Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8306437.1

Orthogroup ID

OG0020607

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 867

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8306437.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 866 bp

atgaaatgcgggggactgccccttgcaattgtggccatcagcgctgtactagctttaaaagacaagagaaatgtggatgattgggctgctgtttgtggcagtattggagctgaaatagaaggaaatgatcaacttgacaacatgaaaaaattgctgtatctcagttacagtgatttaccttaccatctgaaatcatgtttcttgtatctgagcatctttcctgatctctacaaaattgagcatatgagattgattcggttatggttagctgaaggatttgttattggaaaagagggaaggacaccagaagaagttgctgagagttaccttagagagttattggacagaagtttgattcaagcagcagaaacatcaactgatgggagagttaaatcatatcgcatccatgatcttttacgggagattgtcattttgaagtctagagagcaaaattttgcagcaatagaaaaagagcacggtacaatgtggtctgagaaagttcgacgactatcaatagttaacacactgcagaatgtacatcaaaagaggacaccgtctcaacttcgttctctgctcgtttttggggtagaagattcacttactgatttttccataccaaaattgtttcctacaggtgttcagctgcttacagtattagacttacaaggtgcacatctggatatgtttccaagagtggttgtcaagcttcttcttctcaggtatcttagcttgaggcatacaaaggtgaaacaaattccaggctccatcaagaagctacaaaacctggagaccttggatcttaaacactcgcaagttgttgaattaccttctgagattttgaatctcaagcgacttcgtcatctcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

289

Amino Acids

33.02

Weight (kDa)

