Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446823.1

Orthogroup ID

OG0020607

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1627

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446823.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

atgaaggaagaatccacacgccaggtggttcctatagttgggatgggaggactgggaaaaactaccttggtaaagcaattgtatgaggatgctaaagtcaaaaagcattttaaggtacatgcttggatcactgtctctcgatcattccagatgaataagcttcttagacacatgatccatcagatcttcgaagttatcagaaaaccagttcctcaagatgaagaaattgaaagcatggacgacaaccagctaagagagagaattaaaaaattgctgcagcatagtaggtacctgattgttctggatgatctatggaacagagcagactgggatgccatcaatcatgcaatgccaaacaacaatcgtggtagtcgagtaatgctcactactcgcaatgttaaggtagcctctgcctcttgcttgggaaaccttgagatgatctaccatttagaacccttatctccggaggattcttggactcttttctgtaagaagacatttcaaggagagtcatgccttccaaatttggagaaatattgtcgaagcatcttaagcaaatgtggaggactaccccttgcaattgtcgcaatcggcgctgttctagctacaaaagacaagacaaatgtagatgaatggactgctgtttatggaagtattggggctgaaattcaggaaaatgaccagcttgacaatatgaaaaaagtgctgtatctcagtttcagtgatttaccataccatctgaagtcatgtttcttgtatctgagcatctttcctgatatctacaaaattgatcatatgagattaattcgattatggttagctgaaggatttattatggaaactgaaggaaagacaccagaagaagttgcacaaagttaccttaaggagctgtgggacagaagtttgattcaagcaacagaaacagcaactgatgggcgagttaagtcctatcgcatccatgatcttttacgggagattatcattttaaagtctagagagcaaaattttgcagcaatagtgaaagagcaaggcacaatgtggtctgacaaagttcgacgactatcaatagttaatacattgcagaatgtacaaaagaagaggactccatctaaacttcgctctttgctcatctttggggtagaagattcactaaatgaattttccataccaaaattgtttccaacgggtcttcagctgctaactgtattagacttgcaaggtgcacatctacaggtgtttccaaaagaggttgtgaagctggtttttctcagataccttagcctgaggaatagcaaggtgaaacaaattccaagctccatcaagaagcttagaaacctagagactctcgacctcaaacactcccatgttgttgaattgcctgctgagattttgaatctcaagcaacttcgccatctcctggtgtatcgttatgaagttgagtcctatgcacgatttaatgccaaatatggagttaagcttcctgcaggaatatgtagcttgcaatctctccaaaagctttgttttatagaggcaaatcaatacagtggcgctttaatggcagagctagggagaatgaatcaactaaggaggttaggcattttgaagttgagaaaagaagatggggta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

542

Amino Acids

62.42

Weight (kDa)

