Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8407683.1

Orthogroup ID

OG0020607

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1213

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8407683.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atgatcaataatatcttcaaagttatccagaaaccggttcctgaagatgaagaagttgaaaccatggacgacaaccagctaagagagagaatcaaaaatttgctgcagaatagtaggtacctgattgttcttgatggtatatggcacataccggactgggatgccatcaatcatgtaatgccgaacaacaatcgtggtagtcgagtaatgctcactactcgatatgttaatgtagcctctgcctcttgcttggggaaccatgacatgttctaccgtttagagcccttatctccggaagattcatggactcttttctgcaggaagacatttcatggagagtcatgcccaccaaatttggaagaaatttgtcgatgcatccttatgaaatgcgagggactgccccttgcaattgtggccatcagcgctgtactagctttaaaagacaagagaaatgtggacgattgggctgctgtttgtggcagtattggagctgaaatagaaggaaatgatcaacttgacaacatggaaaaattgctgtctctcagttacagggatttaccataccatctgaaatcttgtttcttgtatctgagcatctttcctgatctctacaaaattgagcatatgagattaattcggttatggttagctgaaggatttgtttttggaaaagggggaaggacaccagaagaagttgcagagagttacctcagagagttattggatagaagtttgattcaagcagcagaaacatcaactgatgggagagttaaatcatatcgcatccatgatattttacgggagattgtcattacgaagtctagagagcaaaactttgcagcaattgcaaaagagcaaggtacaaagtggcctgagaaagttcgaagactatcggtagttaacacgctgcagaatatacatcaaaagaggacagcatcccgacttcgttctttgctcgtttttggggtagaagattcacttactgattttcccataccaaaattgtttcgtaccggtcttcagttgcttactgtattagacttagaaggtgcacatctggatatgtttccaagtgaggttgtcaagctttttcttctcaagtaccttagcttgaggcatacaaaggtgaaacaaattccaagctccatcaagaagctacaaaacctagagaccttggaccttaaacactcgcatgttgttgaattacctgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

404

Amino Acids

46.4

Weight (kDa)

