Rh7CG284800

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0020607
Physical Location & Seq
Reverse (-)
28937833 .. 28944621
6789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG284800.1

Sequence Viewer

Length: 540 bp
ATGAAAAATCTGCTGTATCTCAGTTTCAGTGATTTACCCTACCATCTCAAATCTTGTTTCTTGTATCTGAGCATGTTTCCTGATCACTACAAAATCGACCATATGAGAATAATTCAATTGTGGTTGGCTGAAGGATTTGTCAGAAAAAGCCAAGGAATGACACCAGAAGAAGTTGCAGAGGGTTACCTCAGAGAGCTATTGCACAGAAGTTTGGTTCATGCAGCAGAAACAGAAACTGATGGGAGAATTAAATCATATTACATCCATGATCTTTTATGTGAGATTGCAATTTTGGAGTCTAGAGAGCAAAACTTTGCAGCAATAGGAAAAGAGCATGGTACAATTTTACCTGCAAAAGTTCGACGACTCTCAATTGTTGACGTACTGCCAAATGTACAACATACAAGGACAACATCTCAACTTCGTTCTTTGCTCATTTTTGGGACTGTTTTTAAGATGGAGTCGGCTGAAGCAGGATCCTCTAGTACATCTTCAACATTTGGCAAATCTGGTACATCTGGAACTGATACAAGCTTATGA

Protein Analysis

179

Amino Acids

20.19

Weight (kDa)

6.71

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 25 - 96 2.7e-21 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020607)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0212521
rosa_multiflora Rmu_co8306437.1_g000001 Rmu_co8407683.1_g000001 Rmu_co8446823.1_g000001
rosa_rugosa Rorug07G0135000
rosa_samantha Rh7CG284800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AclWI GGATC 2 cut(s) 471, 484
AcuI CTGAAG 2 cut(s) 150, 489
AfaI GTAC 5 cut(s) 340, 384, 396, 487, 514
AgsI TTSAA 2 cut(s) 116, 495
AluBI AGCT 2 cut(s) 196, 534
AluI AGCT 2 cut(s) 196, 534
AlwI GGATC 2 cut(s) 471, 484
AlwNI CAGNNNCTG 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 221, 317
BamHI GGATCC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 233, 329
BccI CCATC 3 cut(s) 51, 233, 451
BclI TGATCA 1 cut(s) 82
BfaI CTAG 2 cut(s) 300, 483
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 2 cut(s) 222, 318
BlsI GCNGC 2 cut(s) 223, 319
BmiI GGNNCC 1 cut(s) 478
BsaJI CCNNGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 261
BseMII CTCAG 3 cut(s) 34, 59, 202
BseXI GCAGC 2 cut(s) 233, 329
BslFI GGGAC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 457
Bsp1407I TGTACA 1 cut(s) 394
Bsp143I GATC 3 cut(s) 82, 268, 476
BspCNI CTCAG 3 cut(s) 33, 60, 201
BspLI GGNNCC 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 2 cut(s) 471, 484
BsrGI TGTACA 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 3 cut(s) 82, 268, 476
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 448
BstAUI TGTACA 1 cut(s) 394
BstDEI CTNAG 3 cut(s) 20, 68, 188
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 3 cut(s) 85, 271, 479
BstMBI GATC 3 cut(s) 82, 268, 476
BstNSI RCATGY 1 cut(s) 76
BstPI GGTNACC 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 233, 329
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 358
CaiI CAGNNNCTG 1 cut(s) 236
Csp6I GTAC 5 cut(s) 339, 383, 395, 486, 513
CviAII CATG 4 cut(s) 73, 218, 266, 335
CviJI RGCY 5 cut(s) 128, 150, 196, 467, 534
CviKI_1 RGCY 5 cut(s) 128, 150, 196, 467, 534
CviQI GTAC 5 cut(s) 339, 383, 395, 486, 513
DdeI CTNAG 3 cut(s) 20, 68, 188
DpnI GATC 3 cut(s) 84, 270, 478
DpnII GATC 3 cut(s) 82, 268, 476
Eco130I CCWWGG 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 150, 489
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 4 cut(s) 76, 221, 269, 338
FaqI GGGAC 1 cut(s) 457
FatI CATG 4 cut(s) 72, 217, 265, 334
FauNDI CATATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 222, 318
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 222, 318
FspBI CTAG 2 cut(s) 300, 483
GluI GCNGC 2 cut(s) 222, 318
Hin1II CATG 4 cut(s) 76, 221, 269, 338
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 532
HinfI GANTC 3 cut(s) 296, 366, 461
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 3 cut(s) 69, 143, 191
Hpy188III TCNNGA 3 cut(s) 80, 300, 519
Hpy8I GTNNAC 1 cut(s) 379
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 6 cut(s) 176, 202, 221, 287, 317, 353
HpyF3I CTNAG 3 cut(s) 20, 68, 188
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 4 cut(s) 76, 221, 269, 338
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 3 cut(s) 82, 268, 476
LpnPI CCDG 6 cut(s) 93, 177, 363, 459, 495, 504
Lsp1109I GCAGC 2 cut(s) 233, 329
MaeI CTAG 2 cut(s) 300, 483
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 182
MalI GATC 3 cut(s) 84, 270, 478
MboI GATC 3 cut(s) 82, 268, 476
MboII GAAGA 2 cut(s) 179, 483
MfeI CAATTG 2 cut(s) 116, 372
MflI RGATCY 1 cut(s) 476
MluCI AATT 6 cut(s) 111, 116, 246, 288, 342, 372
MlyI GAGTC 3 cut(s) 305, 360, 470
MnlI CCTC 3 cut(s) 172, 197, 490
MseI TTAA 2 cut(s) 249, 453
MunI CAATTG 2 cut(s) 116, 372
NdeI CATATG 1 cut(s) 102
NdeII GATC 3 cut(s) 82, 268, 476
NlaIII CATG 4 cut(s) 76, 221, 269, 338
NlaIV GGNNCC 1 cut(s) 478
NspI RCATGY 1 cut(s) 76
PkrI GCNGC 2 cut(s) 223, 319
PleI GAGTC 3 cut(s) 304, 360, 469
PpsI GAGTC 3 cut(s) 304, 360, 469
PspEI GGTNACC 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 5 cut(s) 340, 384, 396, 487, 514
RsaNI GTAC 5 cut(s) 339, 383, 395, 486, 513
SaqAI TTAA 2 cut(s) 249, 453
SatI GCNGC 2 cut(s) 222, 318
Sau3AI GATC 3 cut(s) 82, 268, 476
SchI GAGTC 3 cut(s) 305, 360, 470
SetI ASST 5 cut(s) 189, 198, 352, 384, 536
Sse9I AATT 6 cut(s) 111, 116, 246, 288, 342, 372
SspMI CTAG 2 cut(s) 300, 483
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 96, 361
TasI AATT 6 cut(s) 111, 116, 246, 288, 342, 372
TatI WGTACW 2 cut(s) 394, 485
Tru1I TTAA 2 cut(s) 249, 453
Tru9I TTAA 2 cut(s) 249, 453
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 221, 317
TspDTI ATGAA 2 cut(s) 17, 206
TspRI CASTG 1 cut(s) 34
XbaI TCTAGA 1 cut(s) 299
XceI RCATGY 1 cut(s) 76
XspI CTAG 2 cut(s) 300, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.