Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002105.1

Orthogroup ID

OG0017014

Physical Location & Seq

Genomic Coordinates Reverse (-)

142265 .. 142933

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002105.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ctgagaggttgccatcgtggaagagtaggagcactagcatggaatagtcacattcttacaactgggggaagggatggttgtattgtaaacaatgatgtaagggtgaaatctcacatcgtggaaaactacaggggtcaccggcaggaggtgtgtggattgaagtggtcacactcagagcagaatttagctagtggagggaatgatagtcgggtcttcatatgggacaggtctgcggcaacctctgcaaggcagtcacagtggcttcataagcttgatggccacagtggagcagtcaaggcccttgcttggtgcccatttcaagggaatttgctagcctctggtggaggtgaggatgaccggtgcattaagttttggaatgcatgcacaggctcgtgcttgaattcaatcgacacaggctcacatgtgactgctcttctgtggaatcaccatgaccgggaactgttgagttctcacggttttaccaaaaaccagctaatattgtgggactacccctcaatggtgaggaggacagaaatcactgggcatacatcgaggattctattcatgactcagagcccggatggatgcactgtggcttctgcagctggtggggatgatgagtctgtgatgttatggaatgtgtttatggaagttcctaagcctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

222

Amino Acids

24.5

Weight (kDa)

7.79

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017014)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0220911 RchiOBHm_Chr7g0220921
rosa_laevigata	RLG00000002189 RLG00000002193
rosa_multiflora	Rmu_sc0002105.1_g000028
rosa_rugosa	Rorug07G0198300
rosa_samantha	Rh7AG338500 Rh7BG329300 Rh7BG340100 Rh7CG356600 Rh7DG337400
rosa_wichuraiana	Rw0G017150 Rw0G017180 Rw7G028800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	309
AciI	CCGC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	3 cut(s)	181, 325, 400
AdeI	CACNNNGTG	1 cut(s)	118
AfiI	CCNNNNNNNGG	6 cut(s)	145, 246, 306, 320, 454, 517
AflIII	ACRYGT	1 cut(s)	421
AgeI	ACCGGT	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	160, 320, 400, 405
AluBI	AGCT	4 cut(s)	188, 271, 493, 605
AluI	AGCT	4 cut(s)	188, 271, 493, 605
Alw21I	GWGCWC	1 cut(s)	34
AoxI	GGCC	2 cut(s)	277, 297
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	3 cut(s)	181, 325, 400
AsiGI	ACCGGT	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	2 cut(s)	455, 578
AsuHPI	GGTGA	5 cut(s)	115, 128, 359, 437, 532
AsuNHI	GCTAGC	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	578
BauI	CACGAG	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	4 cut(s)	21, 68, 269, 575
BcnI	CCSGG	2 cut(s)	455, 578
BfaI	CTAG	3 cut(s)	35, 189, 332
BfmI	CTRYAG	2 cut(s)	127, 600
BisI	GCNGC	2 cut(s)	234, 603
BlsI	GCNGC	2 cut(s)	235, 604
Bme1390I	CCNGG	2 cut(s)	455, 578
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	2 cut(s)	455, 578
BmrI	ACTGGG	2 cut(s)	72, 549
BmsI	GCATC	1 cut(s)	575
BmtI	GCTAGC	1 cut(s)	335
BmuI	ACTGGG	2 cut(s)	72, 549
BpiI	GAAGAC	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	657
BpuMI	CCSGG	2 cut(s)	455, 578
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	6 cut(s)	145, 246, 306, 320, 454, 517
Bse118I	RCCGGY	2 cut(s)	138, 357
Bse1I	ACTGG	2 cut(s)	67, 544
BseGI	GGATG	5 cut(s)	79, 358, 586, 590, 619
BseLI	CCNNNNNNNGG	6 cut(s)	145, 246, 306, 320, 454, 517
BseMII	CTCAG	2 cut(s)	186, 584
BseNI	ACTGG	2 cut(s)	67, 544
BseRI	GAGGAG	1 cut(s)	538
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	614
BshFI	GGCC	2 cut(s)	279, 299
BshNI	GGYRCC	1 cut(s)	309
BshTI	ACCGGT	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	4 cut(s)	139, 358, 454, 578
BslFI	GGGAC	2 cut(s)	236, 518
BslI	CCNNNNNNNGG	6 cut(s)	145, 246, 306, 320, 454, 517
BsmFI	GGGAC	2 cut(s)	236, 518
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	279, 299
Bsp1286I	GDGCHC	3 cut(s)	34, 314, 578
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	2 cut(s)	279, 299
BspCNI	CTCAG	2 cut(s)	185, 583
BspHI	TCATGA	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	311
BspMAI	CTGCAG	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	309
BsrFI	RCCGGY	2 cut(s)	138, 357
BsrI	ACTGG	2 cut(s)	67, 544
BssAI	RCCGGY	2 cut(s)	138, 357
BssSI	CACGAG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	391
Bst4CI	ACNGT	5 cut(s)	258, 284, 462, 476, 592
Bst6I	CTCTTC	2 cut(s)	16, 438
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	333, 382
BstDEI	CTNAG	4 cut(s)	2, 172, 570, 657
BstEII	GGTNACC	1 cut(s)	134
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	5 cut(s)	79, 358, 586, 590, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 268, 296, 602
BstNSI	RCATGY	2 cut(s)	384, 425
BstPI	GGTNACC	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	453, 576