6.87

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020607)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0212521
rosa_multiflora	Rmu_co8306437.1_g000001 Rmu_co8407683.1_g000001 Rmu_co8446823.1_g000001
rosa_rugosa	Rorug07G0135000
rosa_samantha	Rh7CG284800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	4 cut(s)	97, 352, 363, 1134
AcuI	CTGAAG	3 cut(s)	63, 672, 1004
AfaI	GTAC	5 cut(s)	119, 429, 862, 1012, 1103
AfeI	AGCGCT	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	264
AgeI	ACCGGT	2 cut(s)	34, 1013
AgsI	TTSAA	4 cut(s)	19, 59, 740, 1202
AluBI	AGCT	8 cut(s)	79, 434, 491, 650, 1087, 1110, 1143, 1156
AluI	AGCT	8 cut(s)	79, 434, 491, 650, 1087, 1110, 1143, 1156
Alw21I	GWGCWC	1 cut(s)	1054
Alw26I	GTCTC	2 cut(s)	543, 1163
Alw44I	GTGCAC	1 cut(s)	1050
Aor13HI	TCCGGA	1 cut(s)	292
Aor51HI	AGCGCT	1 cut(s)	424
AoxI	GGCC	2 cut(s)	414, 869
ApaLI	GTGCAC	1 cut(s)	1050
ApeKI	GCWGC	5 cut(s)	103, 467, 743, 839, 907
ApoI	RAATTY	4 cut(s)	97, 352, 363, 1134
AseI	ATTAAT	1 cut(s)	632
AsiGI	ACCGGT	2 cut(s)	34, 1013
Asp718I	GGTACC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	1177
AsuHPI	GGTGA	1 cut(s)	1138
AsuII	TTCGAA	1 cut(s)	883
AvaII	GGWCC	1 cut(s)	1177
BaeGI	GKGCMC	1 cut(s)	1054
BalI	TGGCCA	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	3 cut(s)	329, 892, 1010
Bbv12I	GWGCWC	1 cut(s)	1054
BbvI	GCAGC	5 cut(s)	90, 454, 755, 851, 894
BccI	CCATC	6 cut(s)	128, 173, 425, 573, 755, 1154
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BclI	TGATCA	2 cut(s)	3, 508
BcoDI	GTCTC	2 cut(s)	543, 1163
BfaI	CTAG	3 cut(s)	431, 822, 1166
BfmI	CTRYAG	3 cut(s)	104, 316, 908
BfoI	RGCGCY	1 cut(s)	426
BisI	GCNGC	5 cut(s)	104, 468, 744, 840, 908
BlsI	GCNGC	5 cut(s)	105, 469, 745, 841, 909
Bme18I	GGWCC	1 cut(s)	1177
BmgT120I	GGNCC	1 cut(s)	1177
BmiI	GGNNCC	3 cut(s)	39, 119, 257
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	6 cut(s)	151, 362, 384, 603, 792, 944
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	3 cut(s)	329, 892, 1010
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
Bpu10I	CCTNAGC	1 cut(s)	1106
Bpu14I	TTCGAA	1 cut(s)	883
BpuEI	CTTGAG	2 cut(s)	1082, 1132
BsaI	GGTCTC	1 cut(s)	1163
BsaJI	CCNNGG	2 cut(s)	63, 1173
BsaWI	WCCGGW	4 cut(s)	34, 151, 292, 1013
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	2 cut(s)	34, 1013
Bse1I	ACTGG	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	292
BseDI	CCNNGG	2 cut(s)	63, 1173
BseGI	GGATG	4 cut(s)	166, 375, 783, 935
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	4 cut(s)	556, 581, 724, 864
BseNI	ACTGG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	1054
BseXI	GCAGC	5 cut(s)	90, 454, 755, 851, 894
BshFI	GGCC	2 cut(s)	416, 871
BshNI	GGYRCC	1 cut(s)	117
BshTI	ACCGGT	2 cut(s)	34, 1013
BsiHKAI	GWGCWC	1 cut(s)	1054
BsiSI	CCGG	4 cut(s)	35, 152, 293, 1014
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	543, 1163
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	416, 871
Bso31I	GGTCTC	1 cut(s)	1163
Bsp119I	TTCGAA	1 cut(s)	883
Bsp1286I	GDGCHC	2 cut(s)	285, 1054
