RchiOBHm_Chr7g0220921

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0017014
Physical Location & Seq
Forward (+)
41859048 .. 41862049
3002 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19772

Sequence Viewer

Length: 1089 bp
ATGAACCATACTAGGATCTTCTCTTATAAGAAGCCACAGATCCCCCCGAAACAAATTTCCTCACCTCCTTCAGCCAAAGAACTAAAGAAGCCCCGACACATTGAGATTTTGCATAAATTGGAAGCTCTTGATCTTGAGGATGATTTCTCCTTGAATTTGCTTGATTGGGGCAGCAACAATGTTGTTGCTATTGCTATTCAAGATGCAGTTTTTTTATGGAATGCTTCAAACAAATCGAGCACAGAAATTGAGTTGGGTGATCTTGTGACAAGCGTCAGCTGGGGTCCTGGTGCACGGCATATTACTATTGACTTGAGCAATTCCGATGTCCAATTATGGGATTGTGAGACTCGTCATCAGTTGGTAAGAACACTGAGAGGTTGCCACCGTGGAAGAGTAGGAGCACTAGCATGGAATAGTCACATTCTTACAACTGGGGGAAGGGATGGTTGTATTGTAAACAATGATGTAAGGGTGAAATCTCACATCGTGGAAAACTACAGGGGTCACCGGCAGGAGGTGTGTGGATTGAAGTGGTCATACTCAGGGCAGAATTTAGCTAGTGGAGGGAATGATAGTCGGGTATTCATATGGGACAGGTCTGCGGCAACCTCTGCAAGGCAGTCACAGTGGCTTCACAAGCTTGATGGCCATAGTGGAGCAGTCAAGGCCCTTGCTTGGTGCCCATTTCAAGGGAATTTGCTAGCCTCTGGTGGAGGTGAGGATGACCGGTGCATTAAGTTTTGGAATGCACACACAGGCTCGTGCTTGAATTCAATCGACACAGGCTCACATGTGACTGCTCTTCTGTGGAATCACCATGACCGGGAACTGTTGAGTTCTCACGGTTTTACCAAAAACCAGCTAATATTGTGGGACTACCCCTCAATGGTGAGGAGGACAGAAATCATTGGGCATACATCGAGGATTCTATTCATGACTCAGAGCCCGGATGGATGCACTGTGGCTTCTACAGCTGGTGGGGATGATGAGTCTATGATGTTATGGAATGTGTTTATGGAAGTCCCTAAGCCTGTGCGAAAAGAAGATCATCTGCCATTTGCTCACTCATTCTACCACGTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

362

Amino Acids

40.59

Weight (kDa)