9.31

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020607)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0212521
rosa_multiflora	Rmu_co8306437.1_g000001 Rmu_co8407683.1_g000001 Rmu_co8446823.1_g000001
rosa_rugosa	Rorug07G0135000
rosa_samantha	Rh7CG284800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	288
AccB7I	CCANNNNNTGG	1 cut(s)	1417
AccIII	TCCGGA	1 cut(s)	463
AclWI	GGATC	2 cut(s)	134, 169
AcsI	RAATTY	5 cut(s)	523, 666, 1003, 1157, 1305
AcuI	CTGAAG	4 cut(s)	761, 843, 864, 1175
AdeI	CACNNNGTG	1 cut(s)	1038
AfaI	GTAC	3 cut(s)	117, 290, 1089
AfiI	CCNNNNNNNGG	2 cut(s)	38, 1417
AflII	CTTAAG	2 cut(s)	550, 881
AgsI	TTSAA	6 cut(s)	230, 503, 911, 1373, 1393, 1603
AjnI	CCWGG	2 cut(s)	21, 1416
Alw21I	GWGCWC	1 cut(s)	1225
Alw26I	GTCTC	2 cut(s)	139, 1334
Alw44I	GTGCAC	1 cut(s)	1221
AlwI	GGATC	2 cut(s)	134, 169
AlwNI	CAGNNNCTG	1 cut(s)	929
Aor13HI	TCCGGA	1 cut(s)	463
ApaLI	GTGCAC	1 cut(s)	1221
ApeKI	GCWGC	4 cut(s)	274, 277, 1010, 1195
ApoI	RAATTY	5 cut(s)	523, 666, 1003, 1157, 1305
AseI	ATTAAT	1 cut(s)	803
Asp718I	GGTACC	1 cut(s)	288
AspLEI	GCGC	2 cut(s)	596, 1550
AsuHPI	GGTGA	1 cut(s)	1309
AsuII	TTCGAA	1 cut(s)	189
AxyI	CCTNAGG	1 cut(s)	1283
BaeGI	GKGCMC	1 cut(s)	1225
BanI	GGYRCC	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	500, 1181
Bbv12I	GWGCWC	1 cut(s)	1225
BbvI	GCAGC	4 cut(s)	261, 289, 1022, 1182
BccI	CCATC	9 cut(s)	37, 186, 344, 744, 926, 1114, 1325, 1419, 1613
BciT130I	CCWGG	2 cut(s)	23, 1418
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	2 cut(s)	139, 1334
BfaI	CTAG	4 cut(s)	602, 993, 1337, 1565
BfmI	CTRYAG	4 cut(s)	33, 275, 1229, 1482
BfoI	RGCGCY	2 cut(s)	597, 1551
BfrI	CTTAAG	2 cut(s)	550, 881
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	4 cut(s)	275, 278, 1011, 1196
BlsI	GCNGC	4 cut(s)	276, 279, 1012, 1197
Bme1390I	CCNGG	2 cut(s)	23, 1418
BmiI	GGNNCC	2 cut(s)	30, 290
BmrFI	CCNGG	2 cut(s)	23, 1418
BmrI	ACTGGG	2 cut(s)	62, 337
BmsI	GCATC	5 cut(s)	79, 322, 555, 774, 963
BmuI	ACTGGG	2 cut(s)	62, 337
BpiI	GAAGAC	2 cut(s)	500, 1181
BplI	GAGNNNNNCTC	2 cut(s)	366, 398
Bpu10I	CCTNAGC	1 cut(s)	1277
Bpu14I	TTCGAA	1 cut(s)	189
BpuEI	CTTGAG	3 cut(s)	198, 452, 1382
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 1417
Bse1I	ACTGG	3 cut(s)	57, 206, 332
Bse21I	CCTNAGG	1 cut(s)	1283
Bse3DI	GCAATG	3 cut(s)	354, 400, 1076
BseAI	TCCGGA	1 cut(s)	463
BseBI	CCWGG	2 cut(s)	23, 1418
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	5 cut(s)	48, 94, 310, 337, 954
BseLI	CCNNNNNNNGG	2 cut(s)	38, 1417
BseMI	GCAATG	3 cut(s)	354, 400, 1076
BseMII	CTCAG	5 cut(s)	727, 752, 1274, 1282, 1374
BseNI	ACTGG	3 cut(s)	57, 206, 332
BseSI	GKGCMC	1 cut(s)	1225
BseXI	GCAGC	4 cut(s)	261, 289, 1022, 1182
BshNI	GGYRCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	1225
BsiSI	CCGG	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	2 cut(s)	38, 1417
BsmAI	GTCTC	2 cut(s)	139, 1334
BsmFI	GGGAC	1 cut(s)	908
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	1225
Bsp13I	TCCGGA	1 cut(s)	463
Bsp1407I	TGTACA	1 cut(s)	1087
Bsp143I	GATC	8 cut(s)	126, 140, 174, 183, 307, 438, 790, 961
BspCNI	CTCAG	5 cut(s)	726, 753, 1275, 1281, 1375
BspEI	TCCGGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	30, 290