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	3, 508, 604
Bsp19I	CCATGG	1 cut(s)	63
BspANI	GGCC	2 cut(s)	416, 871
BspCNI	CTCAG	4 cut(s)	555, 582, 723, 865
BspEI	TCCGGA	1 cut(s)	292
BspLI	GGNNCC	3 cut(s)	39, 119, 257
BspMAI	CTGCAG	3 cut(s)	108, 320, 912
BspT104I	TTCGAA	1 cut(s)	883
BspT107I	GGYRCC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	1163
BsrFI	RCCGGY	2 cut(s)	34, 1013
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	2 cut(s)	34, 1013
BssECI	CCNNGG	2 cut(s)	63, 1173
BssMI	GATC	3 cut(s)	3, 508, 604
BssT1I	CCWWGG	2 cut(s)	63, 1173
Bst4CI	ACNGT	2 cut(s)	275, 1033
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstBI	TTCGAA	1 cut(s)	883
BstDEI	CTNAG	7 cut(s)	80, 542, 590, 710, 873, 1042, 1106
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	4 cut(s)	166, 375, 783, 935
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	3 cut(s)	6, 511, 607
BstMAI	GTCTC	2 cut(s)	543, 1163
BstMBI	GATC	3 cut(s)	3, 508, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 422, 431, 845
BstNSI	RCATGY	2 cut(s)	268, 1196
BstSFI	CTRYAG	3 cut(s)	104, 316, 908
BstSLI	GKGCMC	1 cut(s)	1054
BstV1I	GCAGC	5 cut(s)	90, 454, 755, 851, 894
BstV2I	GAAGAC	3 cut(s)	329, 892, 1010
BsuRI	GGCC	2 cut(s)	416, 871
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	4 cut(s)	166, 375, 783, 935
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	2 cut(s)	34, 1013
Cfr13I	GGNCC	1 cut(s)	1177
Csp6I	GTAC	5 cut(s)	118, 428, 861, 1011, 1102
CspAI	ACCGGT	2 cut(s)	34, 1013
CspCI	CAANNNNNGTGG	4 cut(s)	175, 210, 336, 371
CviQI	GTAC	5 cut(s)	118, 428, 861, 1011, 1102
DdeI	CTNAG	7 cut(s)	80, 542, 590, 710, 873, 1042, 1106
DpnI	GATC	3 cut(s)	5, 510, 606
DpnII	GATC	3 cut(s)	3, 508, 604
DraI	TTTAAA	1 cut(s)	438
EaeI	YGGCCR	1 cut(s)	414
Eco130I	CCWWGG	2 cut(s)	63, 1173
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	1163
Eco47I	GGWCC	1 cut(s)	1177
Eco47III	AGCGCT	1 cut(s)	424
Eco57I	CTGAAG	3 cut(s)	63, 672, 1004
EcoT14I	CCWWGG	2 cut(s)	63, 1173
EcoT22I	ATGCAT	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	63, 1173
FalI	AAGNNNNNCTT	2 cut(s)	963, 995
FaqI	GGGAC	1 cut(s)	408
FauNDI	CATATG	1 cut(s)	624
FbaI	TGATCA	2 cut(s)	3, 508
Fnu4HI	GCNGC	5 cut(s)	104, 468, 744, 840, 908
FokI	GGATG	4 cut(s)	173, 362, 770, 922
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	5 cut(s)	104, 468, 744, 840, 908
FspBI	CTAG	3 cut(s)	431, 822, 1166
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	5 cut(s)	104, 468, 744, 840, 908
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	416, 871
HapII	CCGG	4 cut(s)	35, 152, 293, 1014
HhaI	GCGC	1 cut(s)	425
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HindIII	AAGCTT	1 cut(s)	1085
HinfI	GANTC	6 cut(s)	90, 299, 307, 338, 736, 974
HpaI	GTTAAC	1 cut(s)	901
HpaII	CCGG	4 cut(s)	35, 152, 293, 1014
HphI	GGTGA	1 cut(s)	1138
Hpy166II	GTNNAC	3 cut(s)	457, 901, 1052
Hpy188I	TCNGA	3 cut(s)	570, 591, 713
Hpy188III	TCNNGA	9 cut(s)	28, 41, 131, 293, 602, 822, 939, 1058, 1150
Hpy8I	GTNNAC	3 cut(s)	457, 901, 1052
HpyAV	CCTTC	4 cut(s)	494, 647, 672, 1040
