Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0021469

Physical Location & Seq

Genomic Coordinates Reverse (-)

16965074 .. 16982535

Gene Structure 17462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG093700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGATTCAGGTTCTCACCATTGGATCTCTTTATCAGGATGATTCTGCTACACTTAGGAGTGCTGCTTCTGCCTGGCACGCTGAACTGGCACCGCTCCCGAAGCCCTTGCTTGTAGAATCCATCTCCCTTGATGAAGCTGCAAGGTTATTACTTGGGGATGCACACAATGCATCCGAAATGAGAACTAAAGTACGGCGGATTTATGATATTGCAAATGTTTCGTCCTCCATGAATCTTATTGAAAAGACCCACGCAGCAGATACAAGGAAGCCTGCATATAGATGGTTTCACCAAGTTATAAAGGAATTACTTCCAACTGTCTCTTACTCAAGGTTTTTCAACCTGTCTTTTGGTGAGCAATGTTACAAGCAAGGAGGATGTGGAGTGGTGGCTGTGGAGGAAGGCAATAGAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGAAGCATACTTGAATTGTCTAAAGGAAAGTGCAGATGTGGCTATGATAATTAATGTGGGGAAACCATCTTGGCTGCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

179

Amino Acids

19.83

Weight (kDa)

8.21

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	40 - 96	2.8e-10	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021469)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0220421
rosa_samantha	Rh2BG426400 Rh4BG117900 Rh4CG093700 Rh5AG484800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	94
AciI	CCGC	2 cut(s)	92, 196
AclWI	GGATC	1 cut(s)	31
AfaI	GTAC	1 cut(s)	192
AgsI	TTSAA	3 cut(s)	242, 340, 469
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	137, 438, 537
AluI	AGCT	3 cut(s)	137, 438, 537
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	31
ApeKI	GCWGC	5 cut(s)	62, 137, 254, 438, 529
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AseI	ATTAAT	1 cut(s)	507
Asp700I	GAANNNNTTC	1 cut(s)	309
AsuHPI	GGTGA	3 cut(s)	7, 281, 365
BanI	GGYRCC	1 cut(s)	88
BbvI	GCAGC	5 cut(s)	49, 124, 266, 425, 516
BccI	CCATC	3 cut(s)	128, 276, 529
BceAI	ACGGC	1 cut(s)	209
BcgI	CGANNNNNNTGC	4 cut(s)	88, 122, 201, 235
BciT130I	CCWGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	538
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	5 cut(s)	63, 138, 255, 439, 530
BlsI	GCNGC	5 cut(s)	64, 139, 256, 440, 531
Bme1390I	CCNGG	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	148, 179
BpuEI	CTTGAG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	73
BseGI	GGATG	4 cut(s)	43, 163, 170, 383
BseMI	GCAATG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	5 cut(s)	49, 124, 266, 425, 516
BsgI	GTGCAG	1 cut(s)	507
BshNI	GGYRCC	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	23, 449
BspACI	CCGC	2 cut(s)	92, 196
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	23, 449
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	319
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	78, 273
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	4 cut(s)	43, 163, 170, 383
BstKTI	GATC	2 cut(s)	26, 452
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	2 cut(s)	23, 449
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 77, 86, 100, 167, 494
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstV1I	GCAGC	5 cut(s)	49, 124, 266, 425, 516
BstX2I	RGATCY	2 cut(s)	23, 449
BstYI	RGATCY	2 cut(s)	23, 449
BtsCI	GGATG	4 cut(s)	43, 163, 170, 383
Cac8I	GCNNGC	2 cut(s)	78, 273
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	9 cut(s)	103, 137, 271, 392, 428, 438, 497, 529, 537
CviKI_1	RGCY	9 cut(s)	103, 137, 271, 392, 428, 438, 497, 529, 537
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	25, 451
DpnII	GATC	2 cut(s)	23, 449
EciI	GGCGGA	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	172
FaeI	CATG	1 cut(s)	232
FaiI	YATR	7 cut(s)	204, 230, 277, 279, 299, 463, 500
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	5 cut(s)	63, 138, 255, 439, 530
FokI	GGATG	4 cut(s)	50, 157, 170, 390
Fsp4HI	GCNGC	5 cut(s)	63, 138, 255, 439, 530
FspBI	CTAG	1 cut(s)	538
GluI	GCNGC	5 cut(s)	63, 138, 255, 439, 530
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	4 cut(s)	4, 41, 116, 232
HphI	GGTGA	3 cut(s)	7, 281, 365
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	35, 97
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	9 cut(s)	140, 161, 170, 212, 275, 418, 441, 488, 532
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 77, 86, 100, 167, 494
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	23, 449
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	6 cut(s)	20, 58, 71, 85, 285, 356
Lsp1109I	GCAGC	5 cut(s)	49, 124, 266, 425, 516
LweI	GCATC	2 cut(s)	148, 179
MaeI	CTAG	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	25, 451
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	2 cut(s)	23, 449
MboII	GAAGA	1 cut(s)	459
MflI	RGATCY	2 cut(s)	23, 449
MluCI	AATT	4 cut(s)	305, 413, 469, 504
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	3 cut(s)	235, 368, 391
Mph1103I	ATGCAT	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	6 cut(s)	68, 77, 86, 100, 167, 494
NdeII	GATC	2 cut(s)	23, 449
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	90
NsiI	ATGCAT	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	4 cut(s)	4, 41, 116, 232
PkrI	GCNGC	5 cut(s)	64, 139, 256, 440, 531
PshBI	ATTAAT	1 cut(s)	507
PsiI	TTATAA	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	90
PsuI	RGATCY	2 cut(s)	23, 449
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	5 cut(s)	63, 138, 255, 439, 530
Sau3AI	GATC	2 cut(s)	23, 449
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	7 cut(s)	12, 139, 146, 335, 345, 440, 539
SfaNI	GCATC	2 cut(s)	148, 179
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	4 cut(s)	305, 413, 469, 504
SsiI	CCGC	2 cut(s)	92, 196
SspMI	CTAG	1 cut(s)	538
StyD4I	CCNGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	319
TasI	AATT	4 cut(s)	305, 413, 469, 504
TfiI	GAWTC	4 cut(s)	4, 41, 116, 232
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TseI	GCWGC	5 cut(s)	62, 137, 254, 438, 529
TspDTI	ATGAA	2 cut(s)	147, 245
VspI	ATTAAT	1 cut(s)	507
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	538
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.