7.33

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 40 - 336 3.7e-102 CDC20/Fizzy WD40 domain
Beta-prop_RIG_2nd PF23775 60 - 298 1.2e-06 RIG second beta-propeller
Beta-prop_EML_2 PF23414 61 - 211 1.8e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 61 - 161 1.6e-06 WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd PF25047 89 - 177 9.9e-06 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 89 - 205 1.5e-11 WDR5 beta-propeller domain
Beta-prop_Aladin PF25460 133 - 281 1.4e-06 Aladin seven-bladed propeller
WD40_Prp19 PF24814 139 - 337 2.4e-18 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 141 - 281 1.4e-15 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 144 - 280 6.1e-18 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 158 - 338 1.3e-09 G protein beta WD-40 repeat protein
Beta-prop_CAF1B_HIR1 PF24105 163 - 235 5.1e-07 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 165 - 199 3.1e-07 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 166 - 259 3.9e-06 TEP-1 second beta-propeller
EIF3I PF24805 168 - 281 8.9e-06 EIF3I
Beta-prop_THOC3 PF25174 170 - 279 2.4e-20 THOC3 beta-propeller domain
Beta-prop_WDR19_1st PF23389 177 - 321 3.8e-07 WDR19 first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 185 - 262 1.5e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5 PF25175 207 - 338 2.7e-10 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 265 - 338 8.3e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AccB1I GGYRCC 1 cut(s) 681
AciI CCGC 1 cut(s) 605
AclWI GGATC 2 cut(s) 23, 34
AcoI YGGCCR 1 cut(s) 649
AcsI RAATTY 5 cut(s) 54, 154, 553, 697, 772
AcuI CTGAAG 1 cut(s) 54
AdeI CACNNNGTG 1 cut(s) 490
AfiI CCNNNNNNNGG 7 cut(s) 337, 517, 618, 678, 692, 826, 889
AflIII ACRYGT 1 cut(s) 793
AgeI ACCGGT 1 cut(s) 729
AgsI TTSAA 7 cut(s) 154, 200, 228, 532, 692, 772, 777
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 6 cut(s) 125, 279, 560, 643, 865, 977
AluI AGCT 6 cut(s) 125, 279, 560, 643, 865, 977
Alw21I GWGCWC 3 cut(s) 242, 295, 406
Alw26I GTCTC 1 cut(s) 341
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 2 cut(s) 23, 34
AoxI GGCC 2 cut(s) 649, 669
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 5 cut(s) 54, 154, 553, 697, 772
AsiGI ACCGGT 1 cut(s) 729
AspS9I GGNCC 2 cut(s) 284, 670
AsuC2I CCSGG 2 cut(s) 827, 950
AsuHPI GGTGA 7 cut(s) 54, 269, 487, 500, 731, 809, 904
AsuNHI GCTAGC 1 cut(s) 703
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 2 cut(s) 295, 686
BalI TGGCCA 1 cut(s) 651
BanI GGYRCC 1 cut(s) 681
BanII GRGCYC 1 cut(s) 950
BarI GAAGNNNNNNTAC 2 cut(s) 524, 556
BauI CACGAG 1 cut(s) 763
Bbv12I GWGCWC 3 cut(s) 242, 295, 406
BbvI GCAGC 1 cut(s) 183
BccI CCATC 3 cut(s) 440, 641, 947
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 2 cut(s) 827, 950
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 4 cut(s) 12, 407, 561, 704
BfmI CTRYAG 2 cut(s) 499, 972
BisI GCNGC 2 cut(s) 172, 606
BlsI GCNGC 2 cut(s) 173, 607
Bme1390I CCNGG 3 cut(s) 288, 827, 950
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 284, 670
BmiI GGNNCC 2 cut(s) 285, 683
BmrFI CCNGG 3 cut(s) 288, 827, 950
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 2 cut(s) 193, 947
BmtI GCTAGC 1 cut(s) 707
BmuI ACTGGG 1 cut(s) 444
BoxI GACNNNNGTC 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 2 cut(s) 155, 334
BpuMI CCSGG 2 cut(s) 827, 950
BsaJI CCNNGG 1 cut(s) 388
BsaWI WCCGGW 1 cut(s) 729
Bsc4I CCNNNNNNNGG 7 cut(s) 337, 517, 618, 678, 692, 826, 889
Bse118I RCCGGY 2 cut(s) 510, 729
Bse1I ACTGG 1 cut(s) 439
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 6 cut(s) 145, 451, 730, 958, 962, 991
BseLI CCNNNNNNNGG 7 cut(s) 337, 517, 618, 678, 692, 826, 889
BseMII CTCAG 3 cut(s) 365, 558, 956