9.11

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020607)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0212521
rosa_multiflora	Rmu_co8306437.1_g000001 Rmu_co8407683.1_g000001 Rmu_co8446823.1_g000001
rosa_rugosa	Rorug07G0135000
rosa_samantha	Rh7CG284800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	804
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	2 cut(s)	451, 753
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	3 cut(s)	48, 481, 537
AfeI	AGCGCT	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	359, 436, 821, 841
AjnI	CCWGG	2 cut(s)	757, 783
AluBI	AGCT	7 cut(s)	53, 110, 269, 643, 706, 729, 775
AluI	AGCT	7 cut(s)	53, 110, 269, 643, 706, 729, 775
Alw21I	GWGCWC	2 cut(s)	477, 673
Alw26I	GTCTC	2 cut(s)	561, 782
Alw44I	GTGCAC	1 cut(s)	669
AlwI	GGATC	1 cut(s)	804
Aor51HI	AGCGCT	1 cut(s)	43
AoxI	GGCC	1 cut(s)	33
ApaLI	GTGCAC	1 cut(s)	669
ApeKI	GCWGC	4 cut(s)	86, 362, 458, 643
ApoI	RAATTY	2 cut(s)	451, 753
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	757
BaeGI	GKGCMC	1 cut(s)	673
BalI	TGGCCA	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	477, 673
BbvI	GCAGC	4 cut(s)	73, 374, 470, 630
BccI	CCATC	4 cut(s)	44, 192, 374, 773
BciT130I	CCWGG	2 cut(s)	759, 785
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	561, 782
BfaI	CTAG	2 cut(s)	50, 441
BfmI	CTRYAG	2 cut(s)	527, 630
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	4 cut(s)	87, 363, 459, 644
BlsI	GCNGC	4 cut(s)	88, 364, 460, 645
Bme1390I	CCNGG	2 cut(s)	759, 785
BmiI	GGNNCC	1 cut(s)	763
BmrFI	CCNGG	2 cut(s)	759, 785
BmsI	GCATC	2 cut(s)	222, 411
BpmI	CTGGAG	1 cut(s)	806
BpuEI	CTTGAG	2 cut(s)	751, 830
BsaI	GGTCTC	1 cut(s)	782
BsaJI	CCNNGG	1 cut(s)	792
BseBI	CCWGG	2 cut(s)	759, 785
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	2 cut(s)	82, 402
BseMII	CTCAG	6 cut(s)	175, 200, 309, 483, 730, 822
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	4 cut(s)	73, 374, 470, 630
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	477, 673
BslFI	GGGAC	1 cut(s)	27
BsmAI	GTCTC	2 cut(s)	561, 782
BsmBI	CGTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	782
Bsp1286I	GDGCHC	2 cut(s)	477, 673
Bsp1407I	TGTACA	1 cut(s)	535
Bsp143I	GATC	4 cut(s)	127, 223, 409, 796
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	6 cut(s)	174, 201, 310, 484, 729, 823
BspLI	GGNNCC	1 cut(s)	763
BspMAI	CTGCAG	1 cut(s)	531
BspPI	GGATC	1 cut(s)	804
BspTNI	GGTCTC	1 cut(s)	782
BsrGI	TGTACA	1 cut(s)	535
BssECI	CCNNGG	1 cut(s)	792
BssMI	GATC	4 cut(s)	127, 223, 409, 796
BssT1I	CCWWGG	1 cut(s)	792
Bst2UI	CCWGG	2 cut(s)	759, 785
Bst4CI	ACNGT	4 cut(s)	170, 479, 555, 652
BstAUI	TGTACA	1 cut(s)	535
BstDEI	CTNAG	8 cut(s)	161, 209, 318, 329, 492, 716, 725, 831
BstF5I	GGATG	2 cut(s)	82, 402
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	4 cut(s)	130, 226, 412, 799
BstMAI	GTCTC	2 cut(s)	561, 782
BstMBI	GATC	4 cut(s)	127, 223, 409, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 41, 50
BstNI	CCWGG	2 cut(s)	759, 785
BstSCI	CCNGG	2 cut(s)	757, 783
BstSFI	CTRYAG	2 cut(s)	527, 630
BstSLI	GKGCMC	1 cut(s)	673
BstV1I	GCAGC	4 cut(s)	73, 374, 470, 630
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	82, 402
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	2 cut(s)	175, 524
CfoI	GCGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	47, 480, 536
CviAII	CATG	3 cut(s)	142, 195, 407
CviQI	GTAC	3 cut(s)	47, 480, 536
DdeI	CTNAG	8 cut(s)	161, 209, 318, 329, 492, 716, 725, 831
DpnI	GATC	4 cut(s)	129, 225, 411, 798
DpnII	GATC	4 cut(s)	127, 223, 409, 796
DraI	TTTAAA	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	792
Eco31I	GGTCTC	1 cut(s)	782
Eco47III	AGCGCT	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	757, 783
EcoT14I	CCWWGG	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	792
