Rh7DG337400

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017014
Physical Location & Seq
Forward (+)
44349855 .. 44355779
5925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG337400.1

Sequence Viewer

Length: 1056 bp
ATGTCAGGTGATTCCCCTACAAAGATTATGACTTGGAGCCGTATCCAAGATTATGCTAGCTATATAGTGGCAGGAGGGAGTACCACCAAGGAGATTCTAGAAAAGACTGAGAGGTCAGGCTTCTCATCAAATGTCGCATATCAGAAGCTTCTGGCTGAAGCATTGAACATGAACCGTACTAGGATCTTCTCTTATAAGAAACCACAGATCCCCCCGAAACAAATTTCCTCACCTCCTTCAGCCAAAGAACTAAAGAAGCCCCAACACATTGAGATTTTGCATAAATTGGAAGCTCCTGATCTTGAGGATGATTTCTCCTTGAATTTGCTTGATTGGGGCAGCAGCAATGTTGTTGCTATTGCTACTCAAGATGCATTGGTAAGAACACTGAGAGGTTGCCATCGTGGAAGAGTAGGAGCACTAGCATGGAATAGTCACATTCTTACAACTGGGGGAAGGGATGGTTGTATTGTAAACAATGATGTAAGGGTGAAATCTCACATCGTGGAAAACTACAGGGGTCACCGGCAGGAGGTGTGTGGATTGAAGTGGTCACACTCAGAGCAGAATTTAGCTAGTGGAGGGAATGATAGTCGGGTCTTCATATGGGACAGGTCTGCGGCAACCTCTGCAAGGCAGTCACAGTGGCTTCATAAGCTTGATGGCCACAGTGGAGCAGTCAAGGCCCTTGCTTGGTGCCCATTTCAAGGGAATTTGCTAGCCTCTGGTGGAGGTGAGGATGACCGGTGCATTAAGTTTTGGAATGCATGCACAGGCTCGTGCTTGAATTCAATCGACACAGGCTCACAGGTGACTGCTCTTCTGTGGAATCACCATGACCGGGAACTGTTGAGTTCTCACGGTTTTACCAAAAACCAGCTAATATTGTGGGACTACCCCTCAATGGTGAGGAGGACAGAAATCACTGGGCATACATCGAGGATTCTATTCATGACTCAGAGCCCGGATGGATGCACTGTGGCTTTTGCAGCTGGTGGGGATGATGAGTCTGTGATGTTATGGAATGTGTTTATGGAAGTTCCTAAGCCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

351

Amino Acids

38.92

Weight (kDa)