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 910
BseSI GKGCMC 2 cut(s) 295, 686
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 279
BshFI GGCC 2 cut(s) 651, 671
BshNI GGYRCC 1 cut(s) 681
BshTI ACCGGT 1 cut(s) 729
BsiHKAI GWGCWC 3 cut(s) 242, 295, 406
BsiSI CCGG 4 cut(s) 511, 730, 826, 950
BslFI GGGAC 3 cut(s) 608, 890, 1010
BslI CCNNNNNNNGG 7 cut(s) 337, 517, 618, 678, 692, 826, 889
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 3 cut(s) 608, 890, 1010
BsmI GAATGC 2 cut(s) 226, 754
BsnI GGCC 2 cut(s) 651, 671
Bsp1286I GDGCHC 5 cut(s) 242, 295, 406, 686, 950
Bsp143I GATC 5 cut(s) 15, 39, 130, 259, 1048
BspACI CCGC 1 cut(s) 605
BspANI GGCC 2 cut(s) 651, 671
BspCNI CTCAG 3 cut(s) 366, 557, 955
BspHI TCATGA 1 cut(s) 936
BspLI GGNNCC 2 cut(s) 285, 683
BspOI GCTAGC 1 cut(s) 707
BspPI GGATC 2 cut(s) 23, 34
BspQI GCTCTTC 1 cut(s) 810
BspT107I GGYRCC 1 cut(s) 681
BsrFI RCCGGY 2 cut(s) 510, 729
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 2 cut(s) 510, 729
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 5 cut(s) 15, 39, 130, 259, 1048
BssSI CACGAG 1 cut(s) 763
Bst2BI CACGAG 1 cut(s) 763
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 5 cut(s) 389, 630, 834, 848, 964
Bst6I CTCTTC 2 cut(s) 388, 810
BstAPI GCANNNNNTGC 1 cut(s) 614
BstC8I GCNNGC 1 cut(s) 705
BstDEI CTNAG 4 cut(s) 374, 544, 942, 1029
BstDSI CCRYGG 1 cut(s) 388
BstEII GGTNACC 1 cut(s) 506
BstENI CCTNNNNNAGG 1 cut(s) 616
BstF5I GGATG 6 cut(s) 145, 451, 730, 958, 962, 991
BstKTI GATC 5 cut(s) 18, 42, 133, 262, 1051
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 5 cut(s) 15, 39, 130, 259, 1048
BstMWI GCNNNNNNNGC 4 cut(s) 614, 640, 668, 974
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 797
BstPAI GACNNNNGTC 1 cut(s) 272
BstPI GGTNACC 1 cut(s) 506
BstSCI CCNGG 3 cut(s) 286, 825, 948
BstSFI CTRYAG 2 cut(s) 499, 972
BstSLI GKGCMC 2 cut(s) 295, 686
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 15, 39
BstYI RGATCY 2 cut(s) 15, 39
BsuRI GGCC 2 cut(s) 651, 671
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 6 cut(s) 145, 451, 730, 958, 962, 991
BtsIMutI CAGTG 3 cut(s) 371, 635, 960
Cac8I GCNNGC 1 cut(s) 705
CciI TCATGA 1 cut(s) 936
Cfr10I RCCGGY 2 cut(s) 510, 729
Cfr13I GGNCC 2 cut(s) 284, 670
CseI GACGC 1 cut(s) 262
CspAI ACCGGT 1 cut(s) 729
CspCI CAANNNNNGTGG 1 cut(s) 1067
CviAII CATG 4 cut(s) 411, 794, 821, 937
DdeI CTNAG 4 cut(s) 374, 544, 942, 1029
DpnI GATC 5 cut(s) 17, 41, 132, 261, 1050
DpnII GATC 5 cut(s) 15, 39, 130, 259, 1048
DraIII CACNNNGTG 1 cut(s) 490
EaeI YGGCCR 1 cut(s) 649
Eam1104I CTCTTC 2 cut(s) 388, 810
EarI CTCTTC 2 cut(s) 388, 810
Eco24I GRGCYC 1 cut(s) 950
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 54
Eco91I GGTNACC 1 cut(s) 506
EcoNI CCTNNNNNAGG 1 cut(s) 616
EcoO109I RGGNCCY 2 cut(s) 284, 670
EcoO65I GGTNACC 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 772
EcoRII CCWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 950
FaeI CATG 4 cut(s) 414, 797, 824, 940
FaqI GGGAC 3 cut(s) 608, 890, 1010
FatI CATG 4 cut(s) 410, 793, 820, 936
FauNDI CATATG 1 cut(s) 590
Fnu4HI GCNGC 2 cut(s) 172, 606
FokI GGATG 6 cut(s) 152, 458, 737, 965, 969, 998
FriOI GRGCYC 1 cut(s) 950
Fsp4HI GCNGC 2 cut(s) 172, 606
FspBI CTAG 4 cut(s) 12, 407, 561, 704
GluI GCNGC 2 cut(s) 172, 606
GsaI CCCAGC 1 cut(s) 283
HaeIII GGCC 2 cut(s) 651, 671
HapII CCGG 4 cut(s) 511, 730, 826, 950
HgaI GACGC 1 cut(s) 262
Hin1II CATG 4 cut(s) 414, 797, 824, 940
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 5 cut(s) 349, 814, 928, 940, 992
HpaII CCGG 4 cut(s) 511, 730, 826, 950
HphI GGTGA 7 cut(s) 54, 269, 487, 500, 731, 809, 904
Hpy166II GTNNAC 2 cut(s) 293, 460
Hpy188I TCNGA 2 cut(s) 325, 945
