCTCAGTTTCAGTGATTTACCCTACCATCTCAAATCTTGTTTCTTGTATCTGAGCATGTTTCCTGATCACTACAAAATCGACCATATGAGAATAATTCAATTGTGGTTGGCTGAAGGATTTGTCAGAAAAAGCCAAGGAATGACACCGGAAGAAGTTGCAGAGGGTTACCTCAGAGAGCTATTGCACAGAAGTTTGGTTCATGCAGCAGAAACAGAAACTGATGGGAGAATTAAATCATATTACATCCATGATCTTTTATGTGAGATTGCAATTTTGGAGTCTAGAGAGCAAAACTTTGCAGCAATAGGAAAAGAGCATGGTACAATTTTACCTGCAAAAGTTCGACGACTCTCAATTGTTGACGTACTGCCAAATGTACAACATACAAGGACAACATCTCAACTTCGTTCTTTGCTCATTATTGGGGTAGAAAAATCAACTACTGATTTTTCCGTACCAATATTGTTTCCTAATGGTCTTCAGTTGCTTACTGTACTAGACTTGGAAGGTGCACATTTGGAGAAGTTTCCAAGAGAAGTTGTCAAGCTTCTTCTTCTCAAGTATCTTAGCCACGAGAAATGTGCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

202

Amino Acids

23.19

Weight (kDa)

6.79

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	25 - 96	3.6e-21	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020607)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0212521
rosa_multiflora	Rmu_co8306437.1_g000001 Rmu_co8407683.1_g000001 Rmu_co8446823.1_g000001
rosa_rugosa	Rorug07G0135000
rosa_samantha	Rh7CG284800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AcuI	CTGAAG	2 cut(s)	150, 482
AfaI	GTAC	5 cut(s)	340, 384, 396, 474, 513
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	2 cut(s)	196, 565
AluI	AGCT	2 cut(s)	196, 565
Alw21I	GWGCWC	1 cut(s)	532
Alw44I	GTGCAC	1 cut(s)	528
AlwNI	CAGNNNCTG	1 cut(s)	236
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	2 cut(s)	221, 317
BaeGI	GKGCMC	1 cut(s)	532
BauI	CACGAG	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	233, 329
BccI	CCATC	2 cut(s)	51, 233
BcgI	CGANNNNNNTGC	1 cut(s)	581
BclI	TGATCA	1 cut(s)	82
BfaI	CTAG	2 cut(s)	300, 515
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	222, 318
BlsI	GCNGC	2 cut(s)	223, 319
BpiI	GAAGAC	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	261
BseMII	CTCAG	3 cut(s)	34, 59, 202
BseNI	ACTGG	1 cut(s)	603
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	2 cut(s)	233, 329
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp1407I	TGTACA	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	82, 268
BspCNI	CTCAG	3 cut(s)	33, 60, 201
BspMI	ACCTGC	1 cut(s)	358
BsrGI	TGTACA	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	603
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	82, 268
BssSI	CACGAG	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	151
Bst2BI	CACGAG	1 cut(s)	590
Bst4CI	ACNGT	1 cut(s)	511
BstAUI	TGTACA	1 cut(s)	394
BstDEI	CTNAG	4 cut(s)	20, 68, 188, 584
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	85, 271
BstMBI	GATC	2 cut(s)	82, 268
BstNSI	RCATGY	1 cut(s)	76
BstPI	GGTNACC	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	532
BstV1I	GCAGC	2 cut(s)	233, 329
BstV2I	GAAGAC	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	358
CaiI	CAGNNNCTG	1 cut(s)	236
Csp6I	GTAC	5 cut(s)	339, 383, 395, 473, 512
CviAII	CATG	4 cut(s)	73, 218, 266, 335
CviJI	RGCY	5 cut(s)	128, 150, 196, 565, 588
CviKI_1	RGCY	5 cut(s)	128, 150, 196, 565, 588
CviQI	GTAC	5 cut(s)	339, 383, 395, 473, 512
DdeI	CTNAG	4 cut(s)	20, 68, 188, 584
DpnI	GATC	2 cut(s)	84, 270
DpnII	GATC	2 cut(s)	82, 268
Eco130I	CCWWGG	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	150, 482
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	4 cut(s)	76, 221, 269, 338
FaiI	YATR	9 cut(s)	74, 102, 104, 219, 256, 267, 277, 336, 402
FatI	CATG	4 cut(s)	72, 217, 265, 334
FauNDI	CATATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	222, 318
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	222, 318
FspBI	CTAG	2 cut(s)	300, 515
GluI	GCNGC	2 cut(s)	222, 318
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	4 cut(s)	76, 221, 269, 338
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	296, 366
HpaII	CCGG	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	379, 530
Hpy188I	TCNGA	3 cut(s)	69, 143, 191
Hpy188III	TCNNGA	2 cut(s)	80, 300
Hpy8I	GTNNAC	2 cut(s)	379, 530
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	2 cut(s)	125, 518
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	7 cut(s)	176, 202, 221, 287, 317, 353, 530
HpyF3I	CTNAG	4 cut(s)	20, 68, 188, 584
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	4 cut(s)	76, 221, 269, 338
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 268
LpnPI	CCDG	3 cut(s)	93, 177, 363
Lsp1109I	GCAGC	2 cut(s)	233, 329
MaeI	CTAG	2 cut(s)	300, 515
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	2 cut(s)	84, 270
MboI	GATC	2 cut(s)	82, 268
MboII	GAAGA	4 cut(s)	179, 488, 560, 563
MfeI	CAATTG	2 cut(s)	116, 372
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	6 cut(s)	111, 116, 246, 288, 342, 372
MlyI	GAGTC	2 cut(s)	305, 360
MnlI	CCTC	2 cut(s)	172, 197
MseI	TTAA	1 cut(s)	249
MspI	CCGG	1 cut(s)	164
MunI	CAATTG	2 cut(s)	116, 372
NdeI	CATATG	1 cut(s)	102
NdeII	GATC	2 cut(s)	82, 268
NlaIII	CATG	4 cut(s)	76, 221, 269, 338
NspI	RCATGY	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	223, 319
PleI	GAGTC	2 cut(s)	304, 360
PpsI	GAGTC	2 cut(s)	304, 360
PspEI	GGTNACC	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	236
RsaI	GTAC	5 cut(s)	340, 384, 396, 474, 513
RsaNI	GTAC	5 cut(s)	339, 383, 395, 473, 512
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	222, 318
Sau3AI	GATC	2 cut(s)	82, 268
SchI	GAGTC	2 cut(s)	305, 360
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	6 cut(s)	189, 198, 352, 384, 529, 567
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	6 cut(s)	111, 116, 246, 288, 342, 372
SspI	AATATT	1 cut(s)	480
SspMI	CTAG	2 cut(s)	300, 515
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	96, 361
TasI	AATT	6 cut(s)	111, 116, 246, 288, 342, 372
TatI	WGTACW	2 cut(s)	394, 511
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	2 cut(s)	221, 317
TspDTI	ATGAA	2 cut(s)	17, 206
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	528
XbaI	TCTAGA	1 cut(s)	299
XceI	RCATGY	1 cut(s)	76
XspI	CTAG	2 cut(s)	300, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.