BstSFI	CTRYAG	2 cut(s)	127, 600
BstSLI	GKGCMC	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	614
BstV2I	GAAGAC	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	279, 299
BtsCI	GGATG	5 cut(s)	79, 358, 586, 590, 619
BtsIMutI	CAGTG	4 cut(s)	263, 289, 537, 588
Cac8I	GCNNGC	2 cut(s)	333, 382
CciI	TCATGA	1 cut(s)	564
Cfr10I	RCCGGY	2 cut(s)	138, 357
Cfr13I	GGNCC	1 cut(s)	298
CspAI	ACCGGT	1 cut(s)	357
CviAII	CATG	5 cut(s)	39, 381, 422, 449, 565
DdeI	CTNAG	4 cut(s)	2, 172, 570, 657
DraIII	CACNNNGTG	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	2 cut(s)	16, 438
EarI	CTCTTC	2 cut(s)	16, 438
Eco24I	GRGCYC	1 cut(s)	578
Eco91I	GGTNACC	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	298
EcoO65I	GGTNACC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	578
FaeI	CATG	5 cut(s)	42, 384, 425, 452, 568
FaqI	GGGAC	2 cut(s)	236, 518
FatI	CATG	5 cut(s)	38, 380, 421, 448, 564
FauNDI	CATATG	1 cut(s)	218
Fnu4HI	GCNGC	2 cut(s)	234, 603
FokI	GGATG	5 cut(s)	86, 365, 593, 597, 626
FriOI	GRGCYC	1 cut(s)	578
Fsp4HI	GCNGC	2 cut(s)	234, 603
FspBI	CTAG	3 cut(s)	35, 189, 332
GluI	GCNGC	2 cut(s)	234, 603
HaeIII	GGCC	2 cut(s)	279, 299
HapII	CCGG	4 cut(s)	139, 358, 454, 578
Hin1II	CATG	5 cut(s)	42, 384, 425, 452, 568
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	4 cut(s)	442, 556, 568, 620
HpaII	CCGG	4 cut(s)	139, 358, 454, 578
HphI	GGTGA	5 cut(s)	115, 128, 359, 437, 532
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	175, 573
Hpy188III	TCNNGA	1 cut(s)	565
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	5 cut(s)	258, 284, 462, 476, 592
HpyCH4V	TGCA	6 cut(s)	245, 363, 380, 384, 588, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 268, 296, 602
HpyF3I	CTNAG	4 cut(s)	2, 172, 570, 657
Hsp92II	CATG	5 cut(s)	42, 384, 425, 452, 568
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	29, 287
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	1 cut(s)	575
MaeI	CTAG	3 cut(s)	35, 189, 332
MaeIII	GTNAC	5 cut(s)	47, 134, 165, 252, 424
MboII	GAAGA	3 cut(s)	33, 205, 425
MhlI	GDGCHC	3 cut(s)	34, 314, 578
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	3 cut(s)	181, 325, 400
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	2 cut(s)	562, 629
Mox20I	TGGCCA	1 cut(s)	279
Mph1103I	ATGCAT	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	37
Msp20I	TGGCCA	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	605
MspI	CCGG	4 cut(s)	139, 358, 454, 578
MspR9I	CCNGG	2 cut(s)	455, 578
Mva1269I	GAATGC	1 cut(s)	382
MwoI	GCNNNNNNNGC	4 cut(s)	242, 268, 296, 602
NciI	CCSGG	2 cut(s)	455, 578
NdeI	CATATG	1 cut(s)	218
NheI	GCTAGC	1 cut(s)	331
NlaIII	CATG	5 cut(s)	42, 384, 425, 452, 568
NlaIV	GGNNCC	1 cut(s)	311
NmuCI	GTSAC	5 cut(s)	47, 134, 165, 252, 424
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	2 cut(s)	384, 425
PaeI	GCATGC	1 cut(s)	384
PagI	TCATGA	1 cut(s)	564
PciI	ACATGT	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	442, 556
PinAI	ACCGGT	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	235, 604
PleI	GAGTC	2 cut(s)	562, 628
PpsI	GAGTC	2 cut(s)	562, 628
PscI	ACATGT	1 cut(s)	421
PspEI	GGTNACC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	604
PvuII	CAGCTG	1 cut(s)	605
RseI	CAYNNNNRTG	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	234, 603
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	2 cut(s)	562, 629
ScrFI	CCNGG	2 cut(s)	455, 578
SduI	GDGCHC	3 cut(s)	34, 314, 578
SetI	ASST	9 cut(s)	10, 150, 190, 230, 242, 273, 349, 495, 607
SfaNI	GCATC	1 cut(s)	575
SfcI	CTRYAG	2 cut(s)	127, 600
SmiMI	CAYNNNNRTG	1 cut(s)	37
SphI	GCATGC	1 cut(s)	384
Sse9I	AATT	3 cut(s)	181, 325, 400
SsiI	CCGC	1 cut(s)	233
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	3 cut(s)	35, 189, 332
StyD4I	CCNGG	2 cut(s)	453, 576
TaaI	ACNGT	5 cut(s)	258, 284, 462, 476, 592
TaqI	TCGA	2 cut(s)	408, 551
TasI	AATT	3 cut(s)	181, 325, 400
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	442, 556
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	4 cut(s)	263, 289, 544, 595
TseFI	GTSAC	5 cut(s)	47, 134, 165, 252, 424
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	5 cut(s)	47, 134, 165, 252, 424
TspDTI	ATGAA	3 cut(s)	205, 254, 553
TspRI	CASTG	4 cut(s)	263, 289, 544, 595
XagI	CCTNNNNNAGG	1 cut(s)	244
XapI	RAATTY	3 cut(s)	181, 325, 400
XceI	RCATGY	2 cut(s)	384, 425
XspI	CTAG	3 cut(s)	35, 189, 332
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.