Hpy188III TCNNGA 4 cut(s) 128, 134, 200, 937
Hpy8I GTNNAC 2 cut(s) 293, 460
HpyAV CCTTC 2 cut(s) 78, 435
HpyCH4III ACNGT 5 cut(s) 389, 630, 834, 848, 964
HpyCH4IV ACGT 1 cut(s) 1080
HpyCH4V TGCA 7 cut(s) 112, 206, 293, 617, 735, 752, 960
HpyF10VI GCNNNNNNNGC 4 cut(s) 614, 640, 668, 974
HpyF3I CTNAG 4 cut(s) 374, 544, 942, 1029
HpySE526I ACGT 1 cut(s) 1080
Hsp92II CATG 4 cut(s) 414, 797, 824, 940
Kzo9I GATC 5 cut(s) 15, 39, 130, 259, 1048
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 2 cut(s) 401, 659
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 2 cut(s) 193, 947
MaeI CTAG 4 cut(s) 12, 407, 561, 704
MaeII ACGT 1 cut(s) 1080
MaeIII GTNAC 5 cut(s) 265, 419, 506, 624, 796
MalI GATC 5 cut(s) 17, 41, 132, 261, 1050
MboI GATC 5 cut(s) 15, 39, 130, 259, 1048
MboII GAAGA 4 cut(s) 10, 405, 797, 1058
MflI RGATCY 2 cut(s) 15, 39
MhlI GDGCHC 5 cut(s) 242, 295, 406, 686, 950
MlsI TGGCCA 1 cut(s) 651
MluCI AATT 9 cut(s) 54, 116, 154, 246, 319, 332, 553, 697, 772
MluNI TGGCCA 1 cut(s) 651
MlyI GAGTC 3 cut(s) 343, 934, 1001
Mox20I TGGCCA 1 cut(s) 651
MscI TGGCCA 1 cut(s) 651
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 1 cut(s) 409
Msp20I TGGCCA 1 cut(s) 651
MspA1I CMGCKG 2 cut(s) 279, 977
MspI CCGG 4 cut(s) 511, 730, 826, 950
MspR9I CCNGG 3 cut(s) 288, 827, 950
Mva1269I GAATGC 2 cut(s) 226, 754
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 4 cut(s) 614, 640, 668, 974
NciI CCSGG 2 cut(s) 827, 950
NdeI CATATG 1 cut(s) 590
NdeII GATC 5 cut(s) 15, 39, 130, 259, 1048
NheI GCTAGC 1 cut(s) 703
NlaIII CATG 4 cut(s) 414, 797, 824, 940
NlaIV GGNNCC 2 cut(s) 285, 683
NmuCI GTSAC 5 cut(s) 265, 419, 506, 624, 796
NspI RCATGY 1 cut(s) 797
PagI TCATGA 1 cut(s) 936
PciI ACATGT 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 810
PctI GAATGC 2 cut(s) 226, 754
PfeI GAWTC 2 cut(s) 814, 928
PinAI ACCGGT 1 cut(s) 729
PkrI GCNGC 2 cut(s) 173, 607
PleI GAGTC 3 cut(s) 343, 934, 1000
PpsI GAGTC 3 cut(s) 343, 934, 1000
PpuMI RGGWCCY 1 cut(s) 284
PscI ACATGT 1 cut(s) 793
PshAI GACNNNNGTC 1 cut(s) 272
PsiI TTATAA 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 286
PspEI GGTNACC 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 285, 683
PspPI GGNCC 2 cut(s) 284, 670
PspPPI RGGWCCY 1 cut(s) 284
PsuI RGATCY 2 cut(s) 15, 39
PvuII CAGCTG 2 cut(s) 279, 977
RseI CAYNNNNRTG 1 cut(s) 409
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 1 cut(s) 738
SatI GCNGC 2 cut(s) 172, 606
Sau3AI GATC 5 cut(s) 15, 39, 130, 259, 1048
Sau96I GGNCC 2 cut(s) 284, 670
SchI GAGTC 3 cut(s) 343, 934, 1001
ScrFI CCNGG 3 cut(s) 288, 827, 950
SduI GDGCHC 5 cut(s) 242, 295, 406, 686, 950
SfaNI GCATC 2 cut(s) 193, 947
SfcI CTRYAG 2 cut(s) 499, 972
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 409
SmlI CTYRAG 2 cut(s) 134, 313
SmoI CTYRAG 2 cut(s) 134, 313
Sse9I AATT 9 cut(s) 54, 116, 154, 246, 319, 332, 553, 697, 772
SsiI CCGC 1 cut(s) 605
SspI AATATT 1 cut(s) 870
SspMI CTAG 4 cut(s) 12, 407, 561, 704
StyD4I CCNGG 3 cut(s) 286, 825, 948
TaaI ACNGT 5 cut(s) 389, 630, 834, 848, 964
TaiI ACGT 1 cut(s) 1083
TaqI TCGA 3 cut(s) 236, 780, 923
TasI AATT 9 cut(s) 54, 116, 154, 246, 319, 332, 553, 697, 772
TauI GCSGC 1 cut(s) 608
TfiI GAWTC 2 cut(s) 814, 928
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 3 cut(s) 378, 635, 967
TseFI GTSAC 5 cut(s) 265, 419, 506, 624, 796
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 5 cut(s) 265, 419, 506, 624, 796
TspDTI ATGAA 3 cut(s) 17, 577, 925
TspRI CASTG 3 cut(s) 378, 635, 967
VneI GTGCAC 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 284
XagI CCTNNNNNAGG 1 cut(s) 616
XapI RAATTY 5 cut(s) 54, 154, 553, 697, 772
XceI RCATGY 1 cut(s) 797
XspI CTAG 4 cut(s) 12, 407, 561, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.