Rh7BG329300

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017014
Physical Location & Seq
Forward (+)
34056011 .. 34056685
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG329300.1

Sequence Viewer

Length: 675 bp
ATGAGTCACATTCTTACAACTGGGGGAAGGGATGGTTGTATTGTAAACAATGATGTGAGTGTGAAATCTCACATTGTGGAAAACTACAGGGGTCACCGGCAGGAGGTGTGTGGATTGAAGTGGTCACGCTCAGGGCAGAATTTAGCTAGTGGAGGGAATGATAGTCGGGTTTTAATATGGGACAGGTCGGCGGCAACCTCTGCAAGGCAGTCACAGTGGCTTCACAAGCTTGAAGGCCACAGTGGAGCAGTCAAGGCCCTTGCTTGGTGCCCATTTCAAGGGAATTTGCTAGCCTCTGGTGGAGGTGAGGATGACCGGTGCATTAAGTTTTGGAATGCACGCACAGGCTCGTGCTTGAATTCAATCGACACAGGCTCACAGGTGACTGCTCTTCTGTGGAATCACCATGACCGGGAACTGTTGAGTTCTCACGGTTTTACCAAAAACCAGCTAATATTGTGGGACTACCCCTCAATGGTGAGGAGGACAGAAATCACTGGGCATACATCGAGGATTCTTTTCATGACTCAGAGCCCGGATGGATGCGCTGTGGCTTCTGCAGCTGGTGGGGATGATGAGTCTGTGATGTTATGGAATGTGTTTATGGAAGTCCCTAAGCCTGTGCGAAAAGAAGATCATATGCCATTTGCTCACTCATTCTACCACGTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

224

Amino Acids

24.89

Weight (kDa)