8.09

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 96 - 125 2.7e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 124 - 343 1.9e-19 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 126 - 341 5.5e-80 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 126 - 297 2.7e-19 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 134 - 343 3.1e-27 THOC3 beta-propeller domain
WD40_Prp19 PF24814 144 - 342 8.8e-20 Prp19 WD40 domain
WD40_Gbeta PF25391 163 - 343 2e-09 G protein beta WD-40 repeat protein
WD40 PF00400 170 - 204 1.3e-06 WD domain, G-beta repeat
Beta-prop_WDR19_1st PF23389 182 - 342 5.9e-07 WDR19 first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 190 - 268 1.8e-06 CAF1B/HIR1 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AasI GACNNNNNNGTC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 696
AciI CCGC 1 cut(s) 620
AclWI GGATC 2 cut(s) 191, 202
AcoI YGGCCR 1 cut(s) 664
AcsI RAATTY 5 cut(s) 222, 322, 568, 712, 787
AcuI CTGAAG 2 cut(s) 177, 222
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 2 cut(s) 82, 178
AfiI CCNNNNNNNGG 6 cut(s) 532, 633, 693, 707, 841, 904
AgeI ACCGGT 1 cut(s) 744
AgsI TTSAA 6 cut(s) 166, 322, 547, 707, 787, 792
AluBI AGCT 7 cut(s) 60, 148, 293, 575, 658, 880, 992
AluI AGCT 7 cut(s) 60, 148, 293, 575, 658, 880, 992
Alw21I GWGCWC 1 cut(s) 421
AlwI GGATC 2 cut(s) 191, 202
AoxI GGCC 2 cut(s) 664, 684
ApeKI GCWGC 3 cut(s) 339, 342, 989
ApoI RAATTY 5 cut(s) 222, 322, 568, 712, 787
AsiGI ACCGGT 1 cut(s) 744
AspS9I GGNCC 1 cut(s) 685
AsuC2I CCSGG 2 cut(s) 842, 965
AsuHPI GGTGA 8 cut(s) 20, 222, 502, 515, 746, 823, 824, 919
AsuNHI GCTAGC 2 cut(s) 56, 718
BaeGI GKGCMC 1 cut(s) 701
BalI TGGCCA 1 cut(s) 666
BanI GGYRCC 1 cut(s) 696
BanII GRGCYC 1 cut(s) 965
BauI CACGAG 1 cut(s) 778
BbsI GAAGAC 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 351, 354, 1001
BccI CCATC 4 cut(s) 408, 455, 656, 962
BceAI ACGGC 1 cut(s) 24
BciVI GTATCC 1 cut(s) 53
BcnI CCSGG 2 cut(s) 842, 965
BfaI CTAG 6 cut(s) 57, 98, 180, 422, 576, 719
BfmI CTRYAG 1 cut(s) 514
BfuI GTATCC 1 cut(s) 53
BisI GCNGC 4 cut(s) 340, 343, 621, 990
BlsI GCNGC 4 cut(s) 341, 344, 622, 991
Bme1390I CCNGG 2 cut(s) 842, 965
BmgT120I GGNCC 1 cut(s) 685
BmiI GGNNCC 2 cut(s) 38, 698
BmrFI CCNGG 2 cut(s) 842, 965
BmrI ACTGGG 2 cut(s) 459, 936
BmsI GCATC 2 cut(s) 361, 962
BmtI GCTAGC 2 cut(s) 60, 722
BmuI ACTGGG 2 cut(s) 459, 936
BpiI GAAGAC 1 cut(s) 592
Bpu10I CCTNAGC 1 cut(s) 1044
BpuEI CTTGAG 2 cut(s) 323, 351
BpuMI CCSGG 2 cut(s) 842, 965
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 744
Bsc4I CCNNNNNNNGG 6 cut(s) 532, 633, 693, 707, 841, 904
Bse118I RCCGGY 2 cut(s) 525, 744
Bse1I ACTGG 2 cut(s) 454, 931
Bse3DI GCAATG 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 6 cut(s) 313, 466, 745, 973, 977, 1006
BseLI CCNNNNNNNGG 6 cut(s) 532, 633, 693, 707, 841, 904
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 4 cut(s) 99, 380, 573, 971
BseNI ACTGG 2 cut(s) 454, 931
BseRI GAGGAG 1 cut(s) 925
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 3 cut(s) 351, 354, 1001
BshFI GGCC 2 cut(s) 666, 686
BshNI GGYRCC 1 cut(s) 696
BshTI ACCGGT 1 cut(s) 744
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 4 cut(s) 526, 745, 841, 965
BslFI GGGAC 2 cut(s) 623, 905
BslI CCNNNNNNNGG 6 cut(s) 532, 633, 693, 707, 841, 904
BsmFI GGGAC 2 cut(s) 623, 905
