Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021469

Physical Location & Seq

Genomic Coordinates Reverse (-)

39370333 .. 39370859

Gene Structure 527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCAGATTGGGGACCGGTGGTGATAATGGTTGTGTTGTTTATACTGTTAAGTCCAGGGCTACTGTTTCAGCTGCTGGGGAAGAGCAGAGTGGTAGAATCCATCTCCCTTGATGAAGCTGCAAGGTTATTACTTGGGGATGCACACAATGCATCCGTAATGAGAAGTAAAGTAAGGCGGATTTATGATATTGCAAATGTTTCGTCCTCCATGAATCTTATTGAAAAGGTAAAACTTGTAGAACATGTGATAGAGAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

87

Amino Acids

9.71

Weight (kDa)

8.11

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3339	PF11820	1 - 37	5.6e-14	Protein of unknown function (DUF3339)
WHD_E2F_TDP	PF02319	30 - 78	1.2e-08	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021469)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0220421
rosa_samantha	Rh2BG426400 Rh4BG117900 Rh4CG093700 Rh5AG484800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	244
AgeI	ACCGGT	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	73, 119
AluI	AGCT	2 cut(s)	73, 119
AlwNI	CAGNNNCTG	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	73, 119
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AsiGI	ACCGGT	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	60, 106
BccI	CCATC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BciT130I	CCWGG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	74, 120
BlsI	GCNGC	2 cut(s)	75, 121
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	2 cut(s)	130, 161
BsaJI	CCNNGG	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	145, 152
BseXI	GCAGC	2 cut(s)	60, 106
BseYI	CCCAGC	1 cut(s)	76
BshTI	ACCGGT	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	48, 66
Bst6I	CTCTTC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	145, 152
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	60, 106
BtsCI	GGATG	2 cut(s)	145, 152
CaiI	CAGNNNCTG	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	14
CspAI	ACCGGT	1 cut(s)	16
CviAII	CATG	2 cut(s)	211, 245
CviJI	RGCY	3 cut(s)	61, 73, 119
CviKI_1	RGCY	3 cut(s)	61, 73, 119
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	154
FaeI	CATG	2 cut(s)	214, 248
FaiI	YATR	4 cut(s)	44, 186, 212, 246
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	210, 244
Fnu4HI	GCNGC	2 cut(s)	74, 120
FokI	GGATG	2 cut(s)	139, 152
Fsp4HI	GCNGC	2 cut(s)	74, 120
GluI	GCNGC	2 cut(s)	74, 120
GsaI	CCCAGC	1 cut(s)	80
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	2 cut(s)	214, 248
HinfI	GANTC	2 cut(s)	98, 214
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	48, 66
HpyCH4V	TGCA	4 cut(s)	122, 143, 152, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	214, 248
LguI	GCTCTTC	1 cut(s)	77
LpnPI	CCDG	4 cut(s)	30, 42, 62, 69
Lsp1109I	GCAGC	2 cut(s)	60, 106
LweI	GCATC	2 cut(s)	130, 161
MboII	GAAGA	1 cut(s)	94
MnlI	CCTC	1 cut(s)	217
Mph1103I	ATGCAT	1 cut(s)	154
MseI	TTAA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	214, 248
NlaIV	GGNNCC	1 cut(s)	15
NsiI	ATGCAT	1 cut(s)	154
NspI	RCATGY	1 cut(s)	248
PciI	ACATGT	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	98, 214
PinAI	ACCGGT	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	75, 121
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	2 cut(s)	74, 120
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	4 cut(s)	75, 121, 128, 231
SfaNI	GCATC	2 cut(s)	130, 161
SinI	GGWCC	1 cut(s)	14
SsiI	CCGC	1 cut(s)	178
SspI	AATATT	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	48, 66
TfiI	GAWTC	2 cut(s)	98, 214
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseI	GCWGC	2 cut(s)	73, 119
TspDTI	ATGAA	2 cut(s)	129, 227
TspGWI	ACGGA	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	14
XceI	RCATGY	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.