7.74

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 2 - 198 1.1e-73 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 3 - 199 6.6e-21 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 4 - 142 1.3e-19 WDR3 first beta-propeller domain
WDR55 PF24796 4 - 145 3.1e-07 WDR55
Beta-prop_WDR5 PF25175 4 - 143 2.7e-17 WDR5 beta-propeller domain
WD40 PF00400 27 - 61 3e-07 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 27 - 121 3.9e-07 TEP-1 second beta-propeller
WD40_Gbeta PF25391 27 - 201 1.6e-10 G protein beta WD-40 repeat protein
Beta-prop_EML PF23409 29 - 155 7.3e-06 Echinoderm microtubule-associated protein first beta-propeller
EIF3I PF24805 30 - 143 4.2e-07 EIF3I
Beta-prop_THOC3 PF25174 32 - 140 6.8e-22 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 33 - 143 1.1e-06 Aladin seven-bladed propeller
Beta-prop_WDR19_1st PF23389 39 - 199 2.9e-08 WDR19 first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 47 - 128 1.4e-07 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 74 - 112 4.9e-06 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 97 - 202 1.3e-06 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 127 - 200 9.3e-08 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 267
AciI CCGC 1 cut(s) 191
AcsI RAATTY 3 cut(s) 139, 283, 358
AdeI CACNNNGTG 1 cut(s) 76
AfiI CCNNNNNNNGG 6 cut(s) 103, 204, 264, 278, 412, 475
AgeI ACCGGT 1 cut(s) 315
AgsI TTSAA 5 cut(s) 118, 233, 278, 358, 363
AluBI AGCT 4 cut(s) 146, 229, 451, 563
AluI AGCT 4 cut(s) 146, 229, 451, 563
AoxI GGCC 2 cut(s) 235, 255
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 3 cut(s) 139, 283, 358
AsiGI ACCGGT 1 cut(s) 315
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 2 cut(s) 413, 536
AsuHPI GGTGA 5 cut(s) 86, 317, 394, 395, 490
AsuNHI GCTAGC 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 536
BauI CACGAG 1 cut(s) 349
BbvI GCAGC 1 cut(s) 572
BccI CCATC 2 cut(s) 26, 533
BcnI CCSGG 2 cut(s) 413, 536
BfaI CTAG 2 cut(s) 147, 290
BfmI CTRYAG 2 cut(s) 85, 558
BisI GCNGC 2 cut(s) 192, 561
BlsI GCNGC 2 cut(s) 193, 562
Bme1390I CCNGG 2 cut(s) 413, 536
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 413, 536
BmrI ACTGGG 2 cut(s) 30, 507
BmsI GCATC 1 cut(s) 533
BmtI GCTAGC 1 cut(s) 293
BmuI ACTGGG 2 cut(s) 30, 507
Bpu10I CCTNAGC 2 cut(s) 130, 615
BpuMI CCSGG 2 cut(s) 413, 536
BsaWI WCCGGW 1 cut(s) 315
Bsc4I CCNNNNNNNGG 6 cut(s) 103, 204, 264, 278, 412, 475
Bse118I RCCGGY 2 cut(s) 96, 315
Bse1I ACTGG 2 cut(s) 25, 502
BseGI GGATG 5 cut(s) 37, 316, 544, 548, 577
BseLI CCNNNNNNNGG 6 cut(s) 103, 204, 264, 278, 412, 475
BseMII CTCAG 2 cut(s) 144, 542
BseNI ACTGG 2 cut(s) 25, 502
BseRI GAGGAG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 572
BshFI GGCC 2 cut(s) 237, 257
BshNI GGYRCC 1 cut(s) 267
BshTI ACCGGT 1 cut(s) 315
BsiSI CCGG 4 cut(s) 97, 316, 412, 536
BslFI GGGAC 3 cut(s) 194, 476, 596
BslI CCNNNNNNNGG 6 cut(s) 103, 204, 264, 278, 412, 475
BsmFI GGGAC 3 cut(s) 194, 476, 596
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 2 cut(s) 237, 257
Bsp1286I GDGCHC 2 cut(s) 272, 536
Bsp143I GATC 1 cut(s) 634
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 237, 257
BspCNI CTCAG 2 cut(s) 143, 541
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 1 cut(s) 269
BspMAI CTGCAG 1 cut(s) 562
BspOI GCTAGC 1 cut(s) 293
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 267
BsrFI RCCGGY 2 cut(s) 96, 315
BsrI ACTGG 2 cut(s) 25, 502
BssAI RCCGGY 2 cut(s) 96, 315
BssMI GATC 1 cut(s) 634
BssSI CACGAG 1 cut(s) 349
Bst2BI CACGAG 1 cut(s) 349
Bst4CI ACNGT 4 cut(s) 216, 242, 420, 434
Bst6I CTCTTC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 291, 340
BstDEI CTNAG 3 cut(s) 130, 528, 615
BstEII GGTNACC 1 cut(s) 92
BstENI CCTNNNNNAGG 1 cut(s) 202
BstF5I GGATG 5 cut(s) 37, 316, 544, 548, 577
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 1 cut(s) 637
BstMBI GATC 1 cut(s) 634
BstMWI GCNNNNNNNGC 4 cut(s) 200, 226, 254, 560
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 411, 534
