Rh4BG117900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
19811251 .. 19814505
3255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG117900.1

Sequence Viewer

Length: 237 bp
ATGAGTTTCTATCAGATATTAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGAAGCATACTTGAATAGTCTAAAGGAAAGTGCAGATGTGGCTATGATAATTAACGTGGGGGAACCATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGTGGATTCTATGCTTATACCGATATTTCTCTTTGCATACATTTTGTGCAGGTGCGGTTAAACATACTCAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.7

Weight (kDa)

7.67

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021469)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0220421
rosa_samantha Rh2BG426400 Rh4BG117900 Rh4CG093700 Rh5AG484800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 200
Acc36I ACCTGC 1 cut(s) 200
AciI CCGC 1 cut(s) 215
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 2 cut(s) 33, 132
AluI AGCT 2 cut(s) 33, 132
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 33, 124
AspS9I GGNCC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 20, 111
BccI CCATC 3 cut(s) 124, 143, 163
BfuAI ACCTGC 1 cut(s) 200
BglII AGATCT 1 cut(s) 44
BisI GCNGC 2 cut(s) 34, 125
BlsI GCNGC 2 cut(s) 35, 126
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 213
BseGI GGATG 1 cut(s) 154
BseXI GCAGC 2 cut(s) 20, 111
BsgI GTGCAG 2 cut(s) 102, 228
BshFI GGCC 1 cut(s) 154
BsnI GGCC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 200
BssMI GATC 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 134
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 89, 133
BstV1I GCAGC 2 cut(s) 20, 111
BstX2I RGATCY 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 162
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 152
CviJI RGCY 6 cut(s) 23, 33, 92, 124, 132, 154
CviKI_1 RGCY 6 cut(s) 23, 33, 92, 124, 132, 154
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
FaiI YATR 6 cut(s) 58, 95, 172, 178, 198, 225
Fnu4HI GCNGC 2 cut(s) 34, 125
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 34, 125
GluI GCNGC 2 cut(s) 34, 125
HaeIII GGCC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 6 cut(s) 36, 83, 127, 136, 196, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 133
HpySE526I ACGT 1 cut(s) 105
Kzo9I GATC 1 cut(s) 44
LpnPI CCDG 1 cut(s) 195
Lsp1109I GCAGC 2 cut(s) 20, 111
MaeII ACGT 1 cut(s) 105
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 1 cut(s) 54
MflI RGATCY 1 cut(s) 44
MluCI AATT 1 cut(s) 99
MnlI CCTC 1 cut(s) 139
MseI TTAA 2 cut(s) 102, 219
MslI CAYNNNNRTG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 89, 133
NdeII GATC 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 114
PaqCI CACCTGC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 2 cut(s) 35, 126
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 2 cut(s) 102, 219
SatI GCNGC 2 cut(s) 34, 125
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 152
SetI ASST 4 cut(s) 35, 108, 134, 214
SgeI CNNG 7 cut(s) 60, 73, 118, 132, 145, 157, 222
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 1 cut(s) 99
SsiI CCGC 1 cut(s) 215
TaiI ACGT 1 cut(s) 108
TasI AATT 1 cut(s) 99
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 2 cut(s) 102, 219
Tru9I TTAA 2 cut(s) 102, 219
TseI GCWGC 2 cut(s) 33, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.