Histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr7g0220421 |
| rosa_samantha | Rh2BG426400 Rh4BG117900 Rh4CG093700 Rh5AG484800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 133 |
| AccB1I | GGYRCC | 1 cut(s) | 133 |
| AciI | CCGC | 1 cut(s) | 362 |
| AcsI | RAATTY | 1 cut(s) | 280 |
| AfaI | GTAC | 1 cut(s) | 135 |
| AgsI | TTSAA | 1 cut(s) | 91 |
| AjnI | CCWGG | 1 cut(s) | 201 |
| AluBI | AGCT | 1 cut(s) | 238 |
| AluI | AGCT | 1 cut(s) | 238 |
| ApeKI | GCWGC | 2 cut(s) | 169, 230 |
| ApoI | RAATTY | 1 cut(s) | 280 |
| Asp718I | GGTACC | 1 cut(s) | 133 |
| AspS9I | GGNCC | 1 cut(s) | 258 |
| AvaII | GGWCC | 1 cut(s) | 258 |
| BanI | GGYRCC | 1 cut(s) | 133 |
| BbvI | GCAGC | 2 cut(s) | 181, 217 |
| BccI | CCATC | 2 cut(s) | 249, 269 |
| BciT130I | CCWGG | 1 cut(s) | 203 |
| BglII | AGATCT | 1 cut(s) | 58 |
| BisI | GCNGC | 2 cut(s) | 170, 231 |
| BlsI | GCNGC | 2 cut(s) | 171, 232 |
| Bme1390I | CCNGG | 1 cut(s) | 203 |
| Bme18I | GGWCC | 1 cut(s) | 258 |
| BmgT120I | GGNCC | 1 cut(s) | 258 |
| BmiI | GGNNCC | 2 cut(s) | 135, 220 |
| BmrFI | CCNGG | 1 cut(s) | 203 |
| BpuEI | CTTGAG | 1 cut(s) | 360 |
| Bsa29I | ATCGAT | 1 cut(s) | 328 |
| BsaJI | CCNNGG | 1 cut(s) | 38 |
| BseBI | CCWGG | 1 cut(s) | 203 |
| BseCI | ATCGAT | 1 cut(s) | 328 |
| BseDI | CCNNGG | 1 cut(s) | 38 |
| BseGI | GGATG | 3 cut(s) | 10, 187, 260 |
| BseMII | CTCAG | 1 cut(s) | 196 |
| BseXI | GCAGC | 2 cut(s) | 181, 217 |
| BsgI | GTGCAG | 1 cut(s) | 188 |
| BshNI | GGYRCC | 1 cut(s) | 133 |
| BshVI | ATCGAT | 1 cut(s) | 328 |
| Bsp143I | GATC | 1 cut(s) | 58 |
| BspACI | CCGC | 1 cut(s) | 362 |
| BspCNI | CTCAG | 1 cut(s) | 195 |
| BspDI | ATCGAT | 1 cut(s) | 328 |
| BspLI | GGNNCC | 2 cut(s) | 135, 220 |
| BspT107I | GGYRCC | 1 cut(s) | 133 |
| BssECI | CCNNGG | 1 cut(s) | 38 |
| BssMI | GATC | 1 cut(s) | 58 |
| BssT1I | CCWWGG | 1 cut(s) | 38 |
| Bst2UI | CCWGG | 1 cut(s) | 203 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 239 |
| BstC8I | GCNNGC | 1 cut(s) | 240 |
| BstDEI | CTNAG | 1 cut(s) | 182 |
| BstF5I | GGATG | 3 cut(s) | 10, 187, 260 |
| BstKTI | GATC | 1 cut(s) | 61 |
| BstMBI | GATC | 1 cut(s) | 58 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 116, 239 |
| BstNI | CCWGG | 1 cut(s) | 203 |
| BstSCI | CCNGG | 1 cut(s) | 201 |
| BstV1I | GCAGC | 2 cut(s) | 181, 217 |
| BstX2I | RGATCY | 1 cut(s) | 58 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 268 |
| BstYI | RGATCY | 1 cut(s) | 58 |
| Bsu15I | ATCGAT | 1 cut(s) | 328 |
| BsuTUI | ATCGAT | 1 cut(s) | 328 |
| BtsCI | GGATG | 3 cut(s) | 10, 187, 260 |
| Cac8I | GCNNGC | 1 cut(s) | 240 |
| Cfr13I | GGNCC | 1 cut(s) | 258 |
| ClaI | ATCGAT | 1 cut(s) | 328 |
| Csp6I | GTAC | 1 cut(s) | 134 |
| CviAII | CATG | 1 cut(s) | 140 |
| CviJI | RGCY | 4 cut(s) | 37, 119, 230, 238 |
| CviKI_1 | RGCY | 4 cut(s) | 37, 119, 230, 238 |