BspMAI	CTGCAG	2 cut(s)	279, 1486
BspPI	GGATC	2 cut(s)	134, 169
BspT104I	TTCGAA	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	288
BspTI	CTTAAG	2 cut(s)	550, 881
BsrDI	GCAATG	3 cut(s)	354, 400, 1076
BsrGI	TGTACA	1 cut(s)	1087
BsrI	ACTGG	3 cut(s)	57, 206, 332
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	8 cut(s)	126, 140, 174, 183, 307, 438, 790, 961
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	23, 1418
Bst4CI	ACNGT	3 cut(s)	133, 1204, 1544
Bst6I	CTCTTC	1 cut(s)	1091
BstAFI	CTTAAG	2 cut(s)	550, 881
BstAUI	TGTACA	1 cut(s)	1087
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	1380, 1499
BstF5I	GGATG	5 cut(s)	48, 94, 310, 337, 954
BstH2I	RGCGCY	2 cut(s)	597, 1551
BstHHI	GCGC	2 cut(s)	596, 1550
BstKTI	GATC	8 cut(s)	129, 143, 177, 186, 310, 441, 793, 964
BstMAI	GTCTC	2 cut(s)	139, 1334
BstMBI	GATC	8 cut(s)	126, 140, 174, 183, 307, 438, 790, 961
BstMWI	GCNNNNNNNGC	5 cut(s)	552, 584, 593, 602, 1556
BstNI	CCWGG	2 cut(s)	23, 1418
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	21, 1416
BstSFI	CTRYAG	4 cut(s)	33, 275, 1229, 1482
BstSLI	GKGCMC	1 cut(s)	1225
BstV1I	GCAGC	4 cut(s)	261, 289, 1022, 1182
BstV2I	GAAGAC	2 cut(s)	500, 1181
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	1283
BtsCI	GGATG	5 cut(s)	48, 94, 310, 337, 954
BtsIMutI	CAGTG	3 cut(s)	129, 727, 1549
Cac8I	GCNNGC	2 cut(s)	1380, 1499
CaiI	CAGNNNCTG	1 cut(s)	929
CfoI	GCGC	2 cut(s)	596, 1550
Csp6I	GTAC	3 cut(s)	116, 289, 1088
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	8 cut(s)	119, 172, 235, 344, 513, 747, 959, 1364
CviQI	GTAC	3 cut(s)	116, 289, 1088
DpnI	GATC	8 cut(s)	128, 142, 176, 185, 309, 440, 792, 963
DpnII	GATC	8 cut(s)	126, 140, 174, 183, 307, 438, 790, 961
DraI	TTTAAA	1 cut(s)	987
DraIII	CACNNNGTG	1 cut(s)	1038
Eam1104I	CTCTTC	1 cut(s)	1091
EarI	CTCTTC	1 cut(s)	1091
Eco130I	CCWWGG	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	778
Eco57I	CTGAAG	4 cut(s)	761, 843, 864, 1175
Eco81I	CCTNAGG	1 cut(s)	1283
EcoRII	CCWGG	2 cut(s)	21, 1416
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	8 cut(s)	122, 175, 238, 347, 516, 750, 962, 1367
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	8 cut(s)	118, 171, 234, 343, 512, 746, 958, 1363
FauNDI	CATATG	1 cut(s)	795
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	4 cut(s)	275, 278, 1011, 1196
FokI	GGATG	5 cut(s)	55, 101, 317, 344, 941
Fsp4HI	GCNGC	4 cut(s)	275, 278, 1011, 1196
FspBI	CTAG	4 cut(s)	602, 993, 1337, 1565
GlaI	GCGC	2 cut(s)	595, 1549
GluI	GCNGC	4 cut(s)	275, 278, 1011, 1196
HaeII	RGCGCY	2 cut(s)	597, 1551
HapII	CCGG	1 cut(s)	464
HhaI	GCGC	2 cut(s)	596, 1550
Hin1II	CATG	8 cut(s)	122, 175, 238, 347, 516, 750, 962, 1367
Hin6I	GCGC	2 cut(s)	594, 1548
HinP1I	GCGC	2 cut(s)	594, 1548
HindIII	AAGCTT	4 cut(s)	158, 1325, 1475, 1514
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	1 cut(s)	1309
Hpy166II	GTNNAC	1 cut(s)	1223
Hpy188I	TCNGA	6 cut(s)	183, 200, 741, 762, 1045, 1271
Hpy8I	GTNNAC	1 cut(s)	1223
Hpy99I	CGWCG	1 cut(s)	1059
HpyAV	CCTTC	3 cut(s)	527, 818, 839
HpyCH4III	ACNGT	3 cut(s)	133, 1204, 1544
HpyF10VI	GCNNNNNNNGC	5 cut(s)	552, 584, 593, 602, 1556
Hsp92II	CATG	8 cut(s)	122, 175, 238, 347, 516, 750, 962, 1367
HspAI	GCGC	2 cut(s)	594, 1548
