RchiOBHm_Chr7g0240311

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020602
Physical Location & Seq
Reverse (-)
66263278 .. 66264323
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21540

Sequence Viewer

Length: 564 bp
ATGGCTCGGATCTTCAGCCTCAAGCGTCGTCCCAACCCACTGGTTATCGGAGACGACGTGTTTGGAGATATCGAGAATCAGGCGAGAGCTCGCCATCACCATCCCGTGAAGAATGGAGCCATCGGCGATGTGCTCGAGAGAGCACTATTCGAGCCCAACCCAGAGCATGTGGCCGGTGACGGAGGAATGCAGCTGCGTTACAAAGGAATTCCATGGCTGAACTCTGTGACTGTGCTAATTCCCTTGGCCGTCATCATCGGCCTTCAGTTCTGGAAGAAAATCGGAGCCATTTCAACCCTTCTTCTGCTCTCCACAGCCCTCGCACTCGCCCTCCGCGGCGCTTCTCAAGTACGTGAAGGTGACAAGCCGCTGGGCTCTGTTTGGCATCCTCCTCGCCTACCTCCTGCTGACCATCTGCTCCACGTCAGCGGTACTGCTGATCTCTATGGTGACGTGCCACCATTGCACCTGCACCTGGACTGGTTGAGGGGTTTGTATCGTTCTGGGTTTTTTTTTGGGTTAAATTTTCAGTTTTTCCGAGATGTTTGTTTGATTTTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.8

Weight (kDa)

9.25

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020602)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0240311
rosa_laevigata RLG00000000686
rosa_multiflora Rmu_sc0002676.1_g000014
rosa_samantha Rh7AG489100 Rh7BG462000
rosa_wichuraiana Rw7G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 477
Acc36I ACCTGC 1 cut(s) 477
AccII CGCG 1 cut(s) 336
AciI CCGC 4 cut(s) 334, 336, 368, 429
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 2 cut(s) 171, 246
AcsI RAATTY 2 cut(s) 207, 523
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 2 cut(s) 351, 433
AfiI CCNNNNNNNGG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 1 cut(s) 294
AjiI CACGTC 3 cut(s) 58, 424, 454
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 2 cut(s) 89, 193
AluI AGCT 2 cut(s) 89, 193
Alw21I GWGCWC 3 cut(s) 91, 135, 145
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 17
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 3 cut(s) 171, 246, 259
ApeKI GCWGC 2 cut(s) 190, 193
ApoI RAATTY 2 cut(s) 207, 523
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 1 cut(s) 341
AsuHPI GGTGA 4 cut(s) 89, 188, 371, 461
AvaI CYCGRG 1 cut(s) 134
BanII GRGCYC 3 cut(s) 91, 156, 377
Bbv12I GWGCWC 3 cut(s) 91, 135, 145
BbvI GCAGC 2 cut(s) 180, 202
BccI CCATC 4 cut(s) 102, 108, 128, 420
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 1 cut(s) 476
BcoDI GTCTC 1 cut(s) 45
BfoI RGCGCY 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 477
BisI GCNGC 4 cut(s) 191, 194, 337, 368
BlsI GCNGC 4 cut(s) 192, 195, 338, 369
Bme1390I CCNGG 1 cut(s) 476
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 3 cut(s) 58, 424, 454
BmiI GGNNCC 2 cut(s) 118, 286
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 1 cut(s) 394
BpuEI CTTGAG 2 cut(s) 5, 330
BsaAI YACGTR 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 212, 243, 334
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 315, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 45, 485
Bse3DI GCAATG 1 cut(s) 461
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 3 cut(s) 212, 243, 334
BseGI GGATG 2 cut(s) 100, 385
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMI GCAATG 1 cut(s) 461
BseNI ACTGG 2 cut(s) 45, 485
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 2 cut(s) 180, 202
BseYI CCCAGC 1 cut(s) 370
BsgI GTGCAG 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 3 cut(s) 173, 248, 261
BsiHKAI GWGCWC 3 cut(s) 91, 135, 145
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 15
BsmI GAATGC 1 cut(s) 192
BsnI GGCC 3 cut(s) 173, 248, 261
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 5 cut(s) 91, 135, 145, 156, 377
Bsp143I GATC 2 cut(s) 9, 439
Bsp19I CCATGG 1 cut(s) 212
BspACI CCGC 4 cut(s) 334, 336, 368, 429
BspANI GGCC 3 cut(s) 173, 248, 261
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 118, 286
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 2 cut(s) 45, 485
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 3 cut(s) 212, 243, 334
BssMI GATC 2 cut(s) 9, 439
BssT1I CCWWGG 2 cut(s) 212, 243
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 232
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 91
BstDSI CCRYGG 2 cut(s) 212, 334
BstF5I GGATG 2 cut(s) 100, 385
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 2 cut(s) 12, 442
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 9, 439
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstNI CCWGG 1 cut(s) 476
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 474
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 180, 202
BstX2I RGATCY 1 cut(s) 9
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 3 cut(s) 173, 248, 261
BtgI CCRYGG 2 cut(s) 212, 334
BtgZI GCGATG 1 cut(s) 141
BtrI CACGTC 3 cut(s) 58, 424, 454
BtsCI GGATG 2 cut(s) 100, 385
BtsIMutI CAGTG 1 cut(s) 38
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 173
Cfr42I CCGCGG 1 cut(s) 337
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 350, 432
CviAII CATG 2 cut(s) 167, 213
CviQI GTAC 2 cut(s) 350, 432
DpnI GATC 2 cut(s) 11, 441
DpnII GATC 2 cut(s) 9, 439
EaeI YGGCCR 2 cut(s) 171, 246
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 2 cut(s) 212, 243
Eco24I GRGCYC 3 cut(s) 91, 156, 377
Eco32I GATATC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 474
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 2 cut(s) 212, 243
EcoT38I GRGCYC 3 cut(s) 91, 156, 377
ErhI CCWWGG 2 cut(s) 212, 243
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 2 cut(s) 170, 216
FaiI YATR 3 cut(s) 168, 214, 447
FaqI GGGAC 1 cut(s) 15
FatI CATG 2 cut(s) 166, 212
Fnu4HI GCNGC 4 cut(s) 191, 194, 337, 368
FokI GGATG 2 cut(s) 87, 372
FriOI GRGCYC 3 cut(s) 91, 156, 377
Fsp4HI GCNGC 4 cut(s) 191, 194, 337, 368
GlaI GCGC 1 cut(s) 340
GluI GCNGC 4 cut(s) 191, 194, 337, 368
GsaI CCCAGC 1 cut(s) 374
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 3 cut(s) 173, 248, 261
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 341
Hin1II CATG 2 cut(s) 170, 216
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HinfI GANTC 1 cut(s) 76
HpaII CCGG 1 cut(s) 174
HphI GGTGA 4 cut(s) 89, 188, 371, 461
Hpy188I TCNGA 4 cut(s) 9, 50, 284, 539
Hpy188III TCNNGA 3 cut(s) 73, 136, 271
Hpy99I CGWCG 2 cut(s) 30, 59
HpyAV CCTTC 3 cut(s) 272, 308, 350
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 4 cut(s) 57, 352, 423, 453
HpyCH4V TGCA 3 cut(s) 190, 466, 472
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpySE526I ACGT 4 cut(s) 57, 352, 423, 453
Hsp92II CATG 2 cut(s) 170, 216
HspAI GCGC 1 cut(s) 339
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 2 cut(s) 9, 439
LmnI GCTCC 3 cut(s) 116, 284, 423
Lsp1109I GCAGC 2 cut(s) 180, 202
LweI GCATC 1 cut(s) 394
MaeII ACGT 4 cut(s) 57, 352, 423, 453
MaeIII GTNAC 5 cut(s) 176, 197, 226, 359, 449
MalI GATC 2 cut(s) 11, 441
MboI GATC 2 cut(s) 9, 439
MboII GAAGA 4 cut(s) 4, 121, 286, 293
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 5 cut(s) 91, 135, 145, 156, 377
MluCI AATT 3 cut(s) 207, 237, 523
MnlI CCTC 8 cut(s) 29, 176, 329, 341, 399, 402, 411, 480
MseI TTAA 1 cut(s) 521
MspA1I CMGCKG 4 cut(s) 193, 336, 370, 429
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 476
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 476
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 463
NcoI CCATGG 1 cut(s) 212
NdeII GATC 2 cut(s) 9, 439
NlaIII CATG 2 cut(s) 170, 216
NlaIV GGNNCC 2 cut(s) 118, 286
NmuCI GTSAC 4 cut(s) 176, 226, 359, 449
NspI RCATGY 1 cut(s) 170
PaeR7I CTCGAG 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 477
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 4 cut(s) 192, 195, 338, 369
Ppu21I YACGTR 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 2 cut(s) 118, 286
PsuI RGATCY 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 2 cut(s) 351, 433
RsaNI GTAC 2 cut(s) 350, 432
SacI GAGCTC 1 cut(s) 91
SacII CCGCGG 1 cut(s) 337
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 4 cut(s) 191, 194, 337, 368
Sau3AI GATC 2 cut(s) 9, 439
ScrFI CCNGG 1 cut(s) 476
SduI GDGCHC 5 cut(s) 91, 135, 145, 156, 377
SfaNI GCATC 1 cut(s) 394
Sfr274I CTCGAG 1 cut(s) 134
Sfr303I CCGCGG 1 cut(s) 337
SgrBI CCGCGG 1 cut(s) 337
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 3 cut(s) 20, 134, 345
SmoI CTYRAG 3 cut(s) 20, 134, 345
Sse9I AATT 3 cut(s) 207, 237, 523
SsiI CCGC 4 cut(s) 334, 336, 368, 429
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 474
StyI CCWWGG 2 cut(s) 212, 243
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 4 cut(s) 60, 355, 426, 456
TaqI TCGA 3 cut(s) 72, 135, 150
TasI AATT 3 cut(s) 207, 237, 523
TauI GCSGC 2 cut(s) 339, 370
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 4 cut(s) 176, 226, 359, 449
TseI GCWGC 2 cut(s) 190, 193
Tsp45I GTSAC 4 cut(s) 176, 226, 359, 449
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 45
XapI RAATTY 2 cut(s) 207, 523
XceI RCATGY 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.