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 2 cut(s) 666, 686
Bsp1286I GDGCHC 3 cut(s) 421, 701, 965
Bsp143I GATC 3 cut(s) 183, 207, 298
BspACI CCGC 1 cut(s) 620
BspANI GGCC 2 cut(s) 666, 686
BspCNI CTCAG 4 cut(s) 100, 381, 572, 970
BspHI TCATGA 1 cut(s) 951
BspLI GGNNCC 2 cut(s) 38, 698
BspOI GCTAGC 2 cut(s) 60, 722
BspPI GGATC 2 cut(s) 191, 202
BspQI GCTCTTC 1 cut(s) 825
BspT107I GGYRCC 1 cut(s) 696
BsrDI GCAATG 1 cut(s) 352
BsrFI RCCGGY 2 cut(s) 525, 744
BsrI ACTGG 2 cut(s) 454, 931
BssAI RCCGGY 2 cut(s) 525, 744
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 183, 207, 298
BssSI CACGAG 1 cut(s) 778
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 778
Bst4CI ACNGT 6 cut(s) 176, 645, 671, 849, 863, 979
Bst6I CTCTTC 2 cut(s) 403, 825
BstAPI GCANNNNNTGC 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 58, 720, 769
BstDEI CTNAG 5 cut(s) 108, 389, 559, 957, 1044
BstEII GGTNACC 1 cut(s) 521
BstENI CCTNNNNNAGG 1 cut(s) 631
BstF5I GGATG 6 cut(s) 313, 466, 745, 973, 977, 1006
BstKTI GATC 3 cut(s) 186, 210, 301
BstMBI GATC 3 cut(s) 183, 207, 298
BstMWI GCNNNNNNNGC 4 cut(s) 629, 655, 683, 989
BstNSI RCATGY 1 cut(s) 771
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 840, 963
BstSFI CTRYAG 1 cut(s) 514
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 3 cut(s) 351, 354, 1001
BstV2I GAAGAC 1 cut(s) 592
BstX2I RGATCY 2 cut(s) 183, 207
BstYI RGATCY 2 cut(s) 183, 207
BsuI GTATCC 1 cut(s) 53
BsuRI GGCC 2 cut(s) 666, 686
BtsCI GGATG 6 cut(s) 313, 466, 745, 973, 977, 1006
BtsIMutI CAGTG 5 cut(s) 386, 650, 676, 924, 975
Cac8I GCNNGC 3 cut(s) 58, 720, 769
CciI TCATGA 1 cut(s) 951
Cfr10I RCCGGY 2 cut(s) 525, 744
Cfr13I GGNCC 1 cut(s) 685
Csp6I GTAC 2 cut(s) 81, 177
CspAI ACCGGT 1 cut(s) 744
CviAII CATG 5 cut(s) 169, 426, 768, 836, 952
CviQI GTAC 2 cut(s) 81, 177
DdeI CTNAG 5 cut(s) 108, 389, 559, 957, 1044
DpnI GATC 3 cut(s) 185, 209, 300
DpnII GATC 3 cut(s) 183, 207, 298
DraIII CACNNNGTG 1 cut(s) 505
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 664
Eam1104I CTCTTC 2 cut(s) 403, 825
EarI CTCTTC 2 cut(s) 403, 825
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 965
Eco57I CTGAAG 2 cut(s) 177, 222
Eco91I GGTNACC 1 cut(s) 521
EcoNI CCTNNNNNAGG 1 cut(s) 631
EcoO109I RGGNCCY 1 cut(s) 685
EcoO65I GGTNACC 1 cut(s) 521
EcoRI GAATTC 1 cut(s) 787
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 2 cut(s) 376, 769
EcoT38I GRGCYC 1 cut(s) 965
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 5 cut(s) 172, 429, 771, 839, 955
FaqI GGGAC 2 cut(s) 623, 905
FatI CATG 5 cut(s) 168, 425, 767, 835, 951
FauNDI CATATG 1 cut(s) 605
Fnu4HI GCNGC 4 cut(s) 340, 343, 621, 990
FokI GGATG 6 cut(s) 320, 473, 752, 980, 984, 1013
FriOI GRGCYC 1 cut(s) 965
Fsp4HI GCNGC 4 cut(s) 340, 343, 621, 990
FspBI CTAG 6 cut(s) 57, 98, 180, 422, 576, 719
GluI GCNGC 4 cut(s) 340, 343, 621, 990
HaeIII GGCC 2 cut(s) 666, 686
HapII CCGG 4 cut(s) 526, 745, 841, 965
Hin1II CATG 5 cut(s) 172, 429, 771, 839, 955
HindIII AAGCTT 2 cut(s) 146, 656
HinfI GANTC 6 cut(s) 11, 94, 829, 943, 955, 1007
HpaII CCGG 4 cut(s) 526, 745, 841, 965
HphI GGTGA 8 cut(s) 20, 222, 502, 515, 746, 823, 824, 919
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 144, 562, 960
Hpy188III TCNNGA 5 cut(s) 98, 296, 302, 368, 952
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 2 cut(s) 246, 450
HpyCH4III ACNGT 6 cut(s) 176, 645, 671, 849, 863, 979