BstSFI CTRYAG 2 cut(s) 85, 558
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 572
BsuRI GGCC 2 cut(s) 237, 257
BtsCI GGATG 5 cut(s) 37, 316, 544, 548, 577
BtsIMutI CAGTG 3 cut(s) 221, 247, 495
Cac8I GCNNGC 2 cut(s) 291, 340
CciI TCATGA 1 cut(s) 522
CfoI GCGC 1 cut(s) 548
Cfr10I RCCGGY 2 cut(s) 96, 315
Cfr13I GGNCC 1 cut(s) 256
CspAI ACCGGT 1 cut(s) 315
CspCI CAANNNNNGTGG 1 cut(s) 653
CviAII CATG 2 cut(s) 407, 523
DdeI CTNAG 3 cut(s) 130, 528, 615
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
DraIII CACNNNGTG 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 256
EcoO65I GGTNACC 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 536
FaeI CATG 2 cut(s) 410, 526
FaiI YATR 8 cut(s) 178, 408, 504, 524, 592, 605, 639, 641
FaqI GGGAC 3 cut(s) 194, 476, 596
FatI CATG 2 cut(s) 406, 522
FauNDI CATATG 1 cut(s) 639
Fnu4HI GCNGC 2 cut(s) 192, 561
FokI GGATG 5 cut(s) 44, 323, 551, 555, 584
FriOI GRGCYC 1 cut(s) 536
Fsp4HI GCNGC 2 cut(s) 192, 561
FspBI CTAG 2 cut(s) 147, 290
GlaI GCGC 1 cut(s) 547
GluI GCNGC 2 cut(s) 192, 561
HaeIII GGCC 2 cut(s) 237, 257
HapII CCGG 4 cut(s) 97, 316, 412, 536
HhaI GCGC 1 cut(s) 548
Hin1II CATG 2 cut(s) 410, 526
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 5 cut(s) 4, 400, 514, 526, 578
HpaII CCGG 4 cut(s) 97, 316, 412, 536
HphI GGTGA 5 cut(s) 86, 317, 394, 395, 490
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 1 cut(s) 523
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 21, 227
HpyCH4III ACNGT 4 cut(s) 216, 242, 420, 434
HpyCH4IV ACGT 1 cut(s) 666
HpyCH4V TGCA 4 cut(s) 203, 321, 338, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 226, 254, 560
HpyF3I CTNAG 3 cut(s) 130, 528, 615
HpySE526I ACGT 1 cut(s) 666
Hsp92II CATG 2 cut(s) 410, 526
HspAI GCGC 1 cut(s) 546
Kzo9I GATC 1 cut(s) 634
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 1 cut(s) 572
LweI GCATC 1 cut(s) 533
MaeI CTAG 2 cut(s) 147, 290
MaeII ACGT 1 cut(s) 666
MaeIII GTNAC 5 cut(s) 5, 92, 123, 210, 382
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 2 cut(s) 383, 644
MhlI GDGCHC 2 cut(s) 272, 536
MluCI AATT 3 cut(s) 139, 283, 358
MlyI GAGTC 3 cut(s) 13, 520, 587
MseI TTAA 2 cut(s) 173, 324
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 4 cut(s) 97, 316, 412, 536
MspR9I CCNGG 2 cut(s) 413, 536
Mva1269I GAATGC 1 cut(s) 340
MwoI GCNNNNNNNGC 4 cut(s) 200, 226, 254, 560
NciI CCSGG 2 cut(s) 413, 536
NdeI CATATG 1 cut(s) 639
NdeII GATC 1 cut(s) 634
NheI GCTAGC 1 cut(s) 289
NlaIII CATG 2 cut(s) 410, 526
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 5 cut(s) 5, 92, 123, 210, 382
PagI TCATGA 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 2 cut(s) 400, 514
PinAI ACCGGT 1 cut(s) 315
PkrI GCNGC 2 cut(s) 193, 562
PleI GAGTC 3 cut(s) 12, 520, 586
PpsI GAGTC 3 cut(s) 12, 520, 586
PspEI GGTNACC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 562
PvuII CAGCTG 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 173, 324
SatI GCNGC 2 cut(s) 192, 561
Sau3AI GATC 1 cut(s) 634
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 3 cut(s) 13, 520, 587
ScrFI CCNGG 2 cut(s) 413, 536
SduI GDGCHC 2 cut(s) 272, 536
SfaNI GCATC 1 cut(s) 533
SfcI CTRYAG 2 cut(s) 85, 558
Sse9I AATT 3 cut(s) 139, 283, 358
SsiI CCGC 1 cut(s) 191
SspI AATATT 1 cut(s) 456
SspMI CTAG 2 cut(s) 147, 290
StyD4I CCNGG 2 cut(s) 411, 534
TaaI ACNGT 4 cut(s) 216, 242, 420, 434
TaiI ACGT 1 cut(s) 669
TaqI TCGA 2 cut(s) 366, 509
TasI AATT 3 cut(s) 139, 283, 358
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 2 cut(s) 400, 514
Tru1I TTAA 2 cut(s) 173, 324
Tru9I TTAA 2 cut(s) 173, 324
TscAI CASTG 3 cut(s) 221, 247, 502
TseFI GTSAC 5 cut(s) 5, 92, 123, 210, 382
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 5 cut(s) 5, 92, 123, 210, 382
TspDTI ATGAA 1 cut(s) 511
TspRI CASTG 3 cut(s) 221, 247, 502
XagI CCTNNNNNAGG 1 cut(s) 202
XapI RAATTY 3 cut(s) 139, 283, 358
XspI CTAG 2 cut(s) 147, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.