Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0021469

Physical Location & Seq

Genomic Coordinates Forward (+)

82913106 .. 82915050

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG484800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGATTCTGGAGGCCCTTCTGGTAGAATCCATCTCCCTTGATGAAGCTGCAAGGTTATTACTTGGGGATGCACACAATGCATCCGAAATGAGAACAGCCAAAGTAAGGCGGATTTATGATATTGCAAATGTTTCGTCCTCCATGAATCTTATTGAAAAGGTAAAACTTGTAGAACTTGTGATAGAGAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

64

Amino Acids

7.19

Weight (kDa)

5.24

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	9 - 54	9.7e-09	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021469)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0220421
rosa_samantha	Rh2BG426400 Rh4BG117900 Rh4CG093700 Rh5AG484800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspS9I	GGNCC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	13
BmsI	GCATC	2 cut(s)	58, 89
BpmI	CTGGAG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	73, 80
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	105
BsnI	GGCC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	73, 80
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	73, 80
Cfr13I	GGNCC	1 cut(s)	13
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	3 cut(s)	14, 47, 98
CviKI_1	RGCY	3 cut(s)	14, 47, 98
EciI	GGCGGA	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	82
FaeI	CATG	1 cut(s)	145
FaiI	YATR	2 cut(s)	117, 143
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	2 cut(s)	67, 80
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	3 cut(s)	4, 26, 145
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	26
HpyCH4V	TGCA	4 cut(s)	50, 71, 80, 125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	145
LpnPI	CCDG	1 cut(s)	5
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	58, 89
MnlI	CCTC	2 cut(s)	4, 148
Mph1103I	ATGCAT	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	82
PfeI	GAWTC	3 cut(s)	4, 26, 145
PkrI	GCNGC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	13
SatI	GCNGC	1 cut(s)	48
Sau96I	GGNCC	1 cut(s)	13
SetI	ASST	3 cut(s)	49, 56, 162
SfaNI	GCATC	2 cut(s)	58, 89
SgeI	CNNG	8 cut(s)	20, 32, 50, 63, 74, 154, 179, 188
SsiI	CCGC	1 cut(s)	109
SspI	AATATT	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	4, 26, 145
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	57, 158
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.