HpyCH4V TGCA 8 cut(s) 280, 374, 632, 750, 767, 771, 975, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 629, 655, 683, 989
HpyF3I CTNAG 5 cut(s) 108, 389, 559, 957, 1044
Hsp92II CATG 5 cut(s) 172, 429, 771, 839, 955
Kzo9I GATC 3 cut(s) 183, 207, 298
LguI GCTCTTC 1 cut(s) 825
LmnI GCTCC 4 cut(s) 36, 298, 416, 674
Lsp1109I GCAGC 3 cut(s) 351, 354, 1001
LweI GCATC 2 cut(s) 361, 962
MaeI CTAG 6 cut(s) 57, 98, 180, 422, 576, 719
MaeIII GTNAC 5 cut(s) 434, 521, 552, 639, 811
MalI GATC 3 cut(s) 185, 209, 300
MboI GATC 3 cut(s) 183, 207, 298
MboII GAAGA 4 cut(s) 178, 420, 592, 812
MflI RGATCY 2 cut(s) 183, 207
MhlI GDGCHC 3 cut(s) 421, 701, 965
MlsI TGGCCA 1 cut(s) 666
MluCI AATT 6 cut(s) 222, 284, 322, 568, 712, 787
MluNI TGGCCA 1 cut(s) 666
MlyI GAGTC 2 cut(s) 949, 1016
Mox20I TGGCCA 1 cut(s) 666
Mph1103I ATGCAT 2 cut(s) 376, 769
MscI TGGCCA 1 cut(s) 666
MseI TTAA 1 cut(s) 753
MslI CAYNNNNRTG 1 cut(s) 424
Msp20I TGGCCA 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 992
MspI CCGG 4 cut(s) 526, 745, 841, 965
MspR9I CCNGG 2 cut(s) 842, 965
Mva1269I GAATGC 1 cut(s) 769
MwoI GCNNNNNNNGC 4 cut(s) 629, 655, 683, 989
NciI CCSGG 2 cut(s) 842, 965
NdeI CATATG 1 cut(s) 605
NdeII GATC 3 cut(s) 183, 207, 298
NheI GCTAGC 2 cut(s) 56, 718
NlaIII CATG 5 cut(s) 172, 429, 771, 839, 955
NlaIV GGNNCC 2 cut(s) 38, 698
NmuCI GTSAC 5 cut(s) 434, 521, 552, 639, 811
NsiI ATGCAT 2 cut(s) 376, 769
NspI RCATGY 1 cut(s) 771
PaeI GCATGC 1 cut(s) 771
PagI TCATGA 1 cut(s) 951
PciSI GCTCTTC 1 cut(s) 825
PctI GAATGC 1 cut(s) 769
PfeI GAWTC 4 cut(s) 11, 94, 829, 943
PinAI ACCGGT 1 cut(s) 744
PkrI GCNGC 4 cut(s) 341, 344, 622, 991
PleI GAGTC 2 cut(s) 949, 1015
PpsI GAGTC 2 cut(s) 949, 1015
PsiI TTATAA 1 cut(s) 195
PspEI GGTNACC 1 cut(s) 521
PspN4I GGNNCC 2 cut(s) 38, 698
PspPI GGNCC 1 cut(s) 685
PsuI RGATCY 2 cut(s) 183, 207
PvuII CAGCTG 1 cut(s) 992
RsaI GTAC 2 cut(s) 82, 178
RsaNI GTAC 2 cut(s) 81, 177
RseI CAYNNNNRTG 1 cut(s) 424
SapI GCTCTTC 1 cut(s) 825
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 4 cut(s) 340, 343, 621, 990
Sau3AI GATC 3 cut(s) 183, 207, 298
Sau96I GGNCC 1 cut(s) 685
SchI GAGTC 2 cut(s) 949, 1016
ScrFI CCNGG 2 cut(s) 842, 965
SduI GDGCHC 3 cut(s) 421, 701, 965
SfaNI GCATC 2 cut(s) 361, 962
SfcI CTRYAG 1 cut(s) 514
SmiMI CAYNNNNRTG 1 cut(s) 424
SmlI CTYRAG 2 cut(s) 302, 366
SmoI CTYRAG 2 cut(s) 302, 366
SphI GCATGC 1 cut(s) 771
Sse9I AATT 6 cut(s) 222, 284, 322, 568, 712, 787
SsiI CCGC 1 cut(s) 620
SspI AATATT 1 cut(s) 885
SspMI CTAG 6 cut(s) 57, 98, 180, 422, 576, 719
StyD4I CCNGG 2 cut(s) 840, 963
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 6 cut(s) 176, 645, 671, 849, 863, 979
TaqI TCGA 2 cut(s) 795, 938
TasI AATT 6 cut(s) 222, 284, 322, 568, 712, 787
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 4 cut(s) 11, 94, 829, 943
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 5 cut(s) 393, 650, 676, 931, 982
TseFI GTSAC 5 cut(s) 434, 521, 552, 639, 811
TseI GCWGC 3 cut(s) 339, 342, 989
Tsp45I GTSAC 5 cut(s) 434, 521, 552, 639, 811
TspDTI ATGAA 4 cut(s) 185, 592, 641, 940
TspRI CASTG 5 cut(s) 393, 650, 676, 931, 982
XagI CCTNNNNNAGG 1 cut(s) 631
XapI RAATTY 5 cut(s) 222, 322, 568, 712, 787
XbaI TCTAGA 1 cut(s) 97
XceI RCATGY 1 cut(s) 771
XspI CTAG 6 cut(s) 57, 98, 180, 422, 576, 719
Zsp2I ATGCAT 2 cut(s) 376, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.