HpyCH4III	ACNGT	2 cut(s)	275, 1033
HpyCH4V	TGCA	9 cut(s)	106, 318, 375, 407, 698, 839, 848, 910, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 422, 431, 845
HpyF3I	CTNAG	7 cut(s)	80, 542, 590, 710, 873, 1042, 1106
HspAI	GCGC	1 cut(s)	423
Kpn2I	TCCGGA	1 cut(s)	292
KpnI	GGTACC	1 cut(s)	121
Ksp22I	TGATCA	2 cut(s)	3, 508
KspAI	GTTAAC	1 cut(s)	901
Kzo9I	GATC	3 cut(s)	3, 508, 604
LmnI	GCTCC	2 cut(s)	488, 1148
Lsp1109I	GCAGC	5 cut(s)	90, 454, 755, 851, 894
LweI	GCATC	6 cut(s)	151, 362, 384, 603, 792, 944
MaeI	CTAG	3 cut(s)	431, 822, 1166
MaeIII	GTNAC	2 cut(s)	545, 704
MalI	GATC	3 cut(s)	5, 510, 606
MboI	GATC	3 cut(s)	3, 508, 604
MfeI	CAATTG	2 cut(s)	408, 843
MhlI	GDGCHC	2 cut(s)	285, 1054
MlsI	TGGCCA	1 cut(s)	416
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	2 cut(s)	301, 347
MnlI	CCTC	7 cut(s)	247, 253, 385, 719, 921, 1069, 1107
Mox20I	TGGCCA	1 cut(s)	416
Mph1103I	ATGCAT	1 cut(s)	377
MroI	TCCGGA	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	6 cut(s)	228, 437, 632, 771, 900, 1182
MslI	CAYNNNNRTG	2 cut(s)	380, 1191
Msp20I	TGGCCA	1 cut(s)	416
MspI	CCGG	4 cut(s)	35, 152, 293, 1014
MunI	CAATTG	2 cut(s)	408, 843
MwoI	GCNNNNNNNGC	4 cut(s)	413, 422, 431, 845
NcoI	CCATGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	624
NdeII	GATC	3 cut(s)	3, 508, 604
NlaIV	GGNNCC	3 cut(s)	39, 119, 257
NsiI	ATGCAT	1 cut(s)	377
NspI	RCATGY	2 cut(s)	268, 1196
NspV	TTCGAA	1 cut(s)	883
PciI	ACATGT	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PfeI	GAWTC	4 cut(s)	90, 299, 736, 974
PinAI	ACCGGT	2 cut(s)	34, 1013
PkrI	GCNGC	5 cut(s)	105, 469, 745, 841, 909
PleI	GAGTC	2 cut(s)	301, 346
PpsI	GAGTC	2 cut(s)	301, 346
PscI	ACATGT	1 cut(s)	264
PshBI	ATTAAT	1 cut(s)	632
PspN4I	GGNNCC	3 cut(s)	39, 119, 257
PspPI	GGNCC	1 cut(s)	1177
PstI	CTGCAG	3 cut(s)	108, 320, 912
RsaI	GTAC	5 cut(s)	119, 429, 862, 1012, 1103
RsaNI	GTAC	5 cut(s)	118, 428, 861, 1011, 1102
RseI	CAYNNNNRTG	2 cut(s)	380, 1191
SaqAI	TTAA	6 cut(s)	228, 437, 632, 771, 900, 1182
SatI	GCNGC	5 cut(s)	104, 468, 744, 840, 908
Sau3AI	GATC	3 cut(s)	3, 508, 604
Sau96I	GGNCC	1 cut(s)	1177
SchI	GAGTC	2 cut(s)	301, 347
SduI	GDGCHC	2 cut(s)	285, 1054
SfaNI	GCATC	6 cut(s)	151, 362, 384, 603, 792, 944
SfcI	CTRYAG	3 cut(s)	104, 316, 908
SfuI	TTCGAA	1 cut(s)	883
SinI	GGWCC	1 cut(s)	1177
SmiMI	CAYNNNNRTG	2 cut(s)	380, 1191
SmlI	CTYRAG	2 cut(s)	1097, 1111
SmoI	CTYRAG	2 cut(s)	1097, 1111
SspMI	CTAG	3 cut(s)	431, 822, 1166
StyI	CCWWGG	2 cut(s)	63, 1173
TaaI	ACNGT	2 cut(s)	275, 1033
TaqI	TCGA	4 cut(s)	202, 220, 370, 883
TatI	WGTACW	1 cut(s)	427
TfiI	GAWTC	4 cut(s)	90, 299, 736, 974
Tru1I	TTAA	6 cut(s)	228, 437, 632, 771, 900, 1182
Tru9I	TTAA	6 cut(s)	228, 437, 632, 771, 900, 1182
TseI	GCWGC	5 cut(s)	103, 467, 743, 839, 907
TspDTI	ATGAA	4 cut(s)	63, 291, 320, 398
VneI	GTGCAC	1 cut(s)	1050
VpaK11BI	GGWCC	1 cut(s)	1177
VspI	ATTAAT	1 cut(s)	632
XapI	RAATTY	4 cut(s)	97, 352, 363, 1134
XbaI	TCTAGA	1 cut(s)	821
XceI	RCATGY	2 cut(s)	268, 1196
XspI	CTAG	3 cut(s)	431, 822, 1166
Zsp2I	ATGCAT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.