Kpn2I	TCCGGA	1 cut(s)	463
KpnI	GGTACC	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	8 cut(s)	126, 140, 174, 183, 307, 438, 790, 961
LmnI	GCTCC	2 cut(s)	886, 1319
Lsp1109I	GCAGC	4 cut(s)	261, 289, 1022, 1182
LweI	GCATC	5 cut(s)	79, 322, 555, 774, 963
MaeI	CTAG	4 cut(s)	602, 993, 1337, 1565
MaeIII	GTNAC	1 cut(s)	875
MalI	GATC	8 cut(s)	128, 142, 176, 185, 309, 440, 792, 963
MboI	GATC	8 cut(s)	126, 140, 174, 183, 307, 438, 790, 961
MboII	GAAGA	8 cut(s)	20, 178, 233, 505, 872, 1108, 1154, 1181
MfeI	CAATTG	2 cut(s)	77, 579
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	1225
MlyI	GAGTC	5 cut(s)	472, 518, 1096, 1336, 1448
MmeI	TCCRAC	1 cut(s)	1205
MroI	TCCGGA	1 cut(s)	463
MslI	CAYNNNNRTG	1 cut(s)	1362
MspA1I	CMGCKG	1 cut(s)	1195
MspCI	CTTAAG	2 cut(s)	550, 881
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	2 cut(s)	23, 1418
MunI	CAATTG	2 cut(s)	77, 579
MvaI	CCWGG	2 cut(s)	23, 1418
MwoI	GCNNNNNNNGC	5 cut(s)	552, 584, 593, 602, 1556
NdeI	CATATG	1 cut(s)	795
NdeII	GATC	8 cut(s)	126, 140, 174, 183, 307, 438, 790, 961
NlaIII	CATG	8 cut(s)	122, 175, 238, 347, 516, 750, 962, 1367
NlaIV	GGNNCC	2 cut(s)	30, 290
NspI	RCATGY	1 cut(s)	122
NspV	TTCGAA	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PfeI	GAWTC	6 cut(s)	11, 470, 907, 1145, 1393, 1576
PflMI	CCANNNNNTGG	1 cut(s)	1417
PkrI	GCNGC	4 cut(s)	276, 279, 1012, 1197
PleI	GAGTC	5 cut(s)	472, 517, 1096, 1336, 1447
PpsI	GAGTC	5 cut(s)	472, 517, 1096, 1336, 1447
PshBI	ATTAAT	1 cut(s)	803
Psp6I	CCWGG	2 cut(s)	21, 1416
PspGI	CCWGG	2 cut(s)	21, 1416
PspN4I	GGNNCC	2 cut(s)	30, 290
PstI	CTGCAG	2 cut(s)	279, 1486
PstNI	CAGNNNCTG	1 cut(s)	929
PsuI	RGATCY	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	1195
RsaI	GTAC	3 cut(s)	117, 290, 1089
RsaNI	GTAC	3 cut(s)	116, 289, 1088
RseI	CAYNNNNRTG	1 cut(s)	1362
SatI	GCNGC	4 cut(s)	275, 278, 1011, 1196
Sau3AI	GATC	8 cut(s)	126, 140, 174, 183, 307, 438, 790, 961
SbfI	CCTGCAGG	1 cut(s)	1486
SchI	GAGTC	5 cut(s)	472, 518, 1096, 1336, 1448
ScrFI	CCNGG	2 cut(s)	23, 1418
SdaI	CCTGCAGG	1 cut(s)	1486
SduI	GDGCHC	1 cut(s)	1225
SfaNI	GCATC	5 cut(s)	79, 322, 555, 774, 963
SfcI	CTRYAG	4 cut(s)	33, 275, 1229, 1482
SfuI	TTCGAA	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	1362
SmlI	CTYRAG	5 cut(s)	213, 431, 550, 881, 1397
SmoI	CTYRAG	5 cut(s)	213, 431, 550, 881, 1397
Sse8387I	CCTGCAGG	1 cut(s)	1486
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	4 cut(s)	602, 993, 1337, 1565
StyD4I	CCNGG	2 cut(s)	21, 1416
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	133, 1204, 1544
TaqI	TCGA	7 cut(s)	139, 189, 373, 541, 808, 1054, 1347
TatI	WGTACW	1 cut(s)	1087
TfiI	GAWTC	6 cut(s)	11, 470, 907, 1145, 1393, 1576
TscAI	CASTG	3 cut(s)	136, 727, 1549
TseI	GCWGC	4 cut(s)	274, 277, 1010, 1195
TspDTI	ATGAA	8 cut(s)	17, 167, 234, 645, 710, 1170, 1446, 1589
TspRI	CASTG	3 cut(s)	136, 727, 1549
Van91I	CCANNNNNTGG	1 cut(s)	1417
Vha464I	CTTAAG	2 cut(s)	550, 881
VneI	GTGCAC	1 cut(s)	1221
VspI	ATTAAT	1 cut(s)	803
XapI	RAATTY	5 cut(s)	523, 666, 1003, 1157, 1305
XbaI	TCTAGA	1 cut(s)	992
XceI	RCATGY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XspI	CTAG	4 cut(s)	602, 993, 1337, 1565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.