| CviQI | GTAC | 1 cut(s) | 134 |
| DdeI | CTNAG | 1 cut(s) | 182 |
| DpnI | GATC | 1 cut(s) | 60 |
| DpnII | GATC | 1 cut(s) | 58 |
| Eco130I | CCWWGG | 1 cut(s) | 38 |
| Eco47I | GGWCC | 1 cut(s) | 258 |
| EcoRII | CCWGG | 1 cut(s) | 201 |
| EcoT14I | CCWWGG | 1 cut(s) | 38 |
| ErhI | CCWWGG | 1 cut(s) | 38 |
| FaeI | CATG | 1 cut(s) | 143 |
| FaiI | YATR | 9 cut(s) | 75, 85, 122, 141, 269, 323, 325, 345, 372 |
| FatI | CATG | 1 cut(s) | 139 |
| Fnu4HI | GCNGC | 2 cut(s) | 170, 231 |
| FokI | GGATG | 3 cut(s) | 17, 174, 267 |
| Fsp4HI | GCNGC | 2 cut(s) | 170, 231 |
| GluI | GCNGC | 2 cut(s) | 170, 231 |
| Hin1II | CATG | 1 cut(s) | 143 |
| HindIII | AAGCTT | 1 cut(s) | 236 |
| Hpy166II | GTNNAC | 1 cut(s) | 16 |
| Hpy8I | GTNNAC | 1 cut(s) | 16 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 116, 239 |
| HpyF3I | CTNAG | 1 cut(s) | 182 |
| Hsp92II | CATG | 1 cut(s) | 143 |
| KpnI | GGTACC | 1 cut(s) | 137 |
| Kzo9I | GATC | 1 cut(s) | 58 |
| LpnPI | CCDG | 3 cut(s) | 161, 188, 215 |
| Lsp1109I | GCAGC | 2 cut(s) | 181, 217 |
| MalI | GATC | 1 cut(s) | 60 |
| MboI | GATC | 1 cut(s) | 58 |
| MboII | GAAGA | 1 cut(s) | 68 |
| MflI | RGATCY | 1 cut(s) | 58 |
| MluCI | AATT | 4 cut(s) | 22, 126, 207, 280 |
| MnlI | CCTC | 4 cut(s) | 147, 245, 266, 300 |
| MseI | TTAA | 2 cut(s) | 129, 366 |
| MslI | CAYNNNNRTG | 2 cut(s) | 266, 292 |
| MspR9I | CCNGG | 1 cut(s) | 203 |
| MvaI | CCWGG | 1 cut(s) | 203 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 116, 239 |
| NdeII | GATC | 1 cut(s) | 58 |
| NlaIII | CATG | 1 cut(s) | 143 |
| NlaIV | GGNNCC | 2 cut(s) | 135, 220 |
| PkrI | GCNGC | 2 cut(s) | 171, 232 |
| Psp6I | CCWGG | 1 cut(s) | 201 |
| PspGI | CCWGG | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 2 cut(s) | 135, 220 |
| PspPI | GGNCC | 1 cut(s) | 258 |
| PsuI | RGATCY | 1 cut(s) | 58 |
| RsaI | GTAC | 1 cut(s) | 135 |
| RsaNI | GTAC | 1 cut(s) | 134 |
| RseI | CAYNNNNRTG | 2 cut(s) | 266, 292 |
| SaqAI | TTAA | 2 cut(s) | 129, 366 |
| SatI | GCNGC | 2 cut(s) | 170, 231 |
| Sau3AI | GATC | 1 cut(s) | 58 |
| Sau96I | GGNCC | 1 cut(s) | 258 |
| ScrFI | CCNGG | 1 cut(s) | 203 |
| SetI | ASST | 4 cut(s) | 135, 139, 240, 311 |
| SinI | GGWCC | 1 cut(s) | 258 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 266, 292 |
| SmlI | CTYRAG | 1 cut(s) | 375 |
| SmoI | CTYRAG | 1 cut(s) | 375 |
| Sse9I | AATT | 4 cut(s) | 22, 126, 207, 280 |
| SsiI | CCGC | 1 cut(s) | 362 |
| StyD4I | CCNGG | 1 cut(s) | 201 |
| StyI | CCWWGG | 1 cut(s) | 38 |
| TaqI | TCGA | 1 cut(s) | 328 |
| TasI | AATT | 4 cut(s) | 22, 126, 207, 280 |
| Tru1I | TTAA | 2 cut(s) | 129, 366 |
| Tru9I | TTAA | 2 cut(s) | 129, 366 |
| TseI | GCWGC | 2 cut(s) | 169, 230 |
| VpaK11BI | GGWCC | 1 cut(s) | 258 |
| XapI | RAATTY | 1 cut(s) | 280 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 209 |