Esp3I	CGTCTC	1 cut(s)	561
FaeI	CATG	3 cut(s)	145, 198, 410
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	3 cut(s)	141, 194, 406
FauI	CCCGC	1 cut(s)	2
FauNDI	CATATG	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	4 cut(s)	87, 363, 459, 644
FokI	GGATG	2 cut(s)	89, 389
Fsp4HI	GCNGC	4 cut(s)	87, 363, 459, 644
FspBI	CTAG	2 cut(s)	50, 441
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	87, 363, 459, 644
GsuI	CTGGAG	1 cut(s)	806
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	145, 198, 410
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	4 cut(s)	253, 355, 593, 841
HpaI	GTTAAC	1 cut(s)	520
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	2 cut(s)	520, 671
Hpy188I	TCNGA	4 cut(s)	189, 210, 493, 832
Hpy188III	TCNNGA	4 cut(s)	221, 441, 677, 769
Hpy8I	GTNNAC	2 cut(s)	520, 671
Hpy99I	CGWCG	1 cut(s)	507
HpyAV	CCTTC	4 cut(s)	113, 266, 291, 837
HpyCH4III	ACNGT	4 cut(s)	170, 479, 555, 652
HpyCH4V	TGCA	4 cut(s)	26, 458, 529, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 41, 50
HpyF3I	CTNAG	8 cut(s)	161, 209, 318, 329, 492, 716, 725, 831
Hsp92II	CATG	3 cut(s)	145, 198, 410
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	127
KspAI	GTTAAC	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	127, 223, 409, 796
LmnI	GCTCC	2 cut(s)	107, 767
LpnPI	CCDG	9 cut(s)	234, 318, 618, 662, 703, 744, 770, 771, 797
Lsp1109I	GCAGC	4 cut(s)	73, 374, 470, 630
LweI	GCATC	2 cut(s)	222, 411
MaeI	CTAG	2 cut(s)	50, 441
MaeIII	GTNAC	2 cut(s)	164, 323
MalI	GATC	4 cut(s)	129, 225, 411, 798
MboI	GATC	4 cut(s)	127, 223, 409, 796
MboII	GAAGA	4 cut(s)	320, 602, 701, 704
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	2 cut(s)	477, 673
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	7 cut(s)	27, 149, 234, 451, 620, 753, 821
MluNI	TGGCCA	1 cut(s)	35
MnlI	CCTC	3 cut(s)	286, 540, 726
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	4 cut(s)	56, 390, 519, 801
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	643
MspR9I	CCNGG	2 cut(s)	759, 785
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	759, 785
MwoI	GCNNNNNNNGC	3 cut(s)	32, 41, 50
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	4 cut(s)	127, 223, 409, 796
NlaIII	CATG	3 cut(s)	145, 198, 410
NlaIV	GGNNCC	1 cut(s)	763
PfeI	GAWTC	4 cut(s)	253, 355, 593, 841
PflFI	GACNNNGTC	2 cut(s)	553, 855
PkrI	GCNGC	4 cut(s)	88, 364, 460, 645
Psp6I	CCWGG	2 cut(s)	757, 783
PspGI	CCWGG	2 cut(s)	757, 783
PspN4I	GGNNCC	1 cut(s)	763
PstI	CTGCAG	1 cut(s)	531
PsuI	RGATCY	1 cut(s)	796
PsyI	GACNNNGTC	2 cut(s)	553, 855
PvuII	CAGCTG	1 cut(s)	643
RsaI	GTAC	3 cut(s)	48, 481, 537
RsaNI	GTAC	3 cut(s)	47, 480, 536
SaqAI	TTAA	4 cut(s)	56, 390, 519, 801
SatI	GCNGC	4 cut(s)	87, 363, 459, 644
Sau3AI	GATC	4 cut(s)	127, 223, 409, 796
ScrFI	CCNGG	2 cut(s)	759, 785
SduI	GDGCHC	2 cut(s)	477, 673
SfaNI	GCATC	2 cut(s)	222, 411
SfcI	CTRYAG	2 cut(s)	527, 630
SmlI	CTYRAG	2 cut(s)	730, 845
SmoI	CTYRAG	2 cut(s)	730, 845
Sse9I	AATT	7 cut(s)	27, 149, 234, 451, 620, 753, 821
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	50, 441
StyD4I	CCNGG	2 cut(s)	757, 783
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	4 cut(s)	170, 479, 555, 652
TaqI	TCGA	1 cut(s)	502
TasI	AATT	7 cut(s)	27, 149, 234, 451, 620, 753, 821
TatI	WGTACW	2 cut(s)	46, 535
TfiI	GAWTC	4 cut(s)	253, 355, 593, 841
Tru1I	TTAA	4 cut(s)	56, 390, 519, 801
Tru9I	TTAA	4 cut(s)	56, 390, 519, 801
TscAI	CASTG	2 cut(s)	175, 531
TseI	GCWGC	4 cut(s)	86, 362, 458, 643
TspDTI	ATGAA	2 cut(s)	17, 158
TspRI	CASTG	2 cut(s)	175, 531
Tth111I	GACNNNGTC	2 cut(s)	553, 855
VneI	GTGCAC	1 cut(s)	669
XapI	RAATTY	2 cut(s)	451, 753
XbaI	TCTAGA	1 cut(s)	440
XspI	CTAG	2 